Gene detail

Detailed information of aacu_s0335.g11.t1 in Acropora acuminata

Genomic Location: sc0000335_pilon:226536...232229
NR annotation: XP_044175370.1, uncharacterized protein LOC122958527 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aacu_s0335.g11.t1

CAAAAGGCAGAAAAGGTGGCACTGCGAACTGTTCCAGTAATCCTGAAGCATGGTAAGAAAAGAATGCTTGTAAATTGTTTTCTGGATGAGGGAAGTGATACTACATACGTCAATGAAGATGTAGTTGAGGAGCTCGGTGTCAAAGGGGAGAAAGAGTTGATAACTGTGAACGTTGCTAATGATCATGAAGTTCGTTTTCAATCCATGACATTTGCTATTGGATTAGAGAGTGTTGATGGGAGTGTGGACGCTAAGATTGTAGCACAGTCTTCTGAGAAAATCTGTGGCGGGATGAAAGCAGTTGATTGGGTGGAGATAAAGGGCAATTGGAACCATTTGCAGGACATACCATTTCCAAAGCTCGCGAATAGGAAGAAGATTGATGTGTTGCTCGGGACTGATAATTATCATTTGATGTACCCAGAGAAAGAAGTGGTCGGTGGAGTCGGGGAGCCATGTGCACGACTTTGTCCTCTAGGATGGACTGCAGTGGGGAGAATAAATATGGAGAAAACGGGAGCAGATCACAACACCAGTTTGTGTCATACCTTTCGTATGCAACAGTTTGGAGAGGTGGCACCGTCAGTGGAACAATCAGATGATTTAAACGCGATGTTGAAGAGATTCTGGGACCTGGAAACTATGGGAATTACACCTCCTAAACCTGCGATGACTTCTGATGAATCAGTAGCTTGGCACAAAACGGCTCAACAAGAGTGTTTTCCTGACGAGATAAGAGCACTTGAAGACGACAAGCCTCTCCCTAGCAAGAGCACGTTACTAAAGATCACACCCAAGTTGTATGGGGGACTCCTTCGATCCAACACGCGACTACGATATTCAGATGATTTGccagaagagacgaagtttccaataatccttccaaggaatcacatcgtaaccaggttaatcgtgaagtatcaccacgaggacgaaggtcacgagatgggagtaaactttacgttgaaccatctacaagagaagtactttgtacttcacggacgacaacaagtaaaaagatgtatcaaggaatgtgcggaatgtaacaggagattcaggggctgtcccgcgcgacaacagatggcaccgttacctagaatacgcttagagatcactcagaaaccatttacaaactgtgcaacagattttgcgggaccattctacacgatgcaaggacgaggcagaccacgaaggaaacgttacctttgcttatttgTgtgtcttcagacacactgttgtcacttagaaatggcaacttccctggagacggatgctttcttaaatgcgctgacacgtatggtggctagacgagggtggccgaagttgatgctcagtgacaatggaagtaattacgttggagcagcacgagaaatcaaggagttagtggataacatggaccaggacaaaattcaaaggcttacttccaaccaaggaattgagtggcagttcaatccaccggaagcaccacacttcggtggtgtatttgagagaatgatccagtcggccaagagggcaatatatgcaattttgaaagaagcagacgtcaatgacgaggagttacaaacagtgtttacaggagccgagagcttgttgaattccaggcctctaactacggtcagtggagatgtcaatgacgagacgacgttgaccccaaatcacttcttaattggccaaatgggtggcgagctagccccagatacagtcgatacgacggcggttagtgagcgtagacgatggagacgaatacaggagctgattcgtagagtatggagtcgttggatgcgagagtatttgccaagtattgggtcccggtcaaagtggttccaaccttcaaagaacctaacagtgggagatttggtgttggtgattgacccagacgcaccaagaagggattggaaacttggacgaatagaggcagtatatcctggtaaagatggATTAGTACGAGTTGTAGACGTGCGGACCAAAGGAGTAGTGAAACGAAGACCAATTTCCAGAATTTCACCATTGGAATCAAAAGAGTACTAAGTGACCGAATTAAACAGTGATGTTACTC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665	rve	Integrase core domain	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF18701	DUF5641	Family of unknown function (DUF5641)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR040676	Domain	Domain of unknown function DUF5641	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22955	RETROTRANSPOSON	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan