Detailed information of aacu_s0268.g31.t2 in Acropora acuminata

Genomic Location: sc0000268_pilon:328326...352610
NR annotation: XP_044177506.1, helicase SKI2W-like [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q6NZR5Superkiller complex protein 2 OS=Mus musculus OX=10090 GN=Skic2 PE=2 SV=1
Q15477Superkiller complex protein 2 OS=Homo sapiens OX=9606 GN=SKIC2 PE=1 SV=3
O59801Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC550.03c PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21408MTR4-like_stalkExosome RNA helicase MTR4-like, stalkDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF17911Ski2_NSki2 N-terminal regionDomainInterproscan
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan
PF13234MTR4_beta-barrelMtr4-like, beta-barrel domainDomainInterproscan
PF08148DSHCTDSHCT (NUC185) domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR048392DomainExosome RNA helicase MTR4-like, stalkInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR050699FamilyRNA/DNA HelicaseInterproscan
IPR040801DomainSki2, N-terminal domainInterproscan
IPR012961DomainATP-dependent RNA helicase Ski2/MTR4, C-terminalInterproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan
IPR016438FamilyATP-dependent RNA helicase SKI2-likeInterproscan
IPR025696DomainExosome RNA helicase MTR4-like, beta-barrel domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12131ATP-DEPENDENT RNA AND DNA HELICASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003724Molecular FunctionRNA helicase activityInterproscan
GO:0006401Biological ProcessRNA catabolic processInterproscan
GO:0055087Cellular ComponentSki complexInterproscan
GO:0070478Biological Processnuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decayInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12599SKI2, SKIV2L; antiviral helicase SKI2EC:5.6.2.6
Messenger RNA biogenesisko03019deepkoala

TOP