Gene detail

Detailed information of aacu_s0307.g28.t2 in Acropora acuminata

Genomic Location: sc0000307_pilon:260216...270120
NR annotation: XP_029184832.2, prolyl 3-hydroxylase OGFOD1-like isoform X3 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aacu_s0307.g28.t2

CAAAAGGAAAGGAATTTCATCAAAAGCTGAAACAGAGAAAACAAAGCAAAAAAGAATTCATCATAAAAACGATCTTTTGAGCAAATATTTTTTGCAAGAGGATTTTAAAATAAAATTTGGTGCAGCTTTCAGAAGTCAACGGAGTTTTTGCAAAAAAGGTGCAGTGATACATACAGTGCCTTTCAAGTGTTGTGTCATCCCCAATTTTATCTCAGATGAGGATATTTTGAGCAGATTAGAAACAGAATTGCTTGCATTGAAGTTCTTTGAAAAGTCCAATGACTTGTACAAATTTCACCAGAGTGATGATCTGAAAAAGTCCTCAAAGTCTCATATTGCACTTTTCAGAGATGCTTTGTACGGAGATTTTCGATTGTGGCTCCAAGAGATAACAGGATATAGTGATCTTACAGATCAAGTGGACATGTCATGTGCAAAATATGAACATACAGATGTTCTTTTGTGTCATGATGATGAACTAGAAGGAAGACGAATAGCATACATATTTTACTTAGTTCCCAAAGATTGGACAGCGAATGATGGAGGGACTCTTGATCTTTTTTGCACTGACGAACATGGCCAACCAGATCAGATAACAAGATCCTTACTTCCTCAGTGGAATTCCTTGGTTTTCTTTGAAGTGACTCCTACTTCTTATCACCAGGTCTCTGAAGTCTTGTCACTCAATAAAACGCGACTGTCTATTAGTGGATGGTTCCATGGTGATAATATTGACAGACCAGAACCCTACCAAGAACCACACCCTAAAGCAGAGACCCCCTGTGATTTAGAGGATGAGGTCCTTTTGGAGTGGATAAATGTGATGTATTTGGATCAAGGTGTTGTGAAGGACATAAGAACAAGATTTAAAGATGATTCAGAAATACAACTTCAAGAATTTCTAAAGGAGAAAAGGTACCAGGAGGTGCTGGAGGCATTGGGTGATGAAAGCATAGAATGGACATGGAAAGGACCAGCAAATAAAAGGCATTTTAAGGAGGCAGACTTGAAGTCTGTTCCAGCAATTGTGCAACAGCTGGCTAAGGTGATGCAGTCTCAGCCAATGTTTAAGTTTCTCCGAACATTGACTGGTCTGGAATTGGCTGCTGTGCCTCTCAGTGATGAGGATGAAAGCAGTGATGAAGATGACGATAAAGGCAAGAACTCCAATACAGAGAAAAAGCATGTACCCTGTTGCCATGGTCGCATACGTCACTGGTCACATGGGTGTTACACGTTGGTTCATGATACTGATCCAGAAGGTGCTGAGTTTGCTTTGGATGTTATTATATATATTGGAGGAAAAGGTTGGAAAAGTGATTATGGTGGTTACACTACGTATTTAACAAGCGGTGAAGATGAAGAGCTGTTGACGGTGCATCCTCAAGAAAATTCTTTGGCATTGGTGTACAGAGACAAGGAAACTGTGAGATTTGTAAAACACGTAAACCACTCGTCTCATTTTGATCAAGGGATTTCAGACAGAGACAAAGATTTCTGCGATTTTTGTTTCATTTACTTTGAATAGAATTAAACAAGTTATACCGTTTCATGATCAAGTTAGTaattaagcaatagggaactttttccgtgtttacataggctcatctaatcacgaagggagtcaatgggagaatacgagacagctatgcaaacctgtatataactgtcctctattgcttttataaaatatttctcgaaaataattcgagaaaagaaggaaaatgctgtttacttcatgattttcttgatactctctcatatttcctaccagccaatcaagacgctcatctgaaaacacagaaccaatcaaaattcgtgtgatgtcgcaaccttgtttacctactcacatctaaacacaccaattgaccaatgggagagcgcgtactatgctaattattttgtaaCAAAGGATCTTTTCTTTTGGTGAAAAGACGCTAAAACTTAATGATGTTGATATCAGCAGATTGAATCTCATTGACTCATTGGATCGTCTTGACTTGTATCGTTGTTTGCTTTGCTGGTTCTGTAGCAGAGGCAGTCATTTAATCGCCTGTTCCTTAGTGCAATCGAAAGCTCGCGTTGTATATTGCAATTAGACTTGGACCAGGTCAACCTCTTTACATCAGGGATACGGGTTTATCAATAATATGGGATGTTTGTCAGTAACCTTAAAGCGAGCTTCAGTTAGGTCGCGAAACGACCGAGCAAGAGACGCATTTGAAAGGCCGACTTTCGTAAGTGGCAACGCAAAACCGAGCTACTGAGAAAGATTTTGTTGAAGTCTACATTTTTGCGAGTACCCCGCTACGTGCGAGGCAAGGTAAAATTCTATGTTATTTCCTGGAAGGCACGGTATCGGGTAACACCGACCCTT

Protein

Uniprot

Uniprot term	Description
Q8N543	Prolyl 3-hydroxylase OGFOD1 OS=Homo sapiens OX=9606 GN=OGFOD1 PE=1 SV=1
Q3MI03	Prolyl 3-hydroxylase OGFOD1 OS=Bos taurus OX=9913 GN=OGFOD1 PE=2 SV=2
Q5R4R3	Prolyl 3-hydroxylase OGFOD1 OS=Pongo abelii OX=9601 GN=OGFOD1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10637	Ofd1_CTDD	Oxoglutarate and iron-dependent oxygenase degradation C-term	Domain	Interproscan
PF13661	2OG-FeII_Oxy_4	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051842	Family	Ribosomal subunit uS12 prolyl hydroxylase	Interproscan
IPR019601	Domain	Oxoglutarate/iron-dependent oxygenase, C-terminal degradation domain	Interproscan
IPR039558	Domain	Prolyl 3,4-dihydroxylase TPA1/OFD1, N-terminal domain	Interproscan
IPR005123	Domain	Oxoglutarate/iron-dependent dioxygenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12117	HISTONE ACETYLTRANSFERASE COMPLEX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006449	Biological Process	regulation of translational termination	Interproscan
GO:0019511	Biological Process	peptidyl-proline hydroxylation	Interproscan
GO:0031543	Molecular Function	peptidyl-proline dioxygenase activity	Interproscan
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0016706	Molecular Function	2-oxoglutarate-dependent dioxygenase activity	Interproscan
GO:0031418	Molecular Function	L-ascorbic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24029	OGFOD1, TPA1; prolyl 3-hydroxylase /prolyl 3,4-dihydroxylase	EC:1.14.11.-	Enzymes with EC numbers	-	deepkoala