Gene detail

Detailed information of aacu_s0152.g60.t2 in Acropora acuminata

Genomic Location: sc0000152_pilon:735671...754054
NR annotation: XP_044177611.1, nucleotide-binding oligomerization domain-containing protein 1-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

aacu_s0152.g60.t2

AtggacaacttgcttattccttcaacttttaacaagctcagtcttttagcagtgaaaggctggattggtttgggaagcatactgtctgcaatatttctaaaaatgcacgacagtgaacccagttctgattttcgctgtgatgtgaaagacaacgcagacaaggacttcgtgcgagtcaaatgtttcgatcaataccagaagcaaaacaataaactgggagttccactttacgccttcatcatggttaacgtcttggtgattcccactgtgtccgtgatttactcccagtgtgtcaaagcaatagtaagagaactcgagtgtcgccaccaagattctgaacgaagaagaagccgtcgccttttcctctcatatttttgtcagctcgctgtcagctgtgctctgaggatagttttcatcgccttcctagagactgaattattttatcccaggacttttcctgctgagttttcctgttccgttacaggtacttcggtggaactttcgcccatcaaccaaacaaagtctaccaatgcagtccagtgtgtcagtcaacgagcgggtgataaaatcttctggatcgaaactgtggaaaagttaaatggaattttcgcattttttgctttcatggagattctttggatcttctcgcgagctcgaaaggatgaaaaattcatgaacaacaggcagttttgtgttgatcatttggaatcgaacgcaaacgatttccacagtgccaagcaaacactgaaagagaattgtttgaaggatactaagtatttaagtgatcttaaacaaccttttggacgaccaaatcctggcgaaggcgacagtcatgatctcatcatggacgagatctatgtcaatttagcaatccatgaaggcagagctcgccattactttgcggaccccgacaggtggaaacacctcaaagaatacccagccgatgcaaacgactgcaaattcgcaaaacccgaggatattcttgacgaaaatcacaagaatgttctcgttgttggccgtcctgggataggaaagacgtcattaagtacaaacatgctccgactttgggcatctggtgaagcttttaatgtctttgacgttgtcttcctcataaagtttagGcgctttaatgacaaagcaaagttgagtcttcgtgaactgttggctggcgcagaaacagtccaacgtttggatgattctgtttgggaatttgtccaaaacgaatctaccaaagttcttttaatctttgatggactggatgaatattcaaggaaagaggaaatcaacacccaacaacactgcaagaacgatgtggaagaaaagatacccgtttccgttttgtataagaaactggcggccggagaacttcttcgtggtgcgagcatactcgcgacaacaagaccaactgctgttaaatatgttgcacatatcaattttgaaagaacagtggaaattctcggatttacatccgcgaacgttgaagaatatgttaagaattttagtcgcggtaaccccaaagcaatggagaaaatgtgggaacacatcaagtccaacattaacctgttttcattttgctacatcccaatgaactgttttctcatttgccactgcttgctccaaatcatcccttctgagtcttcccaagcactgccaacgaagatgacggacatttataaaatgaccgtaaagatgctcttgttcaatcacaacagggaaggtttctctcaaaaggaactcgaaaggctcaaatcaacgcacatatacaagccatttgaagagttccctggagaatttcaaaaaatcttcaaaagtcttggagaaatcgcttttaaagggatcaaagaagaaagactgctctttgaatcaagggaagtcagtgggttagaagattgcggactgcttcacaaactgcctgacctgagaccgaaagcattgggtgacccgcctaagacccaattctgttttactcacctgacggtgcaagaattctttgctgcaaggcatttggtggacaccgagtcaaatgaggaaattgaaagatttgtttgcaagcatatcaatgacggcacatggcaagtggtactgcagtttgtagccggattgctgaagcgctcaaccgacatttttatcaaactgttgccgaagtcaactctgaagagaaaaacatttctgtcttcaaaactagaacttttcttttggccagcgagaaaagaagacaaagatgtagctgtgcaagtatgtaagtgtctgtacgagattagcgatgaacagcagcagccagtattacgaaacaaaatagaggaagttaaattcaatgccgttcactttggtcaatgttcactcgcaccgattgatgttgctgctgtcttaaatttcttagaaaatgctgaagatgttttgtatattaatttgtccgacaataggttgggagacttaggcgcaaacgaagtgaaaaaatttattgttaacaggggacgtaaactaaaatcgttacaattccgtgcaaacaacttgaccgacaaggcagcgaaggatttcgctgcagcacttaagcacagtaattgtaaactagaatcgttatccctcagttttaacaacttgaccgacaacgcagcgaaagatttcgctgcagcacttaagcacagctattgtaaactggaatcgttacacctcattggtataagcgacttcaccgagaacgcagcgaaggatttcgctgcagcacttaagcacagcaattgtaaactgaaatcgttatccctcagttttaacaacttgactgacaacgcagcaaaggatttcgctgcagcacttaagcacagtaattgcaaactaaaatcgttgcacctcattgTCACAGGTAACGCTAACGTGAAATCAATCGTTGTCGCAATTTCACGAGCCGCGATGAATCAAGATCCCGAGGATGTACAAGATCAGGGCACCCAACAACGGAATGAAGAGGAATATCTTGTCGCTGCGGGCAATGAGCCAAGACTGTTCAGATTGGTGTCTTTGGTAATGTTCGCCATATTTGTGGTTTATTGTACCCTGTACTGCGAGTCATCAAGCGTCGACTGTCAGGGTTTTTCAGTGTATCATGTGCCAAATTGTGATGCCTTCTGTTGGAAGGCTGTATGGTTAATATGCTCCATATTGACGTCCATAATCTTCATTGGTTTGTTAAATCAATGGGCGCTTCCGGATTTGAGACCCGTCTCATGCGTGAGTAAAACGTTTTCTCAATTGACTGACAAAGCATTAACTCAAAACGCTTTGAGGAGACAGCGGCGGAGGATCATTCAAGACCAACTGCTTACGAGGCGAGAAAACGAGATGATCTCGAAAATCGATCCAGCAGATCTATCAAGCTTTACTTGGTTAATAAGCTTGCTTATTTTCCTATCAGTCCTTGTTTACTGGATGGGAGTTTCAAGTTATTCTCTGGTCAGTCATGTCAATTTACCGGGCCCCAAACCATTTCCGTTCATTGGAAACTTGTACGAAGCTGTTTACAAATACGACGGCCTACATAATGCATTTATGGCCTATGATAAGAAGTATGGCAAGGTCTACAAGCTTTTCTTGGGACGGGATCCTATCATAGTTGTCACAGACTTAGAAATCATCAAACGGATCCTTGTAACTGATTTTGATAAATTCAGGAACAGGCCGGAGGTTCTAGCGGGTAACCCTCCCCTTGACAAAGGATTATTTGGTGCCAGAGATGGCGACTGGAAACGCATTCGATCCATTTTGACCCCGACATTCAGTGCCTCCAAACTGAAGGAGATCGTACCAATCATTGAAGAAGCAGTTAATGTTCTACGGCCAAAATTTGACAGCCTTGCAAAGGATGATAAAAGTGTGGACGTTTCTACCCCATTTGGTCAGTTTTCTTTGGATATTATTCTCACCGCTGGTTTTGGACTGAAAACAGACATTCAGACCAAACCTGACCCTGAGCTGGTGAACAAAATCTTAACAGTATTCAGTGTCCCTACCTTTCATCGAGCAATCTCTATGTTCCCTTTCTTTCGCCAAGTAAGAAAGATATTTCACTTAAGCCCCATTCAGCATGTTCCGTATTTTGCAAAAATGGCCAAAAGCGTTTTGGATCTCCGAAGAAGTGGGTCAGTTGGTCGAAGGGACCTGGTACAGCTTATGCTAGAAGTCGAGCAGCGGGCTGGGAACAACAACGAGGTGAGGAAATTAACCGACGAAGAAATCATCGGCCAGTCGATCGTATTCTTCGTGGCGGGTTCGGAAACTACCGGAGCTACCTTGGCCTTTACTGCGTATTACCTCGCACATCATCCAGACATACAGGACAAACTGCTTCGTGAGATAGACGACGCGGTGAAGTCGCGAGGTGACGAGTCGACCTACCAATTCGTACAAAGCCTTGAATATCTTGAACGAGTTCTCAGTGAGGTGCTTCGCCTAGCCACTGTTGGTTATGTCAATATCCGTGAATGCATGGAGACCTGTGAAATTGGAGGAGTTGAATTTCCTGCTGGGGTTGGCGTTAGCATTCCAGCTTTCGTCATTCACCGCAATCCTGACTACTGGCCAGAGCCTGAGAAGTTCGACCCAGATCGCTTCCTTCCAGAGTTGGTCAGAAAGCGTCCAGCCTTCTCGTACATGCCCTTTGGCCTGGGACCAAAGCAATGCCTTGGAATCAGATTGGCTCAAATAGAGATGAAGATGGCGCTGATTGAAATTCTTCAGAGAGTGAAATTTGCGAAAAAAGAAGACAGCACAGGAGAGCTGAAGTTCCGTGCGGCAACTATCTTACAACCACGTACCCCTGTTCTAGTCAAAGTCGTGGCGCGCTCACCTTGCAACTAG

Transcript

aacu_s0152.g60.t2

ttcgagtgctgtgatggcccatgcctttttcggaaatacgtttactagaatgggagactgtgctggcaatctggctctacaaaaccgacgccatttccaacacctcaggcacacctagatcagaagcgaagtcgaacgatcagagacaaaAtggacaacttgcttattccttcaacttttaacaagctcagtcttttagcagtgaaaggctggattggtttgggaagcatactgtctgcaatatttctaaaaatgcacgacagtgaacccagttctgattttcgctgtgatgtgaaagacaacgcagacaaggacttcgtgcgagtcaaatgtttcgatcaataccagaagcaaaacaataaactgggagttccactttacgccttcatcatggttaacgtcttggtgattcccactgtgtccgtgatttactcccagtgtgtcaaagcaatagtaagagaactcgagtgtcgccaccaagattctgaacgaagaagaagccgtcgccttttcctctcatatttttgtcagctcgctgtcagctgtgctctgaggatagttttcatcgccttcctagagactgaattattttatcccaggacttttcctgctgagttttcctgttccgttacaggtacttcggtggaactttcgcccatcaaccaaacaaagtctaccaatgcagtccagtgtgtcagtcaacgagcgggtgataaaatcttctggatcgaaactgtggaaaagttaaatggaattttcgcattttttgctttcatggagattctttggatcttctcgcgagctcgaaaggatgaaaaattcatgaacaacaggcagttttgtgttgatcatttggaatcgaacgcaaacgatttccacagtgccaagcaaacactgaaagagaattgtttgaaggatactaagtatttaagtgatcttaaacaaccttttggacgaccaaatcctggcgaaggcgacagtcatgatctcatcatggacgagatctatgtcaatttagcaatccatgaaggcagagctcgccattactttgcggaccccgacaggtggaaacacctcaaagaatacccagccgatgcaaacgactgcaaattcgcaaaacccgaggatattcttgacgaaaatcacaagaatgttctcgttgttggccgtcctgggataggaaagacgtcattaagtacaaacatgctccgactttgggcatctggtgaagcttttaatgtctttgacgttgtcttcctcataaagtttagGcgctttaatgacaaagcaaagttgagtcttcgtgaactgttggctggcgcagaaacagtccaacgtttggatgattctgtttgggaatttgtccaaaacgaatctaccaaagttcttttaatctttgatggactggatgaatattcaaggaaagaggaaatcaacacccaacaacactgcaagaacgatgtggaagaaaagatacccgtttccgttttgtataagaaactggcggccggagaacttcttcgtggtgcgagcatactcgcgacaacaagaccaactgctgttaaatatgttgcacatatcaattttgaaagaacagtggaaattctcggatttacatccgcgaacgttgaagaatatgttaagaattttagtcgcggtaaccccaaagcaatggagaaaatgtgggaacacatcaagtccaacattaacctgttttcattttgctacatcccaatgaactgttttctcatttgccactgcttgctccaaatcatcccttctgagtcttcccaagcactgccaacgaagatgacggacatttataaaatgaccgtaaagatgctcttgttcaatcacaacagggaaggtttctctcaaaaggaactcgaaaggctcaaatcaacgcacatatacaagccatttgaagagttccctggagaatttcaaaaaatcttcaaaagtcttggagaaatcgcttttaaagggatcaaagaagaaagactgctctttgaatcaagggaagtcagtgggttagaagattgcggactgcttcacaaactgcctgacctgagaccgaaagcattgggtgacccgcctaagacccaattctgttttactcacctgacggtgcaagaattctttgctgcaaggcatttggtggacaccgagtcaaatgaggaaattgaaagatttgtttgcaagcatatcaatgacggcacatggcaagtggtactgcagtttgtagccggattgctgaagcgctcaaccgacatttttatcaaactgttgccgaagtcaactctgaagagaaaaacatttctgtcttcaaaactagaacttttcttttggccagcgagaaaagaagacaaagatgtagctgtgcaagtatgtaagtgtctgtacgagattagcgatgaacagcagcagccagtattacgaaacaaaatagaggaagttaaattcaatgccgttcactttggtcaatgttcactcgcaccgattgatgttgctgctgtcttaaatttcttagaaaatgctgaagatgttttgtatattaatttgtccgacaataggttgggagacttaggcgcaaacgaagtgaaaaaatttattgttaacaggggacgtaaactaaaatcgttacaattccgtgcaaacaacttgaccgacaaggcagcgaaggatttcgctgcagcacttaagcacagtaattgtaaactagaatcgttatccctcagttttaacaacttgaccgacaacgcagcgaaagatttcgctgcagcacttaagcacagctattgtaaactggaatcgttacacctcattggtataagcgacttcaccgagaacgcagcgaaggatttcgctgcagcacttaagcacagcaattgtaaactgaaatcgttatccctcagttttaacaacttgactgacaacgcagcaaaggatttcgctgcagcacttaagcacagtaattgcaaactaaaatcgttgcacctcattgTCACAGGTAACGCTAACGTGAAATCAATCGTTGTCGCAATTTCACGAGCCGCGATGAATCAAGATCCCGAGGATGTACAAGATCAGGGCACCCAACAACGGAATGAAGAGGAATATCTTGTCGCTGCGGGCAATGAGCCAAGACTGTTCAGATTGGTGTCTTTGGTAATGTTCGCCATATTTGTGGTTTATTGTACCCTGTACTGCGAGTCATCAAGCGTCGACTGTCAGGGTTTTTCAGTGTATCATGTGCCAAATTGTGATGCCTTCTGTTGGAAGGCTGTATGGTTAATATGCTCCATATTGACGTCCATAATCTTCATTGGTTTGTTAAATCAATGGGCGCTTCCGGATTTGAGACCCGTCTCATGCGTGAGTAAAACGTTTTCTCAATTGACTGACAAAGCATTAACTCAAAACGCTTTGAGGAGACAGCGGCGGAGGATCATTCAAGACCAACTGCTTACGAGGCGAGAAAACGAGATGATCTCGAAAATCGATCCAGCAGATCTATCAAGCTTTACTTGGTTAATAAGCTTGCTTATTTTCCTATCAGTCCTTGTTTACTGGATGGGAGTTTCAAGTTATTCTCTGGTCAGTCATGTCAATTTACCGGGCCCCAAACCATTTCCGTTCATTGGAAACTTGTACGAAGCTGTTTACAAATACGACGGCCTACATAATGCATTTATGGCCTATGATAAGAAGTATGGCAAGGTCTACAAGCTTTTCTTGGGACGGGATCCTATCATAGTTGTCACAGACTTAGAAATCATCAAACGGATCCTTGTAACTGATTTTGATAAATTCAGGAACAGGCCGGAGGTTCTAGCGGGTAACCCTCCCCTTGACAAAGGATTATTTGGTGCCAGAGATGGCGACTGGAAACGCATTCGATCCATTTTGACCCCGACATTCAGTGCCTCCAAACTGAAGGAGATCGTACCAATCATTGAAGAAGCAGTTAATGTTCTACGGCCAAAATTTGACAGCCTTGCAAAGGATGATAAAAGTGTGGACGTTTCTACCCCATTTGGTCAGTTTTCTTTGGATATTATTCTCACCGCTGGTTTTGGACTGAAAACAGACATTCAGACCAAACCTGACCCTGAGCTGGTGAACAAAATCTTAACAGTATTCAGTGTCCCTACCTTTCATCGAGCAATCTCTATGTTCCCTTTCTTTCGCCAAGTAAGAAAGATATTTCACTTAAGCCCCATTCAGCATGTTCCGTATTTTGCAAAAATGGCCAAAAGCGTTTTGGATCTCCGAAGAAGTGGGTCAGTTGGTCGAAGGGACCTGGTACAGCTTATGCTAGAAGTCGAGCAGCGGGCTGGGAACAACAACGAGGTGAGGAAATTAACCGACGAAGAAATCATCGGCCAGTCGATCGTATTCTTCGTGGCGGGTTCGGAAACTACCGGAGCTACCTTGGCCTTTACTGCGTATTACCTCGCACATCATCCAGACATACAGGACAAACTGCTTCGTGAGATAGACGACGCGGTGAAGTCGCGAGGTGACGAGTCGACCTACCAATTCGTACAAAGCCTTGAATATCTTGAACGAGTTCTCAGTGAGGTGCTTCGCCTAGCCACTGTTGGTTATGTCAATATCCGTGAATGCATGGAGACCTGTGAAATTGGAGGAGTTGAATTTCCTGCTGGGGTTGGCGTTAGCATTCCAGCTTTCGTCATTCACCGCAATCCTGACTACTGGCCAGAGCCTGAGAAGTTCGACCCAGATCGCTTCCTTCCAGAGTTGGTCAGAAAGCGTCCAGCCTTCTCGTACATGCCCTTTGGCCTGGGACCAAAGCAATGCCTTGGAATCAGATTGGCTCAAATAGAGATGAAGATGGCGCTGATTGAAATTCTTCAGAGAGTGAAATTTGCGAAAAAAGAAGACAGCACAGGAGAGCTGAAGTTCCGTGCGGCAACTATCTTACAACCACGTACCCCTGTTCTAGTCAAAGTCGTGGCGCGCTCACCTTGCAACTAGCAGGAAGAACATTTGCCCCGTTCTTGACTCTCGTCTCAATTTTATCCGCATGGTTAAGAGTTCAACATTTACCTTAAAGATCATTTTCTTGTGACTATTTTCTATTATATTATACGTCATACTTTActgatttagcatggggagggtaacgtccctggactacggcaggcctaagccaaatatgacaaaccagtttagatattacgctcgccttcttgttgttacctgacgttGCTCAACCTATGAATATTACACCCTACTCTCCTAAGGCAATCTACGGCGCAATGAAGTGCGGAGCGTTAA

Protein

Uniprot

Uniprot term	Description
Q9JMA7	Cytochrome P450 3A41 OS=Mus musculus OX=10090 GN=Cyp3a41a PE=1 SV=2
P05183	Cytochrome P450 3A2 OS=Rattus norvegicus OX=10116 GN=Cyp3a2 PE=1 SV=2
Q64481	Cytochrome P450 3A16 OS=Mus musculus OX=10090 GN=Cyp3a16 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05729	NACHT	NACHT domain	Domain	Interproscan
PF00067	p450	Cytochrome P450	Domain	Interproscan
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036396	Homologous_superfamily	Cytochrome P450 superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR007111	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR001128	Family	Cytochrome P450	Interproscan
IPR017972	Conserved_site	Cytochrome P450, conserved site	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR002401	Family	Cytochrome P450, E-class, group I	Interproscan
IPR050705	Family	Cytochrome P450 3A	Interproscan
IPR038359	Homologous_superfamily	Connexin, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24302	CYTOCHROME P450 FAMILY 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004497	Molecular Function	monooxygenase activity	Interproscan
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008395	Molecular Function	steroid hydroxylase activity	Interproscan