Gene detail

Detailed information of aacu_s0186.g16.t1 in Acropora acuminata

Genomic Location: sc0000186_pilon:174536...184683
NR annotation: XP_029198452.2, formimidoyltransferase-cyclodeaminase-like isoform X1 [Acropora millepora]
Species abbreviation AACUM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

aacu_s0186.g16.t1

TCCGTGGTAAAATTATTTTCATAGACCATGCCTAAAATCGTAGAATGTGTTCCGAACTTTTCCGAAGGACGAAATAAAGAAGTGATCGATGCGATAGCGCAAGCTATTGCTGTAGTAGATGGTTGTTCGCTTCTCGACGTGGACCCTGGCACATCTACAAATAGGACGGTTTACACGTTTGTTGGTTCCCCAGAGAGTGTGGTAGAAGGCGCTCTAAACGGAGCAAGGTGTGCTCTGCAGCTGATCGATATGCGGAGCCATCATGGAGAACACAAAAGACTTGGGGCACTGGATGTTTGTCCATTCATCCCCGTTCAGGGTGTGACCATGGATGAGTGTGTTAAATGTGCAAAATTGTTTGGTGAAAGGGTTGCTCAAGAACTTGCTATCCCAGTTTACTTGTATGGTTATGCATCAGACAAAGAATACAGGAAAACAGTGCCACAAATCAGGGCAGGAGAATATGAAGGACTTTCCAAAAAGATCAAGAAGGAAGAATGGAAGCCAGATTATGGCCCATCGGAGTTCCTTCCCTCATGGGGGGCCACTATAGCTGGAGCAAGAAAGTTTTTGATTGCATACAATATTAACATCTTAGGAACAAAAGAACAAGCTCATCGACTGGCTTTGAACCTGCGAACACAAGGAAGAGGAGTCGACAAGCCTGGTCGTCTACAAGAAGTGCAAGGCATGGGATGGTACCTGGATGAAGCAAACCTAGCACAGGTGTCATTAAACCTGTTGGATTATGAAAGGACCAACATACAAACTGCTTTTGAAGAATGTTCAAAGGATGCAAAGGAATTAAAGCTTGCAGTTTGTGGATCACAAATTGTTGGTCTTGTGCCTCTTGGTGCCATGCTGTCAGCTGCAGATTACTTCATTGAAAAGGAAAATCTCTTCATACTTAGCGAAGATCAAAAGATTCGATTGGTTACAGAAAGACTTGGACTGAGCTCTGTTACTCCCTTTGATCCTAAAACGAGAATAATAGAGTACCTGGTAGGAGGTGCCGACGATGGACCATTGGTGTCGTTACCTTTGCGACAATTTATTTATAGTCTCGGATCGCGCTCGTCTGCTCCCGGAGGGGGTTCGGCATCTGCTGCCATCGCAGCCATGGGCGTTGCTTTGGCAACTATGGTAGGCTGGCTCACCTACGGCAGCAAGAAATTCGAATCACTAGATTCACAGATGAGATGTTTAATCCCTCCACTGAGACAAGCGATGCTGGATTTTATACCAATGATTGACGCAGATACCAACGCGTTTAGTGGATTCATGGAAGCAAAGAAACTCCCAAAAACCACACCCGAGGAGGAAGAAATACGCGAGAAGGCCTTACAAGAAGGACTCAGAGACGCTGTGCAAGTTCCCCTACAAGTGATCAGAACAGCGACTAAAGTGTGGAATCCGATGCTAGAGCTTGCGGAAGTCGGAAACGTCAACAGCAAATCTGATCTACAGGTTGGAGCTCGAATTCTGGAAACTGCCGTCTGGGGAGCATTTTACAACGTTGAAATCAACTTGAAGGACATTTCCGATGAAGCGTTTTACAAACAGGTTTCTGAGGAAGCGCAGTCTTCTTTGGAAATAGCACAAGAGAAATGCCGAGAAATATTAAACGTCCTCGAAAAACGAAAGTCTTGAGCTGAGCGCCTCGTCATTCGTTTGTTAACCGTCAATGAAATGTTGCGAATCACCGGTGGCTCACTCGTGTAATGGCGGGATTGCATTGCAAACTTATTTAAATTGTTAAGATTAAAATAATTATTCTAATTACCTCGTCGTCCACATTATCATGTGCAACTTGAGGTTTTTGTGAAGAACCATATGAATTGTATCGTTTGTTAAGCGGCAATAATATCAGGTTGCAATGGTGCAATTTTCAGATGGATACCTTAGACATTTGTGTAATAGAGTGCGTTGGGAACTTATTTATGACGGTAAAATTTCTATTTATTTTTTATGGTACCTCTTGTATAAGCATCACACGCGACGTGCAGTTGACATGTTGACAATAATAGACGCCAAGAACA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P53603	Formimidoyltransferase-cyclodeaminase OS=Sus scrofa OX=9823 GN=FTCD PE=1 SV=1
O88618	Formimidoyltransferase-cyclodeaminase OS=Rattus norvegicus OX=10116 GN=Ftcd PE=1 SV=4
O95954	Formimidoyltransferase-cyclodeaminase OS=Homo sapiens OX=9606 GN=FTCD PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006121 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04961 all species →	FTCD_C	Formiminotransferase-cyclodeaminase	Family	Interproscan
PF07837 all species →	FTCD_N	Formiminotransferase domain, N-terminal subdomain	Domain	Interproscan
PF02971 all species →	FTCD	Formiminotransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036178 all species →	Homologous_superfamily	Formimidoyltransferase-cyclodeaminase-like superfamily	Interproscan
IPR037070 all species →	Homologous_superfamily	Formiminotransferase, C-terminal subdomain superfamily	Interproscan
IPR007044 all species →	Domain	Cyclodeaminase/cyclohydrolase	Interproscan
IPR022384 all species →	Homologous_superfamily	Formiminotransferase catalytic domain superfamily	Interproscan
IPR037064 all species →	Homologous_superfamily	Formiminotransferase, N-terminal subdomain superfamily	Interproscan
IPR013802 all species →	Domain	Formiminotransferase, C-terminal subdomain	Interproscan
IPR012886 all species →	Domain	Formiminotransferase, N-terminal subdomain	Interproscan
IPR051623 all species →	Family	Formiminotransferase-cyclodeaminase	Interproscan
IPR004227 all species →	Domain	Formiminotransferase catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12234 all species →	FORMIMINOTRANSFERASE-CYCLODEAMINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0044237 all species →	Biological Process	obsolete cellular metabolic process	Interproscan
GO:0005542 all species →	Molecular Function	folic acid binding	Interproscan
GO:0016740 all species →	Molecular Function	transferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13990	FTCD; glutamate formiminotransferase / formiminotetrahydrofolate cyclodeaminase	EC:2.1.2.5 EC:4.3.1.4	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.