Gene detail

Detailed information of aacu_s0153.g2.t1 in Acropora acuminata

Genomic Location: sc0000153_pilon:14276...22100
NR annotation: XP_029194280.2, calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aacu_s0153.g2.t1

tattccttttagctcgacctgtacaagttgaacaactcataaaccactgtttcacgacccgtatgagtcatggacttgtatatacaccctaagtcaccctatacacttctcaaactgtgcgactcatgaaccattgtttcacgacttgtacagtttgtgaaacaatggtttgagtcatacagtttgtgaactgcatatcattggagggacttttggGCTCTGACACTTTCAGAACGAAGTATAttcggcagaattgcttatcagtatgcatatatctgtgcagttcagcaatagtatgactcgtgaaccattgtttcacaacctgtaggggtcgtacgagtcatgtcaagccattcatggttgtatcttttcgacagtattggacaaggatGGAATAATTTAGCCATTTTGGAGTATTAAAAACATCAGTGCTTGTCAGGGTATGAGCAAACCTGCATATGTTGACAATGAAATGCTTCAACTCACAATACACCAATAACAAGGTTGTGGAAAATACTATGAGAAGAGGGACTTATAGTATTAAACCTAACCTCAGCTACACCAAGGTATTTGCTTTCGTATTGCATACTGTGTACTGCCCAATTGCAAGAAGACAAGTGTTTACCAGGGAAGAAAAAAAAAATGATAGAAAACAGAGATTCTTCTTACACTTGTGTTTTGGTACAGGGGCAGACACACTCCGTTGTTTAGCTTTGGCAACAGTGGATCAACCTATTCCCCCAAGTGAAATGGACCTTGAAGCATCTGAAAAGTTTGCAGGTTATGAGAGCAACATGACATTTGTTGGTGTAGCAGGCATGTTAGATCCCCCCAGAAAGGAAGTTAAGGATTCCATTGAGAAATGCAGAGGTGCAGGAATCAGAGTCATAGTCATAACTGGTGACAACAAGGGAACAGCTGAAGCTATCTGCAGAAGAATTGGCATTTTTGGACCCGATGAGGATACAACAGGTTTGTCATATTCAGGGCGTGAGTTTGATGATTTAACACCAGAAGAGCAGAGGATGGCTTGTTTAAATGCAAGATTGTTTTCACGAGTTGAACCATCTCACAAGAGCAAGATTGTTGAATATCTTCAGGCTGATGGTGAAATATCAGCCATGACAGGGGATGGGGTCAATGACGCACCGGCACTGAAGAAAGCCGAGATTGGAGTGGCCATGGGGTCTGGTACAGCTGTGGCAAAATCTGCTTCTGAAATGGTATTGGCCGATGACAACTTTTCCACCATTGTAGCAGCTGTAGAAGAGGGAAGATCTATTTATGATAACACCAAGCAGTTTATTCGCTACTTGATTTCCTCAAATATTGGAGAAGTTGTTAGCATTTTCCTGACAGCTGCCCTTGGAATGCCTGAAGCACTCATCCCTGTGCAGTTGTTATGGGTAAATCTTATGACTGATGGGCCTCCTGCCACAGCACTAAGCTTTAATCCTCCAGATGTAGACATCATGATGAAGCCGCCACGCAAGGCAAAGGAAGCTCTTATAAGTGGCTGGTTGTTCTTCAGATACTTGGCCATTGGAATCTATGTTGGTGTTGCTACTGTTGCAGCCTCCGCTTGGTGGTTCATGATTTATGAAAATGGACCAAAGGTTTCTTATTATCAACTAACACATCACATGCAGTGCACCACTGATCGTACAAACTTTGATGGCGTAAACTGTGAAGTATTTGGTGATCTTCATCCAATGACTATGGCACTCTCAGTGCTTGTTACAATAGAAATGTTCAATGCACTAAACAGTTTGAGTGAAAACCAGAGCTTGTTTGTGATGCCCCCTTGGCGGAACCCTTCTCTTATAACAGCCATTGCTGCTTCATTCATCATGCATTTTGTCATTCTCTATTTTAAGATAACAAATACGATTTTCCGTATAACACCTCTAAATTGGGATGAATGGGTAGCAGTTCTTTACTTCAGTTTCCCTGTTATCATATTGGATGAAGTTCTCAAGCTTTTCTCCAGAATTATAGCTGAACCTTCCCATCCATCTCCAAAAACAAAAGTGAAGTCCAACTAACCACTGAAAGAGGCATGCCGGTCGTGCTAGCTCCGATGCGTGCAATAATTCAGGCTCATGACTTTGGAAATCTGCATCTCGGGCATCCCTGGAGTTGCCATTATTGCAGCTAGAGCTTTGCACCATTTTAAAAAGATGTTAACCTTTTATTATCGATAAATACTGGGTTTATTTTTAAGCTGTCGCTTGGATGAAATTGTCCATGATAAAAATGAGTATGGTTGCTGGTTTTCTCTTGTCCTCATGAGGTAGCTTGGGATGACTTTGTTGCATTTGACTGGTGCACGCTTTTGAAGAATGCAATAACACTGTTACTGCGGGCTATACAATTGACTAAAATGCTAAATAACTTGCTGTGTGCTGTTCATGAAATTCCTCCCCTTGAGGCATTTGCACTTGGCCTTATATTTTACGTAGCGACTTGCACTTATTTATTTAATCCAACCTATGAAAGGCAAAATTCCGTGGAAATTAAGACGAAAGAATGATCCTCACTCATTCTTCCGTTCTTGTTATTACATTTATTACATCTGTTATTTGCACTTCTTTTTACCATTCATTTCTTTTAACAAAATTAGTCATTATAGTTACTATCTTCATTAGGCAAGTATACATTTGAAATTATCTTTAACTTGAACATTGTTCGCCTCTAATGTGGCTCAGAATAAATACAGGCGAGAGTGGTACTGTATTCACAGAGAATGAAAGCACTTTCAGGATATTTGTAAttataagagagattaagcatgacgtttacggcaaacggcaagatgaaattttctttttaccaaaataaggagaaacttgatttatttaagctcttttcttgtctgttacctaaacatatcgagtaacttctcaagagtgagacaagttgaaacacgttaattttcatgcttttatgacacgcagctgcctattgtttgtcgtttgccgtaaacgtcatgcttaacctctCTACAGTTCCAAGGAACCTTGTTTCAATACAGGATTCAGTGCGATAACTTTGACACCGGTATTTTACCAGACGTTTAGTGCCTTTTCTTGTTTGAGTTGGGCCAAGCATCAACNNNNN

Protein

Uniprot

Uniprot term	Description
Q7PPA5	Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type OS=Anopheles gambiae OX=7165 GN=SERCA PE=3 SV=5
P22700	Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type OS=Drosophila melanogaster OX=7227 GN=SERCA PE=1 SV=2
P35316	Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type OS=Artemia franciscana OX=6661 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00689	Cation_ATPase_C	Cation transporting ATPase, C-terminus	Family	Interproscan
PF00702	Hydrolase	haloacid dehalogenase-like hydrolase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006068	Domain	Cation-transporting P-type ATPase, C-terminal	Interproscan
IPR001757	Family	P-type ATPase	Interproscan
IPR023298	Homologous_superfamily	P-type ATPase, transmembrane domain superfamily	Interproscan
IPR023299	Homologous_superfamily	P-type ATPase, cytoplasmic domain N	Interproscan
IPR023214	Homologous_superfamily	HAD superfamily	Interproscan
IPR036412	Homologous_superfamily	HAD-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42861	CALCIUM-TRANSPORTING ATPASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005215	Molecular Function	transporter activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0005388	Molecular Function	P-type calcium transporter activity	Interproscan
GO:0006874	Biological Process	intracellular calcium ion homeostasis	Interproscan
GO:0015662	Molecular Function	P-type ion transporter activity	Interproscan
GO:0016021	Cellular Component	membrane	Interproscan
GO:0034220	Biological Process	monoatomic ion transmembrane transport	Interproscan
GO:0070588	Biological Process	calcium ion transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05853	ATP2A; P-type Ca2+ transporter type 2A	EC:7.2.2.10	Diabetic cardiomyopathy	ko05415	deepkoala