Gene detail

Detailed information of aawi_s0002.g128.t1 in Acropora awi

Genomic Location: sc0000002_pilon:1923644...1928321
NR annotation: XP_029214036.2, putative uncharacterized protein DDB_G0281733 isoform X5 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aawi_s0002.g128.t1

NNNaaaaaaaaaaaaaaaaaaCTAGTTTCAATGTGTGGCAGTTGGTCCAGTGAATGTAATTTTGTGATGGTAATTCTTGACAAATTCATGGCTAAAGGACGGACACAGCATGCaataggccttttgtaactagcgatcacgtggtacaaatccgccatgctggagggcaagctcattattattcccgcactgggacattaaagcaaagggacctgaaccagtgaagcttgacttgcctttgttttgatgtcccagtgcgggaataataatgagcttgccctccagcatggcggattttgtaccacgtgatcgttagtcgcaaaagacctattACAGCGTTTTTTCTCGTTCTTTTGTTTTAGATTTAATTATCGCCATTGAGCTATGTAATAACAGAAAGTTGCAGAAACGTGTTAGTATGGTTGAGTTTCAAAAAGAAAAGTTAAGTTCTCTTTGCCAAGGGTCGAGTTTTGCTCATTGAGTGTCGAGTATTTCACGAGGTATGCGTTCTCGCTAGCGAGTTTTCGATTCTGGCTAAGCGAGTTTTCGATTTCTCGCTAGTGCGAAATTCATCACTCACTTGCGAGACTTCTCGTTAGAAATGGCTCGACACTCTGCAAAGAGAACTTAACTTTTCTTTTTGAAACTAACCATGCTTAGACGTAACTGTAACTTTGTTACTCGATATTGTTTACGAGAGTTGAAACCCTTTTGTCAGTAACGGCTTTCTATAGTTTTGACACACAGGTTGATCAGTGTTTGTGTGCTGACTAACTGTTGCAAGCAATAATAATGATTATGAGCCATAAATACTGAGAAGTATTTCTGCTCACTTGAAATGCTCGTCCCGGTGATAAGATCTTTTTTTGAAATAGTTTTCTTCTCTTGTTTACGATTACTGGAGGTGGGATGCCATTGTAGAATTGTGTTATCTGGAAGTTCAATACTCTGTGTTATTGTCAGAACGTTTAATTTCCGGACTCCTAATTTCCTAACGTGTTTGTGGCATTTTTTAAGCTTAAAATTCCCTCTGAATTGCTAACTAGAAATGCTTGCAATATTTTTTTGTAATTGAGGAATTTTATGAATTGTAAAAATTGTTTACCTATTATTAAGTTAGGGTATAGTATTTTCTTAACTGAAATATTTTTGCAAAATTACGAATTATTGTATTTTCGAAAGAGCGAATACTGTACTTAAAACAGCTGTGAAGAGACACATCAGGCGGCTCATCAGTCGATGTTTGCTCTTAAAGTATTTCGTATCTAACCAACTTAAGGAAAAAATAATAGTAGTCTTAATTATAATAACACATACACAGATAAAAAACAACCAAAGTGGAATATTTCATCAAGTTAGAAAGCCTGTATCAAGTCTAATTTTTTGACTTTTTATTTTATCCCCTGGAACGTTTTTGTAATCTGCGTTATATTTCGCTTTGACCTTTAGAAATGACTCGGAAGAACCAGATCatttatattatttatttcttgtctctatttgtttgctttgtttgtttCCTAGGGAACTCTGAGTGCTATTTTTGTAAACTTTAGCTGGTTTTGTCCTTTAATTTACTTCCCGCTCGTTTCTCTTTCATAAAATGTGTAGCAGTTTTGAAAAGAAAACAGAATAAAGAATTCCTCTTTTGTTTGATTAGGACTTACATTATTCTTCTTGAAGGGACAGAATCATTGAACCGCGCGATCAAATAGTTTTTTTCTACATAGCGACCCGTTAGAAAAGTACAGATCTTCACATAGCTAATCAACTTCTCCAAATTGCCTCCTATTTCTTGCAGTCATGTCAGAGGACGAACATGTTAACCCAAATAGCTATACTACGGGCTCAGTAAAATGGTTTAATCTGGCCAAAGGATTTGGTTTTATCACCACAGATGATGTACAAGAAGACGTTTTCGTTCATCAGATTTGCAGAGCTCTATTAATTCTAAAGGGTATCGAACCCTTCAAGAAGGAGAAAGAGTTCAGTTCCAGATTGTTAACTCAGAGAAAGGAAAGACTGCTATATTAGTGACGTCACCTGACGGTAGTCAACTAAAAAGAAAAGGACGCTTCAAGAAAGGCGCACGAAAATTCACCACTCTTTGTTACAACTGCAATAACAATGGACACAGAATGAAAAAATGCCCGTACGAAAAGCGTAACCTTCGAACTTGCCATAAATGTGGAGGCGATACTCATCTCATCAGAAGTTGTCCACAGCTTATGAAGACAGACAATCTTTCAAAATTATTAAGTGATTGCCCGCAAAATTAAGATACAACTAAGAG

Protein

Uniprot

Gene family

Uniprot term	Description
P55390	Probable cold shock protein y4cH OS=Sinorhizobium fredii (strain NBRC 101917 / NGR234) OX=394 GN=NGR_a00060 PE=4 SV=1
P41824	Y-box factor homolog OS=Aplysia californica OX=6500 PE=2 SV=1
P54584	Cold shock protein OS=Arthrobacter globiformis OX=1665 GN=csp PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	CSD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00313	CSD	'Cold-shock' DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR051373	Family	Lin-28 homolog RNA-binding protein	Interproscan
IPR002059	Domain	Cold-shock protein, DNA-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46109	PROTEIN LIN-28	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0031054	Biological Process	pre-miRNA processing	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan