Gene detail

Detailed information of aacu_s0169.g38.t1 in Acropora acuminata

Genomic Location: sc0000169_pilon:514663...516727
NR annotation: ACF33142.1, SoxE1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aacu_s0169.g38.t1

CTCGATTGGATAGAAAATTATTATATCTGTGTTTTGAATAACCATACGCCAATATACGAATTGGCACGAAGTTCGATTTTTTCGATTCGAGGGAAAACTTCTGAAATTAGTAGACATAAAATGACGGAGGAAGCGGCGAACGGCGAAATCACGAACCCTGATCAGCGACAGCCCAAGAACATGGATTTAAGCAGCGCTATAGCAACTGCCGTGAATCATGTTTTGGACGGATACGACTGGTCTTTGATTCCGCTGCCTGTGAGAGTCAACGGTGGGCACAAACATAAACCGCACGTTAAAAGACCTATGAACGCGTTTATGGTTTGGGCACAAGCTGCTAGGAGGAAACTAGCCGATCAATATCCTCATCTGCACAATGCAGAACTTAGCAAGACGCTTGGAAAACTGTGGAAAATGCTTAAAGATGCGGAGAAGAAACCTTTCATCGAAGAAGCCGAAAGGCTCAGGCTGAAGCACAAGAGAGAGCACCCAGATTACAAATACCAACCGAGGAGAAAGAAACAGAAAGGAAACGGCGGACCAGATCAACCAGAGGCAACTATCTCGGCTGATGATCTTTTGAAAGTGCTGAAAGGGGATCCACAGGTGGTTGGAAAATCGTTGAGCCAGGATAGCAGCTGCGCCAGCCCTGACAGCAGTTTGAGCGACGAGGAAAGCAGCCCTGGGTCAAGCAGCCCGGCTACGTCGCCTCCAACAACTCCAACAGCTACGATCAAAGTTGAAGGGGGATCAAAATGCTCTGAGCCGAGTGTTCCGGATCCGGACATTCAAGCGCAGTCGTCTCCGACATTTCCACTCAAGAAATCAGAAAATAGCACTGTTCCTTCTACGACAAACAATAGCGGCAATAGCGCGATCGATTTCCACGTTGAAATGGGCGATCTAATGGTTGATACGACAGAATTTGACCAGTACCTTCACTCCTACACACAGCCCTTACAGATGCCCTCATCGCCGCCCTCTGTCACTTACACCTCACATGGCGGCGTTTATACACCAACTACTCACGGCGTTTCAAGGTTTGCGCCAAACAATAACCCTGTGACATCGAGTTATACGGAGTTCATGGAGCAACTTCAAAAACTGCCATCGTCCTACCCACCGAATCAGGTTGCTCCATCAGCCTTGCACCAAAGAAACCAATCAGAAAATGGTTCTTTTCCATTTTCATTCAACGAGCCAGCCGACGTAGCAAACGGTAGCAGTCCTCGATCCTTTGGAATCTCCAGTGTGCCTTCCCTCGCGATTCCCGCATCTTCGCCAGCCAACGGAACACAGAACCCGCAAAGCTCCCCTTCAAGACTTCACACTCTCATGTGGAAGTAAGCTTTTGCAATAATCTCGAACATTTCGGAGAATTTTGCTCCTATGGGGCACGAATTTTAACTTGTTGTTTTCAGCAGCTTTTTAAGTTGCTGGCTAAAACAATACAGAACTTTATCTTGTTTCTGATTTTTACAGAAAGTTGAAGTTCGACACGCCATAGTTTATAACAGCGACGTTTTCCAAAAATTCCATGTTTTGGTGCGCCGCTCGAGTCAAATTTCATGCTGACGTTTATTGTACACATCACGAAAGAGTAAAACACTCACTCACTTGATATTCAGATCTTTTTATTTTTTGAGTCGTTGTGAGTAACGTTTGGAAATTTTTCGCCATGTTGAGGTTTAGAAAATTGTTGGCAAATGTTGCTTTTTGCGAGAGAGTTAAGTTAGCAAGCTGATGCTCATTAGTTACTGCTTAGCTTATGTAATTTCTAATACATGAGCTTGCTTCCCAAAAGAAACTGTGATTTATCACCCTTAGATCACCATGTACATAATTAATGTGAATAGAGATGATAGCTTTTGAAAAATCGTAGCTTTAGAAGTAGAAAATTTTTACTGATTCAATTTTGCCAAACCTCGAATTTCTGTGACTGGCGTTTATATTTTTTGGCAAAATGAATAAAACTACTTTTGACGTGGAAAAAAGTTTATGTGTACTTGTTTGGCTGACCCATTGCCATGCTTGAAGATTTAAGCTGTCTTGTTGCTGTCGCAAG

Protein

Uniprot

Gene family

Uniprot term	Description
F1LYL9	Transcription factor SOX-9 OS=Rattus norvegicus OX=10116 GN=Sox9 PE=1 SV=2
P48434	Transcription factor SOX-9 OS=Gallus gallus OX=9031 GN=SOX9 PE=1 SV=3
Q04887	Transcription factor SOX-9 OS=Mus musculus OX=10090 GN=Sox9 PE=1 SV=2

Gene family	Subfamily
Transcription Factors Family	HMG

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505	HMG_box	HMG (high mobility group) box	Domain	Interproscan
PF12444	Sox_N	Sox developmental protein N terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR009071	Domain	High mobility group box domain	Interproscan
IPR050917	Family	SOX Transcription Factors	Interproscan
IPR022151	Domain	Sox developmental protein N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45803	SOX100B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18435	SOX9; transcription factor SOX9 (SOX group E)	-	Transcription factors	ko03000	deepkoala