Gene detail

Detailed information of aacu_s0432.g4.t1 in Acropora acuminata

Genomic Location: sc0000432_pilon:63646...97742
NR annotation: XP_015766419.1, PREDICTED: nucleotide-binding oligomerization domain-containing protein 2-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

aacu_s0432.g4.t1

atgataaagcagcagcagcagctacacgaaaggagcaccaaagaatctctgaaatatgagcaagtttcagatccttttggccttttaaaatacacaaccattattcgccagctttatgaagatcgtgaagggtggctggcgcctttcccatggtgtaatgagtttcgattcaatctcgataacatttttacaagactcaagtttgtcagcagaagaaaagaacgaggaaaaaaagctgatgacagtgttgacatgtttcaaatatttcaaccgcatcaagaatgttcacagcctaggagggtattgattgaagggcagccaggcatgggaaagacaacgtattgtcacaagattgcttacgactgggcaaagaaacgaaaaggtagcgagtcatttcctgatgttaaacttctgctgctattaaaatgccgagacatcaactgtggcctatgggaggctattgatgaccagcttttaccgagagaagtgaacgaagaagagaaagagagatttttcacgtttgttagggatcaccagtcaaaggttttacttgtgcttgacggattagatgagttacccagtaaccaattatcaatctatacagatgtcattcaaggaagagttcttccagagtcttacatagtggttactgcgcgacacgaagttggagtgaaggtacgagaatgctgccactccctgtttgaggtggaagggtttaccaaggctgatgccaaagaattcattttgagatatttcaaagaagagcattttggaaaaatgttgttggacaagctggactctgatgaaaccctacgagaccttacaagaaatccgttaaacacagctcttctatgcctcttctgtgaagattttggaggaaaatttcccgaaagcagaacgctgctttaccttgaaatagttgagtgcgtgctgagaaggtacagggtaaagatgaaattaccagaaacagaccaagacctcgtagcattataccgagttgaactgaagacacttggccgtattgccaaggaggctttgtgcaacaatcgcatgaattttgatcagagcgcattccagggttcctcgagcaatctaaagtctggcctcggatttttgtcagtggaggctggacgaagcaaacgaagaccaggtcaaagctatgccttcctgcacaaaagcttccaagaattctttgcagctttttggcaatgttgtcagcttcttgatggagaaatctctgttgatagcttaattgctgactgcagatattattatgagttccagcaggtgctgatgtttacaagtggtatgttggctcaaaagtgcgaagcaacagtcaaggcatttatcgctggtatagctactcaagtcaacctggattttgctcgtttacaagttgcattggcttgtatcaatgaatgcaagagagagcagaatacttttgacaaagaaatggcacaattttttggctcacgtcttaaggttcagatggttgtttgcaaaggATTGACCAAGGAACATGTTGCTGTGTGTATTGAAACCTTAAAAACAAATTCCACAGTTTCAAGACTGCACCTCCTAGATTGTACCATTGATGATGCAAATGCTAGTGCACTGGCTGGGCAATTAAAAGAAAATTCAATGTTGACATCGTTGACCTTGTATTGTAATAAAATTGGAAATGTTGGTGCTGATGCACTGGCTAAAGGATTGAAAGAAACTTCAACACTGACATATCTGGACTTGTCTGTTAATGATTTTGGTGAAGTTGGTGTTGGTGCACTGGCTAAAGGATTGAAAAAAAATTCCACGCTTACATCCCTGCACTTGCATGCTAATGAATTTGGCGAAGTTGGTGCGGGTGCACTGGCTAAAGTATTGAAAGAAAATTCAACCCTCACATCCCTGGGCTTGTCTTACAATGTAATTGGCAATGATGGTGCTGATGCAGTGGCTGAAGGATTGAAAGAAAATTCAACACTCACATCCCTGGACTTGTCTGAGAATGATATAGGTGAAGTTGGTGCTGATGCACTGGCTAAAGGATTGAAAGAAAATTGGACACTCACATCCCTGGACTTGTCTGATAATGATATTGGCGAAGTTGGTGCTGATGCAATGGTTAAAGGATTGAAAGAAAATTCAACACTGACATAtctggacttgactgctaatgatattggcaacgttggtgctgacgcactggctaaaggattgaaagaaaattcaacactcaaatccctgcgcttgtctgataatgcaattggcgaagttggtgctgatgcacttgctaaaggattgaaagaaaattcaacactgacatcgttggacttgtctaataataatattggCAAAGTTGGTGCTGAAGCACTGGCTGAAGGATTGAAAGAAAATTCAACATTGACATAtctggacttgtctgagaatgatattggcgaagttggtgctgatgcactgggtaaaggattgaaagaaaattcaacactcaaatccctgggcttgtctgataatgatattggcgaagttggtgctgatgcactggctaaaggattgaaagaaaattcaacgctgacatatctagacttgtctgacaattatgttggcaatgttggtgctgatgcactggctgaagcactgaaagaaaatttaacgctgacatcactgaacttgtcttgtactggaattggcaatgacattgccgatgcactggctaaaggattgaaagaaaattcaaggctgacatcgctgaagttgtcttacaatttaattggcaatgttggtgctgttgcactggctgaaggattgaaagaaaattcaacgctgacatcacttgacttggcttttaatggaattcgaaatgatggtgctgatgctctggctaaagggttgaaagaaaattcaacgctgacatggctgaacttgtcttataatgcaattggcaatgacggtgctGATGCACTGGCTCAAGGATTGAAAGAAAATTCAACGCTGATAGAAATGTCTTTATATAGTAATATAATCGACAGGGATGTTGCCGCGGCATTAGAGAATCAAGGGCTAAGAGTCATGATGAATTATTGTTATGATTGTCGAAGGTGGCGCTGGATCAAGTCATTAGATTTACCATTTATCAATCGCAATTTAACATCATGGCATCTTTAA

Transcript

aacu_s0432.g4.t1

gtgaatattgtgttatttcttcttatttagagatgataaagcagcagcagcagctacacgaaaggagcaccaaagaatctctgaaatatgagcaagtttcagatccttttggccttttaaaatacacaaccattattcgccagctttatgaagatcgtgaagggtggctggcgcctttcccatggtgtaatgagtttcgattcaatctcgataacatttttacaagactcaagtttgtcagcagaagaaaagaacgaggaaaaaaagctgatgacagtgttgacatgtttcaaatatttcaaccgcatcaagaatgttcacagcctaggagggtattgattgaagggcagccaggcatgggaaagacaacgtattgtcacaagattgcttacgactgggcaaagaaacgaaaaggtagcgagtcatttcctgatgttaaacttctgctgctattaaaatgccgagacatcaactgtggcctatgggaggctattgatgaccagcttttaccgagagaagtgaacgaagaagagaaagagagatttttcacgtttgttagggatcaccagtcaaaggttttacttgtgcttgacggattagatgagttacccagtaaccaattatcaatctatacagatgtcattcaaggaagagttcttccagagtcttacatagtggttactgcgcgacacgaagttggagtgaaggtacgagaatgctgccactccctgtttgaggtggaagggtttaccaaggctgatgccaaagaattcattttgagatatttcaaagaagagcattttggaaaaatgttgttggacaagctggactctgatgaaaccctacgagaccttacaagaaatccgttaaacacagctcttctatgcctcttctgtgaagattttggaggaaaatttcccgaaagcagaacgctgctttaccttgaaatagttgagtgcgtgctgagaaggtacagggtaaagatgaaattaccagaaacagaccaagacctcgtagcattataccgagttgaactgaagacacttggccgtattgccaaggaggctttgtgcaacaatcgcatgaattttgatcagagcgcattccagggttcctcgagcaatctaaagtctggcctcggatttttgtcagtggaggctggacgaagcaaacgaagaccaggtcaaagctatgccttcctgcacaaaagcttccaagaattctttgcagctttttggcaatgttgtcagcttcttgatggagaaatctctgttgatagcttaattgctgactgcagatattattatgagttccagcaggtgctgatgtttacaagtggtatgttggctcaaaagtgcgaagcaacagtcaaggcatttatcgctggtatagctactcaagtcaacctggattttgctcgtttacaagttgcattggcttgtatcaatgaatgcaagagagagcagaatacttttgacaaagaaatggcacaattttttggctcacgtcttaaggttcagatggttgtttgcaaaggATTGACCAAGGAACATGTTGCTGTGTGTATTGAAACCTTAAAAACAAATTCCACAGTTTCAAGACTGCACCTCCTAGATTGTACCATTGATGATGCAAATGCTAGTGCACTGGCTGGGCAATTAAAAGAAAATTCAATGTTGACATCGTTGACCTTGTATTGTAATAAAATTGGAAATGTTGGTGCTGATGCACTGGCTAAAGGATTGAAAGAAACTTCAACACTGACATATCTGGACTTGTCTGTTAATGATTTTGGTGAAGTTGGTGTTGGTGCACTGGCTAAAGGATTGAAAAAAAATTCCACGCTTACATCCCTGCACTTGCATGCTAATGAATTTGGCGAAGTTGGTGCGGGTGCACTGGCTAAAGTATTGAAAGAAAATTCAACCCTCACATCCCTGGGCTTGTCTTACAATGTAATTGGCAATGATGGTGCTGATGCAGTGGCTGAAGGATTGAAAGAAAATTCAACACTCACATCCCTGGACTTGTCTGAGAATGATATAGGTGAAGTTGGTGCTGATGCACTGGCTAAAGGATTGAAAGAAAATTGGACACTCACATCCCTGGACTTGTCTGATAATGATATTGGCGAAGTTGGTGCTGATGCAATGGTTAAAGGATTGAAAGAAAATTCAACACTGACATAtctggacttgactgctaatgatattggcaacgttggtgctgacgcactggctaaaggattgaaagaaaattcaacactcaaatccctgcgcttgtctgataatgcaattggcgaagttggtgctgatgcacttgctaaaggattgaaagaaaattcaacactgacatcgttggacttgtctaataataatattggCAAAGTTGGTGCTGAAGCACTGGCTGAAGGATTGAAAGAAAATTCAACATTGACATAtctggacttgtctgagaatgatattggcgaagttggtgctgatgcactgggtaaaggattgaaagaaaattcaacactcaaatccctgggcttgtctgataatgatattggcgaagttggtgctgatgcactggctaaaggattgaaagaaaattcaacgctgacatatctagacttgtctgacaattatgttggcaatgttggtgctgatgcactggctgaagcactgaaagaaaatttaacgctgacatcactgaacttgtcttgtactggaattggcaatgacattgccgatgcactggctaaaggattgaaagaaaattcaaggctgacatcgctgaagttgtcttacaatttaattggcaatgttggtgctgttgcactggctgaaggattgaaagaaaattcaacgctgacatcacttgacttggcttttaatggaattcgaaatgatggtgctgatgctctggctaaagggttgaaagaaaattcaacgctgacatggctgaacttgtcttataatgcaattggcaatgacggtgctGATGCACTGGCTCAAGGATTGAAAGAAAATTCAACGCTGATAGAAATGTCTTTATATAGTAATATAATCGACAGGGATGTTGCCGCGGCATTAGAGAATCAAGGGCTAAGAGTCATGATGAATTATTGTTATGATTGTCGAAGGTGGCGCTGGATCAAGTCATTAGATTTACCATTTATCAATCGCAATTTAACATCATGGCATCTTTAATTGTTACTTATTGTTATACAGTTTTTAGCGGTGACTTTTAGCTGAGGAATCTGGCCAACTCATGGTCGCTGCATTTATGCAAAGAGTTTTGACAAATCTTCTTTCAGGATATTACGTGAATACAAATGTTGTTGGACA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF05729	NACHT	NACHT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR007111	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR052201	Family	Leucine-rich repeat-containing regulator of pluripotency	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24111	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan