Gene detail

Detailed information of aawi_s0001.g185.t1 in Acropora awi

Genomic Location: sc0000001_pilon:3928215...3933461
NR annotation: XP_029194187.2, putative leucine-rich repeat-containing protein DDB_G0281931 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

aawi_s0001.g185.t1

ATGGAAGGGCATGATTGCTTGAAACGTGTCAACGTATATCCCTTGTTTACATTAGACACATCTTTCACAACAGAACAGGAAAGAGAAGTTCTGCTTAACATTTACGCTCGAACAAACGGGAAAGGGTGGTTTCGGTCAGGTGGGTGGAATGACTCAACTGTGGGTGCATCCCACTGCTCCTGGTATGGTGTGACTTGTCACCCAAACACATCATATGTGAAAACGATTGTGCTGGCTTACAACAACCTCAATGGCTCACTTCCATCGAACATCTGGAAGATCCGCAATTTATTCTCTCTATGTGTACCTGGAAATCCTGATCTTGGAGGGGACATTAAAGACTTTCTCTTTGGTAATATGAGCAATTTGTTGACTGTCGTATTTAACGGAGCCTCGTTCACGGGGAATATCCCTAATGAGATTTCAAAATGGACAAATGTGCAAAACTTCCTTGGATGTCTCATGAGGGGCGCAGGATTCTCTGGTCATCTACCACAAGACATTGGAAATATGAAAGAGCTACGACTTCTTTGCCTTGGAGGAAATAACTTCTCTGGTCAAATACCTACAAGCATTGCTCGATTGAAAAAGCTTACGTACCTTGACCTACGAAACACTCCTGGCATGCTGCATGGAAACTTGAGTGACATATTTGCAATTACATCGCTAGAGTATTTACTGGTATCTGGAGTTCATCTGAGTGGAGGATTACCTTCGGTGTTTCCAAAACGGTTAGGATACGTTGTTCTACCTGGGAATAATATATCAGGAGAGCTTCCAAAAGCTATTACACCCTACTTATTTAACGTTGCCAACAATCAACTTAAAGGGGATATCCCTGGTCATTGGGTATTGGGGCCAAAGACCTTGATGTTAGATTTGTCACAGAACAAATTTTCATCAATTAACAAAGGAAAACCATGGCCAAACAATGCCTCTGCTGGTATTACGTCGTATCTATCCCTTGCAGGAAATCGCAATTTGTCAATAAATTTTACGAGCTTTTTGAGATTGTTCGACAAGTCCGGTTTTGCGCCAAGTCCTTCGATTTTGAATGTAAGCTTTTGTGACATCAAAAGTCCTCTTTTAGCAAATCTGCTATACATGGAAAGCATGTCCATATGTGATTTACGTGGTAACAACTTCTTCGGACCTATTCCATCATTTTTTGAGGATTTTTCGTTCTTGTCATATTTTGACGTCTCTTTCAATAACTTGAGTGGTAATCTCCCAATCGGAATTCAGAATTTGATTTCTCTTCAAAATTTTGATATTTCGGGAAATCCCTTGATGCGACATGAAGAGGATAGCTCTTCTTCTGTCTTCATTCCTGACTTGTTGCGAATGACAAAACCTCCTCAAGCAGACAACTTTACATGTGCCGAAGGACGTCTTTCTTTCAACAATGGACGCATACACGTTGATCCAACATTTTACGACTACAAATATTGCATCTGCGATCATGGTTTCTACGGAGACAAAGGCCTGTGCAAGAAATGTATGCAGGGAGGAATTTGCAATAGACCTACTATCAGCTCACCAGAGGAACTACGGGAAAATACTATGAAGATCCAGAAAGGCTATTGGCCATCACCCGATCCTAGAAATGCTACTCATTTGGTAGAGTGTCCAGTGATGGCTGCTTGCAATCCAGCGGGCTCCTGTACCTGTCAACTGACCACATTGGCCTACAATGACCAGGCATACTTTGGTATTCACCGATCAGTGTCATCGCTGATCACAACTTGTGATCATTCTTGCATCTGCTCTCCAGGAAACACGGACAGATTCTGTTCCCGCTGTGAAGAAGGATGTTATAAACTGGGAGGGCTTTGCTTTCAATGCAAATCAGGGGACTTAACTTACTATTTGATCTTTGTTCCAATTTTTGGCTTGTCTTTTCTTGTTTTGGTTTGGTCGTTTTTTCACTTTGACGTCCGTCCTATCAAATGGTTTGCTGTCACTGTACTTCATTTCTCGTTGATGTTGATCATGATGCTGCTTGAATTTCTTCCTGCATGGCTATTAAAACTAAACTTGGTTGTCTTTGTGCTATGTATGACGAGCAGAGGAAAAAACGCTCAATCGCTAATCAGCATTGCAGTATTTTACATTCAAACAACAGACTTCATGGTGTCCAGCGTCAACGTATGGCCTCCAAAGGTGATTGCAGCTCAAAGTTACTTAAGCAGCTACTGGAATTTGGTATTTCCTTCACTTTCTTGTGACTTACCTTCCCTCTTTACTCCAGTCGGAAAGCTTTCTTTCTTGCTTCTCTTACCAATAGTGTGCTTGACATTGGTAGGTGTTTATTTCATTGCTATGTTCACTTACAACAGATATCGTCCCATCGAAGGACGCATGGAAAATGTTCACTTCAAATGTCGCCAAAGCGCTTTCTTTACTCTTAGCTTCAGCTACTTTCCAATTGTGCAACAGACGCTTTCCAACTTACGTCCATGTCACAACGATCAGAGTGTTTTCTACATGCCAAACGAGCCATGGATAGAGTGCACCTCTTACACCTACTACAAGCTGAGAGCACTTGGCATAGTGTCTCTCATCTTCTATGTGATTGGATTTCCTTTGATTGTCATCTGTCTCCTTGTTCGCTTCTTTCCAAAAAGAAACTTGATGACTCCCGAAGATCGCAAGAAACTCGATGTCTGGCTCGGACCACTCTACTTACCGTACAAACCAAAATACCAGCAGTTCTTCGAGATCCTCATGCTTGTTCGCCGATTGATTCTTGCTGTAGCCTTGTCCATGATTTCGTCATCGACTCTGCAAACGTTTATTGTTTGGCTTGTCCTCATGACTTCGGCTCTTATCCAGATATGTCTACAGCCGTTTCAAAAACACCCAAGCAATATTGATCCTCCAACTTCAAATGAACAAGTGAAGTGCAAAATCATATTGCAAGATTTTTTCAGTGAGAATGTGATGGAGCCCACAGTGTTACTTGTCCTTTCCATGTCCTTTATGGTGCTGAGGTTTTCGGTCCTGGACAATAGTTACATTGGTGTTTTCGTTTGGCTGGTGATGATCATCAATGCAGGTATGTTCGTCATTCTTATAAGTGGCATCTTCTATCGCCTGCTTGGGCCGAGGAGTAGTAGACAACCGAATGATTGCGCTAACATGGATCAGATTGGAAGCGTTAATTCAAGGAGCGGCACAAACGAAGTGGACCAGGGCGAACAAGAAGAGGGAGAAAGAAGGCATTTGCTTCTAGCTGAAGGTGGCGATGGATATGTTTTGCATGTTAATTGA

Transcript

aawi_s0001.g185.t1

GAAGACACTCGCACCGCTTCAACACTGAGATACTTCAAAGCACAGTTCCATTTCCACAATGGGGAGAATAATTCTTTTCATCTGGTTTTTCTTTCAAATGAAGATTTTAATTCAATGTAGATGGCTTGAAACCCCGCTACATTGGCCTCGAGATACTTACGATTTTGGTCTATTCGAAGTAATGGAAGGGCATGATTGCTTGAAACGTGTCAACGTATATCCCTTGTTTACATTAGACACATCTTTCACAACAGAACAGGAAAGAGAAGTTCTGCTTAACATTTACGCTCGAACAAACGGGAAAGGGTGGTTTCGGTCAGGTGGGTGGAATGACTCAACTGTGGGTGCATCCCACTGCTCCTGGTATGGTGTGACTTGTCACCCAAACACATCATATGTGAAAACGATTGTGCTGGCTTACAACAACCTCAATGGCTCACTTCCATCGAACATCTGGAAGATCCGCAATTTATTCTCTCTATGTGTACCTGGAAATCCTGATCTTGGAGGGGACATTAAAGACTTTCTCTTTGGTAATATGAGCAATTTGTTGACTGTCGTATTTAACGGAGCCTCGTTCACGGGGAATATCCCTAATGAGATTTCAAAATGGACAAATGTGCAAAACTTCCTTGGATGTCTCATGAGGGGCGCAGGATTCTCTGGTCATCTACCACAAGACATTGGAAATATGAAAGAGCTACGACTTCTTTGCCTTGGAGGAAATAACTTCTCTGGTCAAATACCTACAAGCATTGCTCGATTGAAAAAGCTTACGTACCTTGACCTACGAAACACTCCTGGCATGCTGCATGGAAACTTGAGTGACATATTTGCAATTACATCGCTAGAGTATTTACTGGTATCTGGAGTTCATCTGAGTGGAGGATTACCTTCGGTGTTTCCAAAACGGTTAGGATACGTTGTTCTACCTGGGAATAATATATCAGGAGAGCTTCCAAAAGCTATTACACCCTACTTATTTAACGTTGCCAACAATCAACTTAAAGGGGATATCCCTGGTCATTGGGTATTGGGGCCAAAGACCTTGATGTTAGATTTGTCACAGAACAAATTTTCATCAATTAACAAAGGAAAACCATGGCCAAACAATGCCTCTGCTGGTATTACGTCGTATCTATCCCTTGCAGGAAATCGCAATTTGTCAATAAATTTTACGAGCTTTTTGAGATTGTTCGACAAGTCCGGTTTTGCGCCAAGTCCTTCGATTTTGAATGTAAGCTTTTGTGACATCAAAAGTCCTCTTTTAGCAAATCTGCTATACATGGAAAGCATGTCCATATGTGATTTACGTGGTAACAACTTCTTCGGACCTATTCCATCATTTTTTGAGGATTTTTCGTTCTTGTCATATTTTGACGTCTCTTTCAATAACTTGAGTGGTAATCTCCCAATCGGAATTCAGAATTTGATTTCTCTTCAAAATTTTGATATTTCGGGAAATCCCTTGATGCGACATGAAGAGGATAGCTCTTCTTCTGTCTTCATTCCTGACTTGTTGCGAATGACAAAACCTCCTCAAGCAGACAACTTTACATGTGCCGAAGGACGTCTTTCTTTCAACAATGGACGCATACACGTTGATCCAACATTTTACGACTACAAATATTGCATCTGCGATCATGGTTTCTACGGAGACAAAGGCCTGTGCAAGAAATGTATGCAGGGAGGAATTTGCAATAGACCTACTATCAGCTCACCAGAGGAACTACGGGAAAATACTATGAAGATCCAGAAAGGCTATTGGCCATCACCCGATCCTAGAAATGCTACTCATTTGGTAGAGTGTCCAGTGATGGCTGCTTGCAATCCAGCGGGCTCCTGTACCTGTCAACTGACCACATTGGCCTACAATGACCAGGCATACTTTGGTATTCACCGATCAGTGTCATCGCTGATCACAACTTGTGATCATTCTTGCATCTGCTCTCCAGGAAACACGGACAGATTCTGTTCCCGCTGTGAAGAAGGATGTTATAAACTGGGAGGGCTTTGCTTTCAATGCAAATCAGGGGACTTAACTTACTATTTGATCTTTGTTCCAATTTTTGGCTTGTCTTTTCTTGTTTTGGTTTGGTCGTTTTTTCACTTTGACGTCCGTCCTATCAAATGGTTTGCTGTCACTGTACTTCATTTCTCGTTGATGTTGATCATGATGCTGCTTGAATTTCTTCCTGCATGGCTATTAAAACTAAACTTGGTTGTCTTTGTGCTATGTATGACGAGCAGAGGAAAAAACGCTCAATCGCTAATCAGCATTGCAGTATTTTACATTCAAACAACAGACTTCATGGTGTCCAGCGTCAACGTATGGCCTCCAAAGGTGATTGCAGCTCAAAGTTACTTAAGCAGCTACTGGAATTTGGTATTTCCTTCACTTTCTTGTGACTTACCTTCCCTCTTTACTCCAGTCGGAAAGCTTTCTTTCTTGCTTCTCTTACCAATAGTGTGCTTGACATTGGTAGGTGTTTATTTCATTGCTATGTTCACTTACAACAGATATCGTCCCATCGAAGGACGCATGGAAAATGTTCACTTCAAATGTCGCCAAAGCGCTTTCTTTACTCTTAGCTTCAGCTACTTTCCAATTGTGCAACAGACGCTTTCCAACTTACGTCCATGTCACAACGATCAGAGTGTTTTCTACATGCCAAACGAGCCATGGATAGAGTGCACCTCTTACACCTACTACAAGCTGAGAGCACTTGGCATAGTGTCTCTCATCTTCTATGTGATTGGATTTCCTTTGATTGTCATCTGTCTCCTTGTTCGCTTCTTTCCAAAAAGAAACTTGATGACTCCCGAAGATCGCAAGAAACTCGATGTCTGGCTCGGACCACTCTACTTACCGTACAAACCAAAATACCAGCAGTTCTTCGAGATCCTCATGCTTGTTCGCCGATTGATTCTTGCTGTAGCCTTGTCCATGATTTCGTCATCGACTCTGCAAACGTTTATTGTTTGGCTTGTCCTCATGACTTCGGCTCTTATCCAGATATGTCTACAGCCGTTTCAAAAACACCCAAGCAATATTGATCCTCCAACTTCAAATGAACAAGTGAAGTGCAAAATCATATTGCAAGATTTTTTCAGTGAGAATGTGATGGAGCCCACAGTGTTACTTGTCCTTTCCATGTCCTTTATGGTGCTGAGGTTTTCGGTCCTGGACAATAGTTACATTGGTGTTTTCGTTTGGCTGGTGATGATCATCAATGCAGGTATGTTCGTCATTCTTATAAGTGGCATCTTCTATCGCCTGCTTGGGCCGAGGAGTAGTAGACAACCGAATGATTGCGCTAACATGGATCAGATTGGAAGCGTTAATTCAAGGAGCGGCACAAACGAAGTGGACCAGGGCGAACAAGAAGAGGGAGAAAGAAGGCATTTGCTTCTAGCTGAAGGTGGCGATGGATATGTTTTGCATGTTAATTGACAGAAGGTTATAGATCGAACTTCATGATTTCGGGAAATGTCGAACTGGAGTGTGCCTATTAGGCAAACTTGAAGAAATTTGTCGGATTTAGGATAAATCTTGCTTGTAACTCGAAACTGGGACAAAATATGATGGGAAAAATTATGACGTTGAGCGATTAGAATAAGAAATTGTTGCTTTGAAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00560	LRR_1	Leucine Rich Repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48065	OS10G0469600 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04855	CACNA1H, CAV3.2; voltage-dependent calcium channel T type alpha-1H	-	Ion channels	ko04040	deepkoala