Genomic Location: sc0000190_pilon:463850...481774
NR annotation: XP_044164572.1, exosome RNA helicase MTR4-like [Acropora millepora]
| CDS | |||||
| aacu_s0190.g32.t2 | |||||
| Transcript |
| aacu_s0190.g32.t2 |
| Protein |
| aacu_s0190.g32.t2 |
| Uniprot term | Description |
|---|---|
| P42285 | Exosome RNA helicase MTR4 OS=Homo sapiens OX=9606 GN=MTREX PE=1 SV=3 |
| Q9CZU3 | Exosome RNA helicase MTR4 OS=Mus musculus OX=10090 GN=Mtrex PE=1 SV=1 |
| O14232 | ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mtr4 PE=1 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08148 | DSHCT | DSHCT (NUC185) domain | Domain | Interproscan |
| PF21408 | MTR4-like_stalk | Exosome RNA helicase MTR4-like, stalk | Domain | Interproscan |
| PF13234 | MTR4_beta-barrel | Mtr4-like, beta-barrel domain | Domain | Interproscan |
| PF00271 | Helicase_C | Helicase conserved C-terminal domain | Domain | Interproscan |
| PF00270 | DEAD | DEAD/DEAH box helicase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027417 | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR012961 | Domain | ATP-dependent RNA helicase Ski2/MTR4, C-terminal | Interproscan |
| IPR001650 | Domain | Helicase, C-terminal domain-like | Interproscan |
| IPR048392 | Domain | Exosome RNA helicase MTR4-like, stalk | Interproscan |
| IPR025696 | Domain | Exosome RNA helicase MTR4-like, beta-barrel domain | Interproscan |
| IPR016438 | Family | ATP-dependent RNA helicase SKI2-like | Interproscan |
| IPR014001 | Domain | Helicase superfamily 1/2, ATP-binding domain | Interproscan |
| IPR050699 | Family | RNA/DNA Helicase | Interproscan |
| IPR011545 | Domain | DEAD/DEAH box helicase domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12131 | ATP-DEPENDENT RNA AND DNA HELICASE | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0003724 | Molecular Function | RNA helicase activity | Interproscan |
| GO:0006401 | Biological Process | RNA catabolic process | Interproscan |
| GO:0000460 | Biological Process | maturation of 5.8S rRNA | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0005524 | Molecular Function | ATP binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K12598 | MTR4, SKIV2L2; ATP-dependent RNA helicase DOB1 | EC:5.6.2.6 | Transfer RNA biogenesis | ko03016 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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