Gene detail

Detailed information of aacu_s0180.g26.t1 in Acropora acuminata

Genomic Location: sc0000180_pilon:697255...699609
NR annotation: XP_044172004.1, uncharacterized protein LOC122956392 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aacu_s0180.g26.t1

CACTGTAAACCATGTAACATTTAAGACCAGAGAGAGAGGTTGGAAAAGCAGTAGAACTTGTGGCAAACGAAAGTTGTGTTGTGAGTTGTTGTAAGGAAAGGGAGATGGCAATGGCAGCGGGTGCTGAATGCGACTCAGGGAATTTGGTTGGGGTGATGTGTTCATATGATATGGGGTGGCAGAAAAGGGGAAAGGCCCATAATTCGTCTACAGGTCATGGGGCAGTGCTTGGTGTTACCACCGGGAAGGTCTTGGATTTTGCTACTAGGAATAAAACGTGCAGAACCTGTGCTGCATCAAAAAAGAATAACAAGCGCACGCCACACGACTGTCGGAAAAATCATTCTGGATCTTCCAAAATAAAGGAGTCAAATGTAGCCTGTGAACTTTTTAAGCGTGCTCCAGCAAGAGGAATCAAGTACGACTAATACATTGGTGATGACGATTCTACAACTTTTGCTCAGCTTAAAACAAGTGTTCCCTATGGCCTTGAAAAAATTTCTGATTTTGTTCACACAAAGCGCTACCTAAACACGAGGCTGTATAACTTGAACCAGCGCCAAAAACTCCCAAATTCATCTGTTCTCTCACAGAAGGTGAGGAATAACCGCGTCAAGTGCTTTGAATATTGTGTTCACCAGCACAAAAACCAACCTGAGGAACTTGCAAAAGCAATTCAATGCATTGTACCACACGCCTTTGGTGACCAAAACAAATGTGATGTTTTGTGGTGTCCCTACAAACAAAATCCTGCTGAATACACCCACCATGAGCTACCCTATGGAAAGGATTTGCATGGGAGCAGCCTTCAACAGGCATTGCAAGATCTTTTTTCTGAGTATGCTTCCCCAACAGTTGCCTCAAAATTAGCCCCCTGCTTAGACTCCCAGCGAAACGAGTCTTTGAATGGAACCATTGGCTCCAAGAACCTTAAAGTACGGCATTATGGAGGAAGTCAGAGTATTGATTTCAGAACTGCCTGTGGAAAACGAAAACAGGGAAGGAGTTAGCTATGAACACAATATTGGTCTTAACCTTGTCACAGAAGTTTGTACACAGAACATCAACTACGAGATTCTACAGAAAGTAAACAAACACACTTGTAAAACTGAACTGAAGGAATACGAACAACTAATCTCTTCTTCTGCAGTAAAGCCTCTACGCAAGGAAATACTCTTTGATCCTGAAAAAACCTACAAATTTGTTCTATTTGATATTGAAACAAGTTCAACGACAAGAAGAACCGAATTGCTCCAACTCTCGGCGATTACAGACGACGGAAAACGCTCATTCTCCGAATACATTCTTCCTAAACGCTCCATAAAAACTACCGCAACTGCTGTTCAAGACATCACTGTCAGATTTTCTGGGGATCAAAGAGTGTTATGCAAAGCTGGAAACCCTGTCCCAGCCAAGCCTTTACAAACCTGCCTTCATTCGTTCACGCAAGTTTCAGATGCTTGTTCTTCGAGTTTCATCGATTACTTAATCCTTTTAGGTCATAATGCTTCTGTTTTTGATACACCAAGACGGCTCTTTAATGGAGGTCATACCTTTACAACTAAGCTTAACGAAATGAAAGTGTTATTTGTCGATAGCCTGCCAGTATTGAAGGTCCTACGAGATGAGCTGAACAGCGATTTGCACACTGCAACAGGCAAGTTGGGCGATGTTTATGAAGCACTGTTTTCTGAAGAGTTTGACGCTCATTACGCTTTAGAAGACGTCAAAGCCCTCAGAAAAATCCTCTTTATCGCTCCACTGCAAGTTCCAAACGAGACACTGGTCAGTCACGGCAAATGTACATCGCCGAATAACGCCTTCGAACAAGCCACCTTCTTGGAACGACGCCAAGATACCATTCACTCGTATGACGGGAAGCTTTACTCGACAGACCAAGGCTGGAAAGAATCGCTTTCGATAAGCATGATCCAGAAGATGGCTGATGCTGGTCTTTCGTACCACACACTCCAAGCTCTTTACGAAAAATATGGCCTGAACGGATTGTATGGAGTACTTGCTTTGGCGCCAACCACCAGTCTTGCAGAAAGAAAGGTTTCAGAGTGACAGCCAACAAGAGGATTCTCTCCATGATACTACGACATTTTCAAACACCCTAACGTTAAGCAGTATGAATCTTAAACATTTATCTCCTGAGATGTTTAACT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR040393	Family	Three-prime repair exonuclease 1/2	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13058	THREE PRIME REPAIR EXONUCLEASE 1, 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000738	Biological Process	obsolete DNA catabolic process, exonucleolytic	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008296	Molecular Function	3'-5'-DNA exonuclease activity	Interproscan
GO:0008408	Molecular Function	3'-5' exonuclease activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20009	DRONC; caspase Dronc	EC:3.4.22.-	Peptidases and inhibitors	ko01002	deepkoala