Gene detail

Detailed information of aawi_s0003.g172.t1 in Acropora awi

Genomic Location: sc0000003_pilon:2883739...2912077
NR annotation: XP_029209643.2, RNA polymerase-associated protein CTR9 homolog [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

aawi_s0003.g172.t1

ATGCAAGCAGAGAGCTGTTATCAGATGGCCAGAGCCTTTCATGTACAGGGTGACTGTGATCAAGCATTTCAGTATTATTATCAAGCAACTCAATTTGCTTCACCAAACTTTATTCTTCCTCACTTTGGACTTGGACAGATGTACATTGCAAGAGGAGACACCAACAATGCTGCACAATGCTTTGAGAAAGTTTTGAAAGCAACACCTGGAAATTATGAGACACTTAAAATCTTGGGGTCTCTGTACAGTACATCCACTGATCTGGAAAAGAGAGAAACAGCTAAGAATCATTTGAAGAAAGTCACAGAACAGTATCCTGATGATGTTGAAGCATGGATTGAGTTAGCAGGAATTTTAGAGCAGTCTGATGTTCAGGCTGCCCTTCAAGCCTATGGAACAGCATCCCGTCTTCTGAAAGAAAAAGTTAAGGCTGATGTTCCTCCAGAGATTCTAAACAATGTTGGAGCTTTGCACTTCAGACTGGGAAACCTAAATGAAGCAAAGAGGTTTTATGAATCATCTCTTGAGAGATGCAAACAGGAAAGTAATGCTGATGAGAGTTATTACAACGCAATATCCGTCACCACAACATATAATTTATCTCGTCTCCATGAATCTCTGTGTGAATTTGACAAAGCAGAGGCACTTTACAAGAACATACTGAGGGAACATCCAAACTATGTTGACTGTTACCTTAGACTTGGTTGCATGGCTCGTGACAGAGGACAAATTTATGAGGCTTCTGATTGGTTCAAGGAAGCTCTACAGATCAATCAGGATCATCCTGATGCCTGGTCCTTAATTGGCAATCTTCATTTGGCCAAGCAAGAGTGGGGGCCTGGACAAAAGAAGTTTGAGCGCATCTTGAAGCAACCATCGACAGCCAATGATGCATATTCTTTATTGGCTCTTGGAAATGTATGGCTTCAGACACTACACACTCCAACAAGGGATAAGGCAAAGGAGAAAAGACATCAGGACAGGGCTCTGGCCTTGTACAAGCAGGTTTTGAGAAATGACGCAAGAAATCTGTATGCAGCAAATGGAATTGGTTGTATTCTTGCACATAAGAACTTTCTTAGAGAGGCACGAGATGTGTTTTCTCAGGTTCGTGAAGCAACTGCTGATGTTCCAGATGTTTGGTTGAATCTAGCTCACATTTATGTGGAACAGAGGCAGTATGTGGCAGCTATTCAGATGTATGAGAATTGTTTGCGGAAGTTTTTCAAGCATCATAATGTGGAAGTGCTACTGTACCTTGCACGTGCCTACTTCAAAGCAGCAAAAATGAAGGAATGTAAACAAGTTTTGCTGAAAGCTCGACATATTGCACCGAATGACACCATTCTGCTGTTCAACATTTCTTTGGTTCAGCAGCGGCTGGCTACTGCCATTTTGAAAGCAGAGAAGAGTCCATTGAGGGTGGTTCTTGGGGCCGTTAGGGAACTGGAACAGGCACAACGGAATTTCAGCTGGCTTGCCCAAAATGGTGACCGCTTGAAATTTGACTTGAGCTGGGCAGCAGCAGAAGCTAGGCACACTGGTGATCTACTAAGTCAAGCACAGTATCATGTTTCTCGAGCTCGTAAGGTGGATGAAGAGGAACAAGCAGTTCGTCAGAAGCAGGAGGAGGAAAAGGAAGCTCTTCGgaagaagaaagaagaagaagagAAACTCAAAAGAGAACAAAGGGAACTCCAAGAGAAAGAACTTCAAGAGAAACGCCAACAGTTTAAGGAAGCTACTAAAAACCTTTTGGTTTTTGCACCTGAGGAACAAGCTCCAAAGGAGAAGGCATCGAAAGGAAAGAAAAAAAAGACAGCAGATGATTTTATTGCAAGTAATGATGAAGAAAGCCCTGAGGAAGAGGAAGAGGTTGATGCAGATGGAAACAAAGTGAAGAAGCCAAAAGTCAAGGCAGAGAAAAAACGGAGAAAGAAACGTCTCAGAGAAGAAGGTGATGAAAGTACACCAAAGAAAAAGAGAAGTCGAAAACAGAAGGGTGAACCAAAACAAGGAAAAAAGAAGAAATCTGGGGAAGAGAGACTAGGAGCAAAACAAAGAATGAAAGTAAAGTCCAAAGCATTTGTGTCATCCTCGGAGGATTCTTCAGATTCTGAGACTGAGAAGCTGAAGATTGCTGATATTGGAAGTGATGACAACTTGAGTGAAAAGGAAGGAGGTAAAAGTGGGGATGAAGAGAACAGTGATGCAGCCATGAGCAAAGAGCAGAACAGTGAAACAGAAGATCAAACTCAAAGTGGAAGGAAAAGAATACTGTCAAGtgatgaagatgatgattatgatgctgatgcaaaagatgaggaggatCAAATCGACAATGATCAGCAGCCAAGTAAAAAGAAAAGCAAGAAACTGCTAAGCTCGTCAGAATCTGAGAGTGATGACTAG

Transcript

aawi_s0003.g172.t1

TCTATACTTTCTGTCGTGAAAATGAATTTGGAAAGAAATTTCGAAGTAGATTAAAGAAGATTGATGCTATTAAGAATGGCGTTCAGTTGCTTTCACAAGCTTATGGACTTGATAATTCCAATCCTATGGTTCTTAATCATTTAGCAAACCATTTCTTCTTCAAGAAGGAATACAACAAAGTTCAGCACTTAGCTCTTCATGCTTTTCATGGCACCGAAGTTGAAGCCATGCAAGCAGAGAGCTGTTATCAGATGGCCAGAGCCTTTCATGTACAGGGTGACTGTGATCAAGCATTTCAGTATTATTATCAAGCAACTCAATTTGCTTCACCAAACTTTATTCTTCCTCACTTTGGACTTGGACAGATGTACATTGCAAGAGGAGACACCAACAATGCTGCACAATGCTTTGAGAAAGTTTTGAAAGCAACACCTGGAAATTATGAGACACTTAAAATCTTGGGGTCTCTGTACAGTACATCCACTGATCTGGAAAAGAGAGAAACAGCTAAGAATCATTTGAAGAAAGTCACAGAACAGTATCCTGATGATGTTGAAGCATGGATTGAGTTAGCAGGAATTTTAGAGCAGTCTGATGTTCAGGCTGCCCTTCAAGCCTATGGAACAGCATCCCGTCTTCTGAAAGAAAAAGTTAAGGCTGATGTTCCTCCAGAGATTCTAAACAATGTTGGAGCTTTGCACTTCAGACTGGGAAACCTAAATGAAGCAAAGAGGTTTTATGAATCATCTCTTGAGAGATGCAAACAGGAAAGTAATGCTGATGAGAGTTATTACAACGCAATATCCGTCACCACAACATATAATTTATCTCGTCTCCATGAATCTCTGTGTGAATTTGACAAAGCAGAGGCACTTTACAAGAACATACTGAGGGAACATCCAAACTATGTTGACTGTTACCTTAGACTTGGTTGCATGGCTCGTGACAGAGGACAAATTTATGAGGCTTCTGATTGGTTCAAGGAAGCTCTACAGATCAATCAGGATCATCCTGATGCCTGGTCCTTAATTGGCAATCTTCATTTGGCCAAGCAAGAGTGGGGGCCTGGACAAAAGAAGTTTGAGCGCATCTTGAAGCAACCATCGACAGCCAATGATGCATATTCTTTATTGGCTCTTGGAAATGTATGGCTTCAGACACTACACACTCCAACAAGGGATAAGGCAAAGGAGAAAAGACATCAGGACAGGGCTCTGGCCTTGTACAAGCAGGTTTTGAGAAATGACGCAAGAAATCTGTATGCAGCAAATGGAATTGGTTGTATTCTTGCACATAAGAACTTTCTTAGAGAGGCACGAGATGTGTTTTCTCAGGTTCGTGAAGCAACTGCTGATGTTCCAGATGTTTGGTTGAATCTAGCTCACATTTATGTGGAACAGAGGCAGTATGTGGCAGCTATTCAGATGTATGAGAATTGTTTGCGGAAGTTTTTCAAGCATCATAATGTGGAAGTGCTACTGTACCTTGCACGTGCCTACTTCAAAGCAGCAAAAATGAAGGAATGTAAACAAGTTTTGCTGAAAGCTCGACATATTGCACCGAATGACACCATTCTGCTGTTCAACATTTCTTTGGTTCAGCAGCGGCTGGCTACTGCCATTTTGAAAGCAGAGAAGAGTCCATTGAGGGTGGTTCTTGGGGCCGTTAGGGAACTGGAACAGGCACAACGGAATTTCAGCTGGCTTGCCCAAAATGGTGACCGCTTGAAATTTGACTTGAGCTGGGCAGCAGCAGAAGCTAGGCACACTGGTGATCTACTAAGTCAAGCACAGTATCATGTTTCTCGAGCTCGTAAGGTGGATGAAGAGGAACAAGCAGTTCGTCAGAAGCAGGAGGAGGAAAAGGAAGCTCTTCGgaagaagaaagaagaagaagagAAACTCAAAAGAGAACAAAGGGAACTCCAAGAGAAAGAACTTCAAGAGAAACGCCAACAGTTTAAGGAAGCTACTAAAAACCTTTTGGTTTTTGCACCTGAGGAACAAGCTCCAAAGGAGAAGGCATCGAAAGGAAAGAAAAAAAAGACAGCAGATGATTTTATTGCAAGTAATGATGAAGAAAGCCCTGAGGAAGAGGAAGAGGTTGATGCAGATGGAAACAAAGTGAAGAAGCCAAAAGTCAAGGCAGAGAAAAAACGGAGAAAGAAACGTCTCAGAGAAGAAGGTGATGAAAGTACACCAAAGAAAAAGAGAAGTCGAAAACAGAAGGGTGAACCAAAACAAGGAAAAAAGAAGAAATCTGGGGAAGAGAGACTAGGAGCAAAACAAAGAATGAAAGTAAAGTCCAAAGCATTTGTGTCATCCTCGGAGGATTCTTCAGATTCTGAGACTGAGAAGCTGAAGATTGCTGATATTGGAAGTGATGACAACTTGAGTGAAAAGGAAGGAGGTAAAAGTGGGGATGAAGAGAACAGTGATGCAGCCATGAGCAAAGAGCAGAACAGTGAAACAGAAGATCAAACTCAAAGTGGAAGGAAAAGAATACTGTCAAGtgatgaagatgatgattatgatgctgatgcaaaagatgaggaggatCAAATCGACAATGATCAGCAGCCAAGTAAAAAGAAAAGCAAGAAACTGCTAAGCTCGTCAGAATCTGAGAGTGATGACTAGGATCTAGCAGCTTTGTGATGCTATCATGATGTCAAAAAACAATGGTGCAACTGAAGCTTTACATTTGGTTCACAAGAAAACTGCTATGTGTTTGAAACTGGGAGAGGTTGGCTGTCAAAGAGCAAAAGCTAGCTACCTTAGCTTGTGTATTTGCTACAAAAAAATGTAGACTATAAGGAAAACAATTGTTCCAGAGTAGTTGGTTTGTAGTCTGGATCTGCACTTATGCCCATTTGCAAATGGTACTTTCTCTTCAGAGTAAATTttacttttaattattatttgttattgactgttatatgccattttttttttTCATGTACAACTTAACCCTGCTACAGTGTTTATTCAAAGCATCCTCTTGAAATATTTCCTGTTGTATAAAAATGATCAAACCAAATTCAGGACTTTCTTCAACCTGATCATTGTAGACTCAAACATTGATACTTCCAGAGCCACCTTCAGATTGTGGGGATGGAAACTCTTCAATCAATGAAGCAAAATAAAGCCTCTGAAAAAAGCTTTCATGCCATTTGCAATCTCGTTAGTGTTGGTCCACTTATTTAAAAGTTAATGATAAGAAGAATTGGGCCGCTGGTACATAACTCTTTCAAAATGGTAGTGTATTAAAATAGTGTCATTTGTTTTCAAGGTATTTTAACTCTTCTTGTTCTGATACAATAGGAAAAATGGAAAGAAAATGTCTATttaagg

Protein

Uniprot

Uniprot term	Description
Q6PD62	RNA polymerase-associated protein CTR9 homolog OS=Homo sapiens OX=9606 GN=CTR9 PE=1 SV=1
Q62018	RNA polymerase-associated protein CTR9 homolog OS=Mus musculus OX=10090 GN=Ctr9 PE=1 SV=2
Q6DEU9	RNA polymerase-associated protein CTR9 homolog OS=Xenopus tropicalis OX=8364 GN=ctr9 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13374	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan
PF14559	TPR_19	Tetratricopeptide repeat	Repeat	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR031101	Family	RNA polymerase-associated protein Ctr9	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14027	RNA POLYMERASE-ASSOCIATED PROTEIN CTR9	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000993	Molecular Function	RNA polymerase II complex binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006368	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0016593	Cellular Component	Cdc73/Paf1 complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15176	CTR9; RNA polymerase-associated protein CTR9	-	Transcription machinery	ko03021	deepkoala