Gene detail

Detailed information of aacu_s0164.g7.t1 in Acropora acuminata

Genomic Location: sc0000164_pilon:77086...85765
NR annotation: XP_015763861.1, PREDICTED: homeobox protein Meis1-like isoform X3 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aacu_s0164.g7.t1

CGTACACATCTTTTCCTTACATTGAGTTGACGGGTTGTAAGTTTAGAAAGCTATCCAACTGTGTTAGCCCTAAACTGATTGTCAGAAGTTGGGATTAAACATTTGCAGCTTTTTTTACGATAACAATCCTCCACAATACGGCTCGTAACCCTGGAGCGGACTGGAAACGCATCGTATGGCACAATGGCCCTATGATGAAGTGGGCCCTTACCCAATGGACGTTGCAACCTCAATGTACGATCACGGTCGTTCCGGAGCTCCAATGCAGCATTTAAACCATACAAGCGCCACTTCTCCGTACCATCACCCGCCTGCTGCTGGAGGAGGAGTGTCGAGTGCTATGAGCGCTGTTTCAGATATTCAGAAACGAGATAAGGAGTTAATATATGGGCATTCACTGTTCCCGCTCCTCGCACTTATCTTTGAGAAATGCGAATTGGCAACATGCACTCCTCGCGAACCAGGAGCAGTTGGAGGTGATGTGTGTTCTTCTGCCTCATTCAACGAGGATATCCAGGTTTTTTCGAAGCAGTTCAGAAGCGACAAGACGATTTTTTCGTCCAACCACGAAGTCGATAGTCTGATGATTCAGTCGATCCAGGTTCTGAGATTTCATCTACTGGAATTAGAAAAGGTGCACGAGTTGTGCGACAACTTTTGTAAGCGCTACATTTCCTGCCTGAAGGGTAAAATGCCCATTGATCTTGTTATGGATGAAAAGGAAAATATTGGAAAGAGCAGAAGCGACAGCGAAACTCTGGACATCGATTCCCCGCCTGACAGCGTTCTACCACAGCTACCGAATACTCAGCCCTGGCAAGCAGGGCAAGGAGATGAACCAGCCGGCTCTGGATCGAACTCTCAAACGTCCTCTCGACCGCCTTCGAATTCTGGGGTCGATGGGCCTACGACTCCGGAAGACCCTTCGTTAAACACGTCTGTTGGTTCAGAAGATGGCACGGGTGACAATACGGACGATGAACAGTCAAAGAAAAGTCAGAAGAAACGAGGGATCTTCCCGAAAGCAGCGACAAATATCATGAAGGCATGGCTTTTCCAGCATTTAACGCATCCTTACCCATCGGAAGAGCAAAAGAGGTCTTTGGCCCAAGAAACTGGACTAACCATTCTTCAAGTTAACAACTGGTTTATTAATGCAAGAAGACGTATTGTTCAACCAATGATTGATGCCTCAAACAGAGCAGGGAAGTCACCGGTTGTCACCGTTTTCAAGTCAAGACGCCGGAAAAACTCTTTAGGTCAAGGTCTTCCTTCACCAGGCCCGAGATTTGGCCCTCCGGGGGCACCCCCAGGCTATTATCCTGAGCAACATCACCCGCCTCCCCATACCAACTACCACATTGACGGAGGAGTGCCACAGCCAGCACATTTTGGACCAAGAGGCTATCTACAAACCGGTGATCCCTCAGTGAGTGGAGTTGGCACTATCCCTCCTATGTCGGCCATGGCAGGAGGACCACATTCTATGCACGCTCAAATGCCAGCTCATGCCTACAGATCCCCAATGCCTCCAACGTCAGTTCACCAAACCCAGCCAATGTACATCCCTGGACATCCTCATGCTATGATGATGCCCCCGCCGGGGCATCCCCACGCACATCCCCATCACCCCGGTCACCCGGGCCATCCAGGACAGCTCATACCTTCCACTCAAACTTCACCCACCTTAATTTCATCTGAAAATGTTTTGTCGATGTCGCAGCCTGTGATGGACATGCACTCGAGTTAAAAGTTGAAAGAAGAAATGAACGTTGTTGACTGATAAATTACTGCTTTGTTTTGTTTCGCTTTTCCTTCAATAGCGCTTTGACTAGCATTTTTAGACAATAGAAAGTTCACAAATTGAGAATTATTGGTACTGTTTTCTGAAAGTTTCCAAAACTTTCGGTTTTTATAGGAGAAAAATTCAATGAATAGAAATTGTGTGTTTAGATTTCCATTGAAGAAGTCCGTGTCTTCGTGTGTTGATTAGCCGCTCTCCTTGCAGTCTTCCTTTCAAAAAGGAGATTTGAGAAATGGATGAATCCCCCGTTTTGTATGATTTTAAAATAGTTTCTTCCGAAAAGGTGTTGATGTTGATATGATGTACGATATTTCTGTAATAACGACATTTTCTTAGTATTTTGTTTATATGTGATGCTATTTTGTAAATGCAAATAGATAGACTTTTAAAATTAACCCAGATATATTATATATACgatgatgaagatgatgatgatTGAAATTTATGTATTTGTTAAATGAGAATTGAAGAAAAAGAAATATAAATGTTCGCTCACTGTCGTCCTGGATGGTTATATTGAGCTGTAAGAAAAACCTTCTGAAGAA

Protein

Uniprot

Gene family

Uniprot term	Description
O00470	Homeobox protein Meis1 OS=Homo sapiens OX=9606 GN=MEIS1 PE=1 SV=1
Q60954	Homeobox protein Meis1 OS=Mus musculus OX=10090 GN=Meis1 PE=1 SV=1
O14770	Homeobox protein Meis2 OS=Homo sapiens OX=9606 GN=MEIS2 PE=1 SV=2

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16493	Meis_PKNOX_N	N-terminal of Homeobox Meis and PKNOX1	Family	Interproscan
PF05920	Homeobox_KN	Homeobox KN domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR032453	Domain	Homeobox protein PKNOX/Meis, N-terminal	Interproscan
IPR008422	Domain	Homeobox KN domain	Interproscan
IPR050224	Family	Three Amino acid Loop Extension (TALE) homeobox	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11850	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0001228	Molecular Function	DNA-binding transcription activator activity, RNA polymerase II-specific	Interproscan
GO:0001654	Biological Process	eye development	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008284	Biological Process	positive regulation of cell population proliferation	Interproscan
GO:0009880	Biological Process	embryonic pattern specification	Interproscan
GO:0009887	Biological Process	animal organ morphogenesis	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan