Gene detail

Detailed information of aacu_s0189.g28.t3 in Acropora acuminata

Genomic Location: sc0000189_pilon:486543...507291
NR annotation: XP_029204996.2, DNA ligase 4-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aacu_s0189.g28.t3

TCACACCTCTTATTGCCGACTGTTTCACAAGCTCATTGCATTCCTGTATATTGGATGGTGAAATGATTGTGGTTGATCCAACATCAGATGTTTGGCTATCAAAAGGGATGAACGTGGATGTAAAATCATTATCTACTTATGAAAATGCTAGCTACCATCCTTGTTTCATTGTGTTTGATATCCTTGTCATCAATGACAAAAAACTTGCCAATGTCCCTCTGCGTGAAAGAATCAAAACAATGGAAAAGTTGAAAAGTTGATGAACAATGAACCATTTTACATAGAAACAAAAGTCGATGGGGAAAGAATGCAACTTCATAAAGAGAAAAATGCGTTCATGTACTTTTCAAGAAGTGCTAATGACTACACACACGTATTTGGGTCTCAGCCATCCTCTGGGTTTCTCACACCTCTTATTGCTGACTGTTTCAGCTCATTGCATTCCTGTATATTGGATGGTGAAATGATTGTGGTTGATCCAACATCAGATGTCTGGCTATCAAAAGGGATGAACGTGGATGTAAAATCGTTATCTACTTATGAAAATGCTAGCTACCATCCTTGTTTCATTGTGTTTGATATCCTTGTCATCAATGACAAAAAACTTGCCAATGTCCCTCTGCGTGAAAGAATCAAAACAATGGAAAAACTACTGAAACCAAAGCCTGGATATTTACAGTTTGTGGAAAGGCAGGATGCTGCAACCAGAGGAGATGTTGTTAAAGCTCTTAATGAGGCGATTGATAAAAGAGAAGAGGGACTGGTCATTAAATCGCCTTCTTCTGTTTACAAACCAAATCTGAGAAGTGGAAGTGGCTGGCTGAAAATTAAGCCTGAGTATGTGGATAGTTTGAGCGATGAGATGGATCTCCTTATTGTTGGGGGCTATTTTGGAGTTGGTCGTCGCAGTGGAATGATCTCTCATTTTATGTGTGCCGTGGCTGTGTCGTCAAGTATCCCAGGCCAGCACCCTTCAGTCTTTCACTCATTTTGCAAGGTTGGAACCGGTTACACAATGAATGAGTTACATGAGCTGGACCAGTTACTGCATCCACATTGGCGGCCATTTGACACTAAAAGACCACCTGAAACAGTTATTTTAGCTCCTGGATACAAAGAAAAACCAGATGTGTGGATTGAGCCAACTAAATCAAAAATTGTTCAAGTGAAAGCTGCAGAGATCATCGCTTCAGATAAGTTCAAAACTGGTGTCACACTTCGTTTTCCAAGAGTGGAGGCAATAAGGAAAGATAAAATGTGGTATGAATGCTTGAGTTCAACGGAACTTGAAAAGCTGAAATCGATGGCTGAAGGAAAGTTGACTTACCAACACACAAATGCAGAACATTCACATGAACCTGCAAGGAAAAGACGAAAGGGGGTTACAAGGAATGAGCGCGTGACCAGCGTAGCAGAGCATTTCAAACCAGCTGATCTATCATCTGTGGAACAAGTGTCTCAACTGTTTGAGGGCAAAGAATTTTGCATTGTGACTGGTCCAGCATCACATCCCAAGGCCATGCTGGAGAAAAAAGTTGCAGAGAATGGAGGCTCATGTACTCAAAACCCATCGGCAGAAACGTATTGTGTCATTGCTGAAAGAATCAACGTCAGAGTGAAAAATATTATCAGTCAGAAAAAATTTGATGTAGTTCAAGCATCGTGGCTTATTCAGTGCTTGGAAAAGAGACAGCAGAGTCCATGGCAACCCAGTGACATGTTGTATAGTTCACCAGCAACCGCTGACAAATTCGCTGAGGAATATGATCGCTATGGCGACAGCTTCACCCAGGATGCGACCGTGGAGTCTCTGGAAGAAGTTTTCAAAAATGTCCAAAGTCAGAACTCTGCAGTTTCTCTATCAAGAGGAGAGATCCAAGACGTAATGGAACACTATTTCCCAGATAATTCTCCATTAGGCCTCTTCAAACACTGTAGGGTATACCTTGATCAATACGCTTGTATTGGAGAAAGCTCAACAGGGATACTAAACAGCAGTTTAGAGCTTGTCGGGTTAAAGCTTCGTTTGTATGGCGCACAAATCACAGATACTTTGGATGATGGAGTGACACACATCATTCTTGATGAAAGTGACCTCCGACGTTATGAGGAACTTCAAAGAGCATATGTGGCTTTGCCAAAGCGGCATTTTGTCACACAACACTGGGTAGCGCAAAGTGTACAAGCAAGCAAGCTCTTAACAGAAAGGAATTTTAGACCTGTTTAGTTTATGTGGCTTATTTCCATCGGGTCAGATATGCTAAAGTTAGCAAATGGTATCGCCAATATCCCGAGAAATAACCAGCTTACCCTGCACTAGAAAACACGGTAGGCTGACAGCACTAATAAAAAGCGCAACTTTACTCGTTCGTGCAGCGGAAAGATGATCAATGGCTGTATGCGAATGCTCGGAAATACTTCCGATGACGTCATTACGGCAGCAGAGGCAGCATGTTCTTGAGCCCATAGCTCCTAATAGATGAACTGTAAGTTTTCATTTTATTAGGTATGAAAAGTAAACTCACGGATGACAAGATTTGGCAAGGGCAGCCGTGGGTGTCCTGTGAAAGTGACGGTGAAGCTCTGAAGCCAGATGAGCAGACACGTTAATTCATCGGTACGGCAGTACACGATGAAATCAATCATCAAGATGAACTTGACTGTTTCGCAGTTTGTCAGATTCAGTAAGATTCTTTTGCTTGAGTCATTTCAGTCGCATTCAGCGAAAGCGAAAACAGCACTTCAAAAATAAAAAAAACATCAAAGGTTTTTTCCAtgcagaggggggaggaacagaatagggaggagggagaaatggcccaaaaaaagttgggaggagggagaaatagggggaaaaagtagggaggagggagaaaatgtgaggtaaacgtttagggaggagggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgagaaaatatgaggttaacgttaagggaggagggagaaattggctcaaaaagtagggaggagggagaaattggcccagaaagaagagagaagggagatttactcccctgttcctcccccctccATAGAGTAATGTTTTTCAAGCAAATGTTTGTGACCACTGTTTGAATATTGTTCTTGTCGTCAGATTCAGTACAAATCTACCAGTTGTATGATTGACATGTTGCTTTATCTAACAAAGAAGTTATTTTAAAATAAAACGAGACAATTGAT

Protein

Uniprot

Uniprot term	Description
Q90YB1	DNA ligase 4 OS=Gallus gallus OX=9031 GN=LIG4 PE=2 SV=2
G3GTP0	DNA ligase 4 OS=Cricetulus griseus OX=10029 GN=LIG4 PE=1 SV=1
Q8BTF7	DNA ligase 4 OS=Mus musculus OX=10090 GN=Lig4 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01068	DNA_ligase_A_M	ATP dependent DNA ligase domain	Domain	Interproscan
PF11411	DNA_ligase_IV	DNA ligase IV	Family	Interproscan
PF04679	DNA_ligase_A_C	ATP dependent DNA ligase C terminal region	Family	Interproscan
PF00533	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012310	Domain	DNA ligase, ATP-dependent, central	Interproscan
IPR001357	Domain	BRCT domain	Interproscan
IPR036420	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR029710	Family	DNA ligase 4	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR021536	Domain	DNA ligase IV domain	Interproscan
IPR012309	Domain	DNA ligase, ATP-dependent, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45997	DNA LIGASE 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003910	Molecular Function	DNA ligase (ATP) activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005958	Cellular Component	DNA-dependent protein kinase-DNA ligase 4 complex	Interproscan
GO:0006297	Biological Process	nucleotide-excision repair, DNA gap filling	Interproscan
GO:0006303	Biological Process	double-strand break repair via nonhomologous end joining	Interproscan
GO:0032807	Cellular Component	DNA ligase IV complex	Interproscan
GO:0051103	Biological Process	DNA ligation involved in DNA repair	Interproscan