Gene detail

Detailed information of aawi_s0003.g166.t1 in Acropora awi

Genomic Location: sc0000003_pilon:2741571...2759388
NR annotation: XP_029180001.1, 4-aminobutyrate aminotransferase, mitochondrial-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aawi_s0003.g166.t1

CCCGTGACAGCCGTGTGATTTGCGTTATAGTGTCAGTTTCTGTTGTCCTACAGGAAATGGCTATATTACGCTCTATGCGTTACCGGAAAAGTTTGCTGTGCCCTCAGCGCCTAGTTGAAGTATTATGCAATCAGAAGACAACATCTGTAGCCCTCTCCTTGGGTTCCACTACAGAAGATTACAACAGACCATTGGTGAAAACTCCAATTCCTGGTCCACGCTCCAAGGAACTACTTAAGGAGTTGTCTCAGATTCAGCTGACTCAGGGCATGTCTTACTGTGTTGATTATGAAAGGAGTAAAGGGAACTATATCGTTGATGCAGACGGCAACGTTTTACTGGATCTTTTTCAACAGATAGCATCACTTCCCTTAGGTTATAATCATCCTGCCTTACTCAAAGTTATGCAAGATCCAAAGACAGCTTCATCTTTTGTCAACCGTGCAGCATTAGGAGTCTTTCCACCAGTGTCATTCCTTCAAAATATTAAAGATGCTTTGTTAAGTGTGGCTCCACCAGGATTACCTGAGATTACCACAATGGCTTGTGGCACTTGCTCTGTTGAGAATGCTTTCAAGTTGGCATTCATAAATTACATGTCTAAGCATCGTGGTGATCCTGAACCTTCATTGGAGGAATTGAACACTTGCATGCTTAGTCAGTCTCCAGGAACACCTCCATTGGCAATTTTAGGCTTTGATAAAGGATTCCATGGCCGTACAATGGGAGCTCTTTCTACAACACGAACAAAAGCCATGGCAAGAGTTGACATTCCAGTATTTGATTGGCCAGTTGCTCCATTTCCTTATTTAAAGTACCCACTGGACAAACATGAAAAAGAGAACAAAGCAGAAGAACAAAGATGTCTAGAACTGACCAGGAAAGCCATTATCGATAGCAACAAAGCTGGAAAACCTGTTGCAGGAATCATTGTAGAACCTATTCAGGGCGAGGGAGGGGATAACCATGCAAGTGTGGACTTCTTCAGGTCTTTACGAAACATCGCCAAAGAGTTAGATGTGCTTTTGATCGTGGATGAAGTGCAAACAGGCTGTGGCAGTACTGGGAAATTCTGGGCTCATGAACACTGGGGGCTTGATGATCCTCCGGATATTGTGACCTTCGCTAAGAAGATGCTCATTGGAGGTTTTTACCACAAACCAGAAATTCGCGTACAGCAGCCACTGCGAATCTTTAACACGTGGATGGGTGATCAAAGTAAGCTTCTGCTCCTGAAAGAAGTCATAAAAGTGATCCAAGAGGAAGGCCTACTTCAGAAAGTGCAAGAGGCTGGTCGAGTATTGCTCAGTGGATTGGAGAATGTTCAGGATAAGTATCCTGGCTTATTTTCCCGTGCACGAGGTGAAGGAACCTTCTGTGCGATTGACTGTTATGATTCAGACGTAAGGGCAGAGTTTCTAAGGAGAATGAGAGCCGAAGGTGTGGAATTAGGTGGATCAGGGACGCACAGCATCCGCTTCAGGCCTTCTCTTATATTTTCAGCACAACATGCAGATATTCTCTTTGAAATCACTGAGAAAGTAGCTTCCGAAATAGCTTCGCAAAAATGAAATACAGGAAATATTGAAAACTTTCTTACCAATAGGAAATATCGAAATGATAATTGCATTTTAGGTAGCAAAATCAAAATTATGATTCCATATGGAGTTATAGGATAATCTTTCAATCAATCAAACATTTATTATAGTAGTAACGTATTTGAATCTGTCGTTTAGCTAACGGGTGTCGAAAAGCGCCGGATACCCTCCCCGTTTAAGTACCCTTTCCAAACCAGAAGTAGGAATTTTTTTATACATTCAGTTCAAAAAGCCCCATCATAATGTGAATTTCTTAAATTTACGTAGCACTGATTTGCACGATGAATGAATGGAAGAAATCGCTTGAAAGGTTACGGACAGGCCAGCTGACCAAGACCATAGAGGCTATGTCGATGGACTTCTGATATTCGTTGCAAACAAGAGTGGGTTTTAATTTTTAGCCTTTTGGTTCCCCAGTTCATAATTTCTGTTGTTCTCTCGTCATTTGGTCTTCCGTGTTTTCTCGTCTTTACTTTACCTTAAGGCTGTCTTTACGTTTGACTTTCTGAGTTTCAATGAATAAATTTGATCAAGATAT

Protein

Uniprot

Uniprot term	Description
P80147	4-aminobutyrate aminotransferase, mitochondrial OS=Sus scrofa OX=9823 GN=ABAT PE=1 SV=2
Q9BGI0	4-aminobutyrate aminotransferase, mitochondrial OS=Bos taurus OX=9913 GN=ABAT PE=2 SV=1
P80404	4-aminobutyrate aminotransferase, mitochondrial OS=Homo sapiens OX=9606 GN=ABAT PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00202	Aminotran_3	Aminotransferase class-III	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015422	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR005814	Family	Aminotransferase class-III	Interproscan
IPR015424	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43206	AMINOTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003867	Molecular Function	obsolete 4-aminobutyrate transaminase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0009450	Biological Process	gamma-aminobutyric acid catabolic process	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0008483	Molecular Function	transaminase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05606	MCEE, epi; methylmalonyl-CoA/ethylmalonyl-CoA epimerase	EC:5.1.99.1	Valine, leucine and isoleucine degradation	ko00280	deepkoala