Gene detail

Detailed information of aawi_s0006.g95.t2 in Acropora awi

Genomic Location: sc0000006_pilon:1281963...1300796
NR annotation: XP_029189484.2, LOW QUALITY PROTEIN: trichohyalin-like [Acropora millepora]
Species abbreviation AAWI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

aawi_s0006.g95.t2

ATGGAATTAAAGTGGGAAATTTCTGATGAAGAGAGAACGCGCCATGATGCTTTATTCTACAGCCAAAATCCTCAAGGCAGATATTTATCTGGTGAGCAGGCACGTTCGTTATTTATTAGATCCAAACTCCCTTTGCCGGAGCTTAGCAAAATCTGGAAACTTGCAGACATTTCAAGAAACAACATGCTGGACATTGATGAATTTGCAGTTGCAATGCATCTCATCCAGAGTCGTTTAAAGGGCAAAAACATTCCTGAGAAATTACCAGAAACACTCACTCCTGTTAATTCACCAACTGTTGATGTTCCTGCCATGTTGCAAGAAGAGAGGGAGGCTTATGGGAGAGCTTTCTTATGGAAAAGTGACTCCAAGATGGGATGTGTAGATGGTCAAACAGCATGTTACATCCTCGTTGGATCTGGTCTTTCAGAGAATATACTAGCAAGAATTTGGAACATGTCTGACATTGACCGAGATGGCAAACTCTCTCAAGATGAATTTTTTGTGGCCCTTCATCTGACAAGATTTTGTAAGCAAGGAAACTCAATAGAAGGGTCTGTGAATGTGAGAACGATTCTATTACAACAGATTAAAGAGGATTGCTATGATACAAAGAAGCTCAGACTAGCAGAGGTTCAGACAGAAAAGCGAAAACTCCTCTCTCTAAAAGAGAAGCTTTGCCATGAAATAGCTGGTGGCTTAGATGAAGAATTAATGGCGCAAAAAGTCCAAGACGAATTAGACCAAGTCAATAGACAAATATATCTTTTAGAGAAAGACGAAACTGAACTGCGACGGGCCCTGCAACAATTGAAGGACAAGTCAAAGAGAGAAAGCTTCAAACCATTCGATCGCAGTTTCCTGTTAAAGCGACATCCGAGTGGCGGAGATATCTTCCGAGGCGCAAGTCGATCATACGAGGAAACAATTTCGGACCACCGGGACGTTGAAATACAGAAGTTATGGAAGGAAGATGGTGATATAAGCGACTTCGGGACGGCAATATCAGAAGATCTTAAAGCGCCAGATGAATCAGAGAATAACGACGAAGACCAGTCGGTTAGAGCACTCGTCAGTTCAATCAGTGAAGCTCAAGAGTTGTCAAACACAGTAGCGATGTCATCAACTGTTTCTTTAGACATAAACGGCAATAGCGATGAGACCAAACCAAGGATGTCGAGTTCTGTTGACAAGCAAGAAAATAACCACGATGGCAGTTTCGACCAGTATCGAAGAAGAGCAACGGATGAACAGCACGAATCACAGATTAGCGACGATGACGACAAGCAAAACAAGAGCTACCATTTGATGAATGGCTCTTCACAGAACAGCTCAACTCTTGTAATGTCCGATACAGAAGATTCGCTGATCAATCTGACTACGAGTGTTGACTCACAGAAATCATTACATAGTTCGTACCAAGTGGAAAATGACGTCGCATTCGAACATTCCCCCATTGTTAGTCCAGTGGAAGGGTCTGTAGAAGTTAACACAGCGACAACTGTGCAGTCGTCTGCGTTTGCTTCATTGGACAGTTTATCTGTTAATCTGGGAGATGGCGAAGAATCATTTCAAGGCAAAAGGAGAGAGACTCAACCGCCCTTATCACCAAGAAGTGTGACGCAAGGAAACCTTACTCCAATTATTTTGGAAGGAAAGAAGCAAAAAGATGAGGAGAGAGCAAAACACAAGGAATGGAACGAAGAATTGCGACGTAAAGCTCGCGAAGAGTTGCACAAACTTGATGAGGAGACAATCAGAAACGCGGAACAGAGGAAAGTGGTGTTTGAGGAGGAGAAAAGAAAACTCGAACATCAAACCTCTGTGGCGCAAGAGGAACGGGGGACAAAAAAAGAACCATTAACAAAAATAGAAGCTGGGAAGATTCTTGAACAGGAAGTAGAGGAACAAAGATTACGGGAGGCGTTGACACGCATCGAACTTGAAAACATCAAAGAAAGGGAAAGAATTGAACAAGAGAAACAGAAATTTAAGTTGGCGAAAAAGGAGGAACATCCTTCTGCTTTTCAGGGCACGGATTTGATCCAAACGTCAATTATTGATGAGAAAGGGGAATGTGTTGAAAATGGTAATAACCAAGGTGTTCGTATTTCGAGTAAACGAGGCAGTATTGTTGATTTGATCGAGGGTGATGTTAAGTTTGAGCCGATAAAACAACCCGTGGAGAATCGCCCAATTCTGGAGCCCGTGAAGTCTTCGTCTTACCCTCAAACTCAGTCGCAACAACAGCCTCTCACATCACAGCATCACCAGCCAGTAATGCGACGAACGAAGGATACAGGGAAACACGCGCCAAATAGGAACGCCGAAAATAGAAAAAGTATCATCGAGTTGGAAATTGAACGACAACGAGAAAGGGAGGAAGAGATGAGAAGGGAAGCGGAAGTGGCTCGTCGATTTCACGCTAAACAACAAGGGGACGACAAATTTCTTGATAAAAACGCCGAAGAGACAAAACCGAAGGAAAAGAAGAGTTCGGTTTCGAAGCCCCCAAGCGTGCAACGAAAAACTGAAAAGTTTGAAAAGAAATGTGAAGAATTGAAAGCGAAGGAATATCTTCCGAAACAAGCTTTAGAAAAGAGTACCCCGGCTGCTAAACCTAAGTCAATACAACAGCCACTGATTGAGGACGATACTGTCATACAGTCAAAGAAGGTCGATGTGATGCAGCGACGAAACGAGGATGATTGTGCTGAGAGTTCTTTGGAAAGCGGTGAAACAGAAGCCCAGAGGAAACGAAGAGAGGAAAAGGAACTTTTCAAACAAATGCAAGAGGAAGAACGACAAAGGCAAGAGGCGCAGAGACAAGATCTTGAAAGAATCAGAAAAGAAGTTGATCGGAGGGAAGCGGAAGAGATGGTGCGTgcaaagcaagccaaggaagaagagaaagcaaagcaaagAGAATTTGAGATTAGAATGCTGGAAGAGCGACAAAAAGAAAGCCTACAGAATGAGGAAAAAAGTAAACAGGATACTATATCCAGGAAAACGACCTTTGCAGCGCACAAGCTGATTTTAGAACAACGCGTTTTGAAGGCGTTGGAAGAAAGCAAACAGGAGAGTTCTCTTTCAAATCGGCGCGCGTCGAGTTTTGAACCTTCAACCGATTTTTCCTCGCTATGTGACACTGTTAATGAAGACTTTACTAGCGGAGGAGTGAAATTAAGAAAGGCCAGTTTCGAAAAAAATGAAGCTAGAAAGGATTCAACAGAAGACATGCGAAAAAAGCGGTTTTCGTTTAATCTTGACGGTGTCCACAGTGGAATGAACTTAACTGAGCATGCTCCCTCACGAGTTGTTCAGTCAGGTTCTATGAAAGAGGGCATGGCCCATGCTGCTGAAGACATTAAGAAATCACAGGCTCAAGATAGGAAGGGTCGAAAGGAAAATTCAAATACAGGCAAACTCCTTAAAGCGAAAAGCTTATGTGATTTGTCTATGAAAAAAGACGGGAAAAAGGACGATCTGAATTCTCACCTGATGCTAAATAAACCCTTATCCAATCGTGCCGCTGATTCGGTGGATGGCGGCTTCCCGTCATTTTCGGATTCGAGAATTCAAAGAGAACTTGAGGAACAACGCATGCGTGAAGCTATCGTGAAGCAGGAGAGCAAAGAAAGAGAGCGGTGGTATCGACAGGAAGAGGAAAAAAAGACGACTTCGGAACCTCCCGTGACGGGCAAGAAGGAAGTGAGCTTGCGTGACATCAAAAGAAACCCGTTGCCCAATAAAATTCAGGTAAAAAAGCCATCAACAAATCGAGAGTCAGTCACTCAATCCATGGCCGCTCAATGGGAAACAAAGTTGCAGTCTATCCCTGATGGAAGTGACACAAAGGACAAAGCAGATCATCAAAGGAAAAAAAGTGTGGTTGAGATAGAGAGAGAGGAAGAAAGGCGAAGAGAAGAAGAACTTCAGAAGGAGAGAGAAAGGCTATTTTTGGAACGTAAGCAAAAAGAAGAAGAGAACAGGCTTTTGTTACAGAAAAAACTTGAACAAGAAAACGAAAAAAAGAGAAAAGAAAGAGAGGAAAAGGAAAAGCGTCAGCAACGTACCACAGCCATGAAATCGTTATTCGAGAAAATGGGAGGAAAGCAATAA

Transcript

aawi_s0006.g95.t2

ACAGGACACAGCGTCTTTGACAAGCTCGAGTGCGAAGGGCTAGTACGGTAGTAAACACAAATTTCAAGAACAATTCGGCGATATTAGTCGGCCATAAACAAATGGGATATTAATACAGATATGGGTTGACCCACGTAATGAGGGGCTTTTCCAAGTTTACGGCAGGTCACTCCTTCGATTTAAGATGGAATTAAAGTGGGAAATTTCTGATGAAGAGAGAACGCGCCATGATGCTTTATTCTACAGCCAAAATCCTCAAGGCAGATATTTATCTGGTGAGCAGGCACGTTCGTTATTTATTAGATCCAAACTCCCTTTGCCGGAGCTTAGCAAAATCTGGAAACTTGCAGACATTTCAAGAAACAACATGCTGGACATTGATGAATTTGCAGTTGCAATGCATCTCATCCAGAGTCGTTTAAAGGGCAAAAACATTCCTGAGAAATTACCAGAAACACTCACTCCTGTTAATTCACCAACTGTTGATGTTCCTGCCATGTTGCAAGAAGAGAGGGAGGCTTATGGGAGAGCTTTCTTATGGAAAAGTGACTCCAAGATGGGATGTGTAGATGGTCAAACAGCATGTTACATCCTCGTTGGATCTGGTCTTTCAGAGAATATACTAGCAAGAATTTGGAACATGTCTGACATTGACCGAGATGGCAAACTCTCTCAAGATGAATTTTTTGTGGCCCTTCATCTGACAAGATTTTGTAAGCAAGGAAACTCAATAGAAGGGTCTGTGAATGTGAGAACGATTCTATTACAACAGATTAAAGAGGATTGCTATGATACAAAGAAGCTCAGACTAGCAGAGGTTCAGACAGAAAAGCGAAAACTCCTCTCTCTAAAAGAGAAGCTTTGCCATGAAATAGCTGGTGGCTTAGATGAAGAATTAATGGCGCAAAAAGTCCAAGACGAATTAGACCAAGTCAATAGACAAATATATCTTTTAGAGAAAGACGAAACTGAACTGCGACGGGCCCTGCAACAATTGAAGGACAAGTCAAAGAGAGAAAGCTTCAAACCATTCGATCGCAGTTTCCTGTTAAAGCGACATCCGAGTGGCGGAGATATCTTCCGAGGCGCAAGTCGATCATACGAGGAAACAATTTCGGACCACCGGGACGTTGAAATACAGAAGTTATGGAAGGAAGATGGTGATATAAGCGACTTCGGGACGGCAATATCAGAAGATCTTAAAGCGCCAGATGAATCAGAGAATAACGACGAAGACCAGTCGGTTAGAGCACTCGTCAGTTCAATCAGTGAAGCTCAAGAGTTGTCAAACACAGTAGCGATGTCATCAACTGTTTCTTTAGACATAAACGGCAATAGCGATGAGACCAAACCAAGGATGTCGAGTTCTGTTGACAAGCAAGAAAATAACCACGATGGCAGTTTCGACCAGTATCGAAGAAGAGCAACGGATGAACAGCACGAATCACAGATTAGCGACGATGACGACAAGCAAAACAAGAGCTACCATTTGATGAATGGCTCTTCACAGAACAGCTCAACTCTTGTAATGTCCGATACAGAAGATTCGCTGATCAATCTGACTACGAGTGTTGACTCACAGAAATCATTACATAGTTCGTACCAAGTGGAAAATGACGTCGCATTCGAACATTCCCCCATTGTTAGTCCAGTGGAAGGGTCTGTAGAAGTTAACACAGCGACAACTGTGCAGTCGTCTGCGTTTGCTTCATTGGACAGTTTATCTGTTAATCTGGGAGATGGCGAAGAATCATTTCAAGGCAAAAGGAGAGAGACTCAACCGCCCTTATCACCAAGAAGTGTGACGCAAGGAAACCTTACTCCAATTATTTTGGAAGGAAAGAAGCAAAAAGATGAGGAGAGAGCAAAACACAAGGAATGGAACGAAGAATTGCGACGTAAAGCTCGCGAAGAGTTGCACAAACTTGATGAGGAGACAATCAGAAACGCGGAACAGAGGAAAGTGGTGTTTGAGGAGGAGAAAAGAAAACTCGAACATCAAACCTCTGTGGCGCAAGAGGAACGGGGGACAAAAAAAGAACCATTAACAAAAATAGAAGCTGGGAAGATTCTTGAACAGGAAGTAGAGGAACAAAGATTACGGGAGGCGTTGACACGCATCGAACTTGAAAACATCAAAGAAAGGGAAAGAATTGAACAAGAGAAACAGAAATTTAAGTTGGCGAAAAAGGAGGAACATCCTTCTGCTTTTCAGGGCACGGATTTGATCCAAACGTCAATTATTGATGAGAAAGGGGAATGTGTTGAAAATGGTAATAACCAAGGTGTTCGTATTTCGAGTAAACGAGGCAGTATTGTTGATTTGATCGAGGGTGATGTTAAGTTTGAGCCGATAAAACAACCCGTGGAGAATCGCCCAATTCTGGAGCCCGTGAAGTCTTCGTCTTACCCTCAAACTCAGTCGCAACAACAGCCTCTCACATCACAGCATCACCAGCCAGTAATGCGACGAACGAAGGATACAGGGAAACACGCGCCAAATAGGAACGCCGAAAATAGAAAAAGTATCATCGAGTTGGAAATTGAACGACAACGAGAAAGGGAGGAAGAGATGAGAAGGGAAGCGGAAGTGGCTCGTCGATTTCACGCTAAACAACAAGGGGACGACAAATTTCTTGATAAAAACGCCGAAGAGACAAAACCGAAGGAAAAGAAGAGTTCGGTTTCGAAGCCCCCAAGCGTGCAACGAAAAACTGAAAAGTTTGAAAAGAAATGTGAAGAATTGAAAGCGAAGGAATATCTTCCGAAACAAGCTTTAGAAAAGAGTACCCCGGCTGCTAAACCTAAGTCAATACAACAGCCACTGATTGAGGACGATACTGTCATACAGTCAAAGAAGGTCGATGTGATGCAGCGACGAAACGAGGATGATTGTGCTGAGAGTTCTTTGGAAAGCGGTGAAACAGAAGCCCAGAGGAAACGAAGAGAGGAAAAGGAACTTTTCAAACAAATGCAAGAGGAAGAACGACAAAGGCAAGAGGCGCAGAGACAAGATCTTGAAAGAATCAGAAAAGAAGTTGATCGGAGGGAAGCGGAAGAGATGGTGCGTgcaaagcaagccaaggaagaagagaaagcaaagcaaagAGAATTTGAGATTAGAATGCTGGAAGAGCGACAAAAAGAAAGCCTACAGAATGAGGAAAAAAGTAAACAGGATACTATATCCAGGAAAACGACCTTTGCAGCGCACAAGCTGATTTTAGAACAACGCGTTTTGAAGGCGTTGGAAGAAAGCAAACAGGAGAGTTCTCTTTCAAATCGGCGCGCGTCGAGTTTTGAACCTTCAACCGATTTTTCCTCGCTATGTGACACTGTTAATGAAGACTTTACTAGCGGAGGAGTGAAATTAAGAAAGGCCAGTTTCGAAAAAAATGAAGCTAGAAAGGATTCAACAGAAGACATGCGAAAAAAGCGGTTTTCGTTTAATCTTGACGGTGTCCACAGTGGAATGAACTTAACTGAGCATGCTCCCTCACGAGTTGTTCAGTCAGGTTCTATGAAAGAGGGCATGGCCCATGCTGCTGAAGACATTAAGAAATCACAGGCTCAAGATAGGAAGGGTCGAAAGGAAAATTCAAATACAGGCAAACTCCTTAAAGCGAAAAGCTTATGTGATTTGTCTATGAAAAAAGACGGGAAAAAGGACGATCTGAATTCTCACCTGATGCTAAATAAACCCTTATCCAATCGTGCCGCTGATTCGGTGGATGGCGGCTTCCCGTCATTTTCGGATTCGAGAATTCAAAGAGAACTTGAGGAACAACGCATGCGTGAAGCTATCGTGAAGCAGGAGAGCAAAGAAAGAGAGCGGTGGTATCGACAGGAAGAGGAAAAAAAGACGACTTCGGAACCTCCCGTGACGGGCAAGAAGGAAGTGAGCTTGCGTGACATCAAAAGAAACCCGTTGCCCAATAAAATTCAGGTAAAAAAGCCATCAACAAATCGAGAGTCAGTCACTCAATCCATGGCCGCTCAATGGGAAACAAAGTTGCAGTCTATCCCTGATGGAAGTGACACAAAGGACAAAGCAGATCATCAAAGGAAAAAAAGTGTGGTTGAGATAGAGAGAGAGGAAGAAAGGCGAAGAGAAGAAGAACTTCAGAAGGAGAGAGAAAGGCTATTTTTGGAACGTAAGCAAAAAGAAGAAGAGAACAGGCTTTTGTTACAGAAAAAACTTGAACAAGAAAACGAAAAAAAGAGAAAAGAAAGAGAGGAAAAGGAAAAGCGTCAGCAACGTACCACAGCCATGAAATCGTTATTCGAGAAAATGGGAGGAAAGCAATAAAAGTGAATTGCATCCACCATTGTGGCGTTTTGCGGCATCAAGTAGTTCGAGGTTCACAATAAGTTCCAATGTTAATCAGCTTTACACCGCAGCCAGATATCACTATGGATTCATCAGTGTGTACATTTGACATATTTGAATAATTTTTTGCGTGCTTCAGCTTTTACGTGCTTTGAGTAAATTATATTAAAAATacgaaaatttgatattccatgggttggtaagggtcaaattaccatcggagaaagattacgaagctgaggtttcgagcgttggcccttcgtcgtcacttgccgattagattgcgaagatgacgtcttaagcgttagcccttggtcgtcactttccgattagattacgaagatggcgttttaagcgttagcccttcgtcaaagcgaagaggaaagggcttcactctcacaaagggcaaacgatcttttttacggtggtaatttggtcccttaactcgttggctaccaaattttcgccaccgacgcggcaccacggtttcctgatgaacttaacttttcatACTCGGCTTTAGAAGTCATTATCGACTAGGGGCTGTACGGGATTAACATACAATGCTGTTTCGGGATGTAGCGCACTCTACAATAAACTGTGTGTACCTAAATAAAGTGGTCGACGGAAGTCGAAGGTGACCCCAATGCAGCTTTTCCTTTTATCTGCTACAACAGGGGTACGGAAGGGAACCACTCATTTCCCAAAGGGATCATCCTCGTTCTATCGACCTCAGAAGGATGGAAAGATAACCCAACCCTTAGTGGTCTGGAGGGGATTTTGAAGAAGGGGTGAATATTATTAAAATAAGCAGCCTTTCTCCGCGTTTGTAAAAGACCACTTAAAAACTGTATCACTTTACAAAAATTATTTTAAACAATTATAACGTAGCGTATCGCAGTAATGTTtgtgtgagtgaatgcgtgagtgtgggtgcatgcatgggcgtgcttgcgtgtgtgtgtccgtTGTGATGTAATGAGTCGCGTGCTTCACTGATATTTGTAAGATATACATCAAGTAGTCGGAACAAGATCACGCGTTTGGTGTTATGAGTAGTCACTCTTGTTTATCAAAAAACTGTAGCCTAGCAATCATTTGATTTTTCTTTAACTCGAGCATTGCaataaatacagccattagag

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UBC2	Epidermal growth factor receptor substrate 15-like 1 OS=Homo sapiens OX=9606 GN=EPS15L1 PE=1 SV=1
Q60902	Epidermal growth factor receptor substrate 15-like 1 OS=Mus musculus OX=10090 GN=Eps15l1 PE=1 SV=3
A6S9N4	Actin cytoskeleton-regulatory complex protein pan1 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 GN=pan1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005926 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12763 all species →	EF-hand_4	Cytoskeletal-regulatory complex EF hand	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000261 all species →	Domain	EH domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11216 all species →	EH DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0016197 all species →	Biological Process	endosomal transport	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for aawi_s0006.g95.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.