Gene detail

Detailed information of aacu_s0151.g7.t3 in Acropora acuminata

Genomic Location: sc0000151_pilon:339516...351288
NR annotation: XP_044165402.1, splicing regulatory glutamine/lysine-rich protein 1-like isoform X3 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aacu_s0151.g7.t3

GGTAACACGTTGTTTGCACTGGACGGCGGCGGTCATTGTTGACCGACGTTTGAGTACTCGTTCTTGTAGCCAACACTTGCGATAAAAATGACTACAGGGACTGAGAAACCCACTACGCGGGTAATCCAAGTAACAAACATTGCGCAAAATGCTACAGTTGATCAAATGAAGACCTTGTTTGGTTTTCTTGGAGAAATCGAGGAAATGCATCTTTTCCCAGAAGATCCTATGGTCCACCTCGGTACTGCGACTCGTGTCTGCTTTGTCAAGTTTACTGATCCCTCCAGCGTGCATGTTGCACAACATCTCACAAACACTGTCTTTATAGACAGAGCTCTGATTGTGGTACCAGTTCAAGATGGAACAATACCAGATGAATCTCAAGCAGTTCAGTTAGCAGCACCAGCAAGTGCTGTTGCTGGAGGATTTACTGGATCATCAGGAGGACTTCTACCCACCCCACCCATACCAGCTCAGGTTCCTATTGTTCCTGGTGTTGTTTCCACTGTGATTCCTGGGTTGGCCACCACTCTGACAATGCCAGCACCCCTACCAACCCCTCCCCCATTGACCAATGTGGATCCAAGCAAAATTGATGAAATAAGAAGAACTGTGTATGTTGGTAACTTGGATACAACGCTCTCGGCAGAACAACTTATGGCATTTTTCTCTGGCTGTGGTGAGATCAGATATGTTAGAATGTCAGGAGATGAGACCCAGCCCACCAGGTTTGCTTTCGTTGAGTTTTCAGAGTCCAGTGCAGTAAACACTGCCTTGCAGTACAATGGAGCAATTTTTGGTGGTCGACCACTCAAAGTCAACCACTCCAAAAATGCCATTGTTAAGCCAGCATCAAAATCCTCAGACAAGGATAGAAAAGATGTTGACAAAGCAATGCGGCGTGTCAAAGAAGCATCCTCCATAATTGAAGATGAAATTGATCCAGCGGAcaagtcaagatctcgctccagatcaagatccagacaaagatccagatcaagGTCCAGAAGACGTAAATCTCGTTCCAGGTCAGGATCTCGTAGAAGGCGGTCACGCACTCGCTCACCTTCCAGAGATAAATATAGAGACAGGCGTCGTAGATCTCGTTCATCATCACGGCACAGGAATTTTCGACGTTCTAGGAGCAGGGAAAGGAGGAAACCAAGGCGTTCTAGGTCAAGGGAACGAAAGTCCAGATCTCGTGACCGCTCACGTGATAAGTCTAGAGAAAGAAAGAGGACAGTTTCACCAGAGAGGTCGCCATCaaaagaaagaaaaccagccaaagagaaatctgtggagaaagacgaagtaaaagagaaaagcagagaaaaatcagaagaaagggcagacacagagaaaaggatatccaaggaaaacgaaagagcaaaagaaaaagaactagaaagggaaaaagaacgagaaagaagaaaggaaaaggaaagacagaaagaaaaggagagagaaaaggaaagggaaaaacgagaacgggagaaagagaaagagaagcagcgagaggaggaacgagagaggaaacgtgaaagagaacaagaacgagaaaaagaGCGTGACAGGGACAGACGTAGGGGAAGATCAAAGAGTGCATCAAGGTCGCCATCTCCGAAGAGGCATCACAAGAGAAAGAAGGAAAAGAAAACCAGAGAGAAAAAGTACAGCAGTTCCCAAAGTGCTGATGAAGAAAGTGACAAAGAAAGAAACTTTCCAGCAGAGAGTGATGGAGAAAAGGAGAAAAGTAAGAGAAGCAAACGACATGGCAGTGTAGAACCACAAGACAGTGAAGACTCGGATTACGagaagagtaagaagaagaagaagaaatatgttgaagaagaCATGGATGAGGACATTTCAGATGACGAGGAGCGAAGAGATGAGCGGGAAGATAAACAGTACAGTGAGCAACGAGATGAAAGCCGACACAGAGAAGAAAAAAGTGACCGAGACAACAGGGATGAGAGGAAGTCAAAGAAGAAATCACGCGGATACAAGAAGAAGCCAGTTAGTGCTGGCGATTATGACAGTGACAGTCACTGAGATCTTTAGCCTAAGTATTTGTCATAAAAACAATATTTCAAATGAATGATGAACCCTCAGTACAAAGTAGTACTTAGTATCTTAGAGATTGCCATTTACCCACTTGATTCAAATCACAGTCATTATTACAGTCACAAACAATGGATTCAACTTACTGCAAGATTTTGGTGTGCTTCTTTTTCCGCCTCCAAATTTGAAAAACGTGGGAGTCCAAGGTGCCATCCAGTAGTTACATGTTGCCTTTTTTGTTGGACTACCATGTTTGTTTGTCAGACTTAATTGGATTTAAAGGCATGACAGATTCAGGGaactccatgttgtacccaattcaaatctcttagggttaaggttctttgtgtttcattcacaataatgtagcattcacatttaaatgatatagaagttcttggaacaaaccgttttatccccaaatgatttgaattgggtacaacaatgatttaacccaaacagtctattAGCCAAGGTGGTCATTGTACAACTAAAGTGTCCATTTATAGTTCTTTGAGATGTTTAGTACATTTTAGAAGTTATTTAGGCATTTTGTGTTTCAATAAAGTTCACTCTTACCA

Protein

Uniprot

Uniprot term	Description
Q8BZX4	Splicing regulatory glutamine/lysine-rich protein 1 OS=Mus musculus OX=10090 GN=Srek1 PE=2 SV=1
Q9JKL7	Splicing regulatory glutamine/lysine-rich protein 1 OS=Rattus norvegicus OX=10116 GN=Srek1 PE=1 SV=1
Q8WXA9	Splicing regulatory glutamine/lysine-rich protein 1 OS=Homo sapiens OX=9606 GN=SREK1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan

PANTHER

PANTHER term	Description	Source
-	-	-

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan