Detailed information of aacu_s0388.g1.t2 in Acropora acuminata

Genomic Location: sc0000388_pilon:4024...63725
NR annotation: XP_044180771.1, collagen alpha-1(I) chain-like [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P12107Collagen alpha-1(XI) chain OS=Homo sapiens OX=9606 GN=COL11A1 PE=1 SV=4
Q61245Collagen alpha-1(XI) chain OS=Mus musculus OX=10090 GN=Col11a1 PE=1 SV=2
P20909Collagen alpha-1(XI) chain OS=Rattus norvegicus OX=10116 GN=Col11a1 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF01410COLFIFibrillar collagen C-terminal domainFamilyInterproscan
PF02210Laminin_G_2Laminin G domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050938FamilyCollagen and Collagen-like Structural ProteinsInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR048287DomainThrombospondin-like, N-terminal domainInterproscan
IPR000885DomainFibrillar collagen, C-terminalInterproscan
IPR001791DomainLaminin G domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR37456SI:CH211-266K2.1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005201Molecular Functionextracellular matrix structural constituentInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K19721COL5AS; collagen type V/XI/XXIV/XXVII, alpha-Glycosaminoglycan binding proteinsko00536deepkoala

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