Gene detail

Detailed information of aawi_s0003.g196.t1 in Acropora awi

Genomic Location: sc0000003_pilon:3376415...3387569
NR annotation: XP_029210705.2, bromodomain adjacent to zinc finger domain protein 1A-like [Acropora millepora]
Species Acropora awi · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

aawi_s0003.g196.t1

GGAACAAGCTTGTATAATCAGATCATAAAGAAATGCAGCCATCATCAAGAAATATGCTTATTCCTGAGTGTAGTGAGTATTGTGATGGTAATGCAGCTGAGTTCTTTTGTCCAGAATGTTCTGCCATGTTCTGTGGCAGTTGTTATGATAAAGAACACCTTGGAAATGAACGGAAATCTCAGCATGGAAAGCTGACGGAGTTGCATGCCATATGTAGTGCTCATAAGCATACTCTGGATTATTTTAACCTCACAATACTTCAGCCAATGTGTGTCATTTGCAGAAAGGAAAATATGCAAGCTGCTGAGTCTCAGCACCATGTTGTTGAAAATATAGATAATATTGTTCCAAAGCTGCGATCGCTCATTGAGAAGAAGCTGAACAGTGCATCTGAACTGATCAGCAAGTTAAATAGCGAAATCACCAAAGCAGAAAACACTGCGAAAAGTACAGCAAATTCTGTAGTGGATTACATAAAGTGTGCTTTTGTGAAACTTAGAAGATATTTAGAAGAATCTGAGACAGAACTTGTAGAGGGTGCTAGATGTTATTTTGATGAATTTTGGGAGGTCAATGAAGAAAACCTGGGAGTAAAGAATGCTGTGCAAAGTCTTGAAGCTATTTCTGAGGAAGGCAAGTTGCTTCTGTCAAAAGATGCCAGACACATGGCCGTCGAATTCCCATCAATCTACTCAAGACTTGAAGAAATGTGCAATGCTAATGAGAGAATGCAAGACTTAAACTTTGTGGTTGTGAGGCTCGAGGAAAAGATTTCCAAGAAATTAAAGGCAGTTATTGAAACTACAACACAGTCAACAATGGAAATTGGAGATTGTGTCACATCCAGTGATTTAGCGGAGACTCAATTTGACACAAACAATAATGAGGTTGGATCACCGCCCAGAGTTTACAGACCAGGAAGAAAGAGGTCCCACGAAAATGCAGTTGCGTCTTATGATGAACCCAATGCTAAGAAGCAGAACAACAGTGATTGTTCTCGTCAGATCACTGCGGGCTTCTCCAATAATTCAGCAACAGCATCAGCCAAACTAAAAAGCGTTAGGGAGTTATCGTCTCCAAGCAAAGTACGCAAGCGAACCTGCAAGGCTGGGAAGCCGCCAAAAAGCCCAGCAAGGTGCTCTTTGCCAAGGTCTAACCAGGCATGGCCATCACCCGGGGAAAACGTTCATCGTACAAGACGAGGAGGAGAATTGTCCAAAGAATTTCAAAAATGTGATACAATTCTGACTGAGTTATGGTCCCAAGATGATAGCTACCCGTTTGTCCGTCCTGTGGATAAGAGACAGTCACCAGATTACTATACAATCATCAAGAATCCCATGGACTTGTCTGCTATCAAGGAGAAGCTTCACTCGCTACAATACAAATCTTCCGTGGATTTCGTCAAAGACTTTCGTCTTATGATCAGCAATTGCAGGGCATACAATCAGCCCGACACGTACGTCTACTCTGCAGGAGAAAGCCTGGATTGTATCTTCAACAACTTACTGAAGCAACATTTGCCAAATTTTGAAGATGTTTTATTACGCGACTCGATGGAAGACTGACAACACTAATGGAGGCAGACTTGCACATTAAGATGCCATATATTTTTAAACTGAAAATCCCAAACACGTAGGGAAAACAATTCAAAAACGATTTTTTTCTGTATTTTAATCGTCTTTTAATATGGCAGAACGGCAATTAACCTTCTTTTACCCATGGATTTAAAACAAATCAGATGTTTTCAGGTGAAGGCAATGCATATATATAAGAGGCTGAACTTTGTCCTTTGTAATAGCAGTACGTGTTGGTGTTTTTCTGTTACATGGAAAAACACATCCTGGTGCTTCAATAAATGAACCGCTGGGTCTTTCTACCCACTGGGTCTAAATTAGGGTTTATACCAGAAGCCTTCAAGTGCAGTTACTCTCGGCAATAATAATGGCCGCGTGCGGGAAGTCTCATGAACCGGCTCTACTATTTTTTGAGAGTTCGTAACGCATTTCTCACTCCTTTGAAAGTAGAGATATTCACCTTTAATCGTTTATCATCTAACACTGTTAAAATCTTATCAGCGAAATTTAAAAGTACAATAAGGGATATGTTTTTAATGAAACTAGATTTGTTCAGGAAAAACTACCAGACTAATGGTATTTGTGCTCACGAAAGAAAACAAGGCTTACAAATTGCGATGGGTTCTGATAGTCTTTCTTTAATGGTAAGTTCCTATTGAATCCTGTGTAGCCGTGTCAGAACATTGCCTCTCATTAAAGACTGGGGCTACCTACAGTTCATCACGACCTTCCCATTGCTCCGATGAGTTTATGACGTCACTTGGATGGTGGCGATCGGACTTTCACTCACAAAGACAAATCTCAGTGAAGGATTCACAATTTATGaaaaagaacaaaaaaaaaaaaacaaCGTAAACCCAGTCGTTTTAGCCGTCCACATGACGTCATACGACAAAATCACAAATAAAGCGACCCGCATATAAATATCAATTACAAGTCTTTAAATCAGCCTCGCATTTGACGTGACTATAATGAGGCTAAACTTCGATTTTTCAACATGTTCATGTTTTTTCGGAAAGCACTTTTTCTCAATAACTTCTATCTCTAACTTATCAAATTTTACATCCAATAACTTGCCGTGTTACATGAAAGACGGATTTTCAATTTAAAGATGTAAACGAACAACCCTTGAGTACGCGGATGATTAACAAACGTTACAGACTTGCCTGGCAAGTGTTGTTTTGGGTAGGGAGGGTAAAACATACTGCCTCTGCTTACACTCCCTCCGTTAAAAGAAACCCTCTCTTCCAGTAAAATTCTCTTTGCAAGCCAGAATGTAACACGAAATATATTTTCAATTTTTGATTAATTCCTTCATTTGATACATCTAAATTTCTGAATTCATATCACTTTCATTAAACCTCAATTTAAGTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q58F21	Bromodomain testis-specific protein OS=Homo sapiens OX=9606 GN=BRDT PE=1 SV=4
Q4R8Y1	Bromodomain testis-specific protein OS=Macaca fascicularis OX=9541 GN=BRDT PE=2 SV=3
Q6FTW5	Histone acetyltransferase GCN5 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=GCN5 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008019 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00439 all species →	Bromodomain	Bromodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR018359 all species →	Conserved_site	Bromodomain, conserved site	Interproscan
IPR001487 all species →	Domain	Bromodomain	Interproscan
IPR037800 all species →	Family	Histone acetyltransferase GCN5	Interproscan
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45750 all species →	GH11602P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000123 all species →	Cellular Component	histone acetyltransferase complex	Interproscan
GO:0004402 all species →	Molecular Function	histone acetyltransferase activity	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0010484 all species →	Molecular Function	histone H3 acetyltransferase activity	Interproscan
GO:0043966 all species →	Biological Process	obsolete histone H3 acetylation	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0140672 all species →	Cellular Component	ATAC complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for aawi_s0003.g196.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora awi tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora awi, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →