Gene detail

Detailed information of aawi_s0011.g138.t4 in Acropora awi

Genomic Location: sc0000011_pilon:2608073...2634087
NR annotation: XP_044181974.1, LOW QUALITY PROTEIN: kinesin-like protein KIF13B [Acropora millepora]
Species Acropora awi · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

aawi_s0011.g138.t4

ATGTACGAAGAAAAGATCGAGGAGTTGAAGAATCAGATGGGGCCACCCCTAAACATGGAACGGGCGACAAGTATTGGTTCGTTCAGTTCGGGATACGGGTCGTCTCGGGTATCGTGGatggaggaaagCAGGGAAAATTTGATCCAATTGGAACAAAAACCATTGGTGCTCAGAGAGGAGGTCATCAGAGCTAACGCGCTTGTGAGAGAAGCGAACCAGTTGAGTGACGAAATGGGAAAGGAGACCGAGTTTGCAGTCACTTTGCAAATTCCGACGTCAAGTCTAAGCTTTGGGCGAAGTAGATCCGGCTTCAGTAGTGAAGTGGCGATAGTAGTCAAGCACAAATCAAAAGGAACACAAATTTGGTCGTTGGACAAATTGAGCAATAAAATCTACGACATGAGGGACTTGTACAACCAGTGTGTGGAGGAAGATATTCCATTTTCTGAAACGGATGAGAACTTAGATCTTTTCTTTGAAGTGGAGTGTCACACACTGATTGGAGTTGCGAACGTGTTCCTTGAGTGTTTGTTACATGACGTGAATCATGAATATGCAGCACCGATTATTAGCCAACAAGGAGAGGTTTGTGGCAGGTTAAAAGTAGAAGTTTCTAGAATATCAGAACGGACACAGAGAATGTTGCGGAAACAAACCCAaggcgaggacgatgacgaagatgaagacgaaggaGCAGGCGGAGAAGAGGACGAATTATTAGATGTACATGACGACGATGATACGGAAGATGAGGAAGAACTTGCCAAGGGCTCCAAAATGCACGTCGAAGTCAAAGTCGTTGAAGCGTACGATCTTCCTCCAGCACTCTGCAACTACGTGTTCTGTCAGTACAAATTTTGGAACGACGACAATACCATTGTCGTCCCGCCCATCAACGCCAGCATCTCCAACCCTGGACCGAAGACAAACACGATGATTTTCGAGCACACGCAGTGGCTCGAAGACATACTTACAGCTCTCGCCATGTTTTTGTTTGCGTCTGTTGATGTTTTTTTTTGTTCTGCTTTGCACAGCATGCGTGAAAAATGGTCAACGTCTCTGATGAAACGGCGTGAATATCTAGATGAGCAGATTCATTCTTTGATTGACAAACCAGACAAATCATCAAGCGACAAAGAGCGAGAGAGTTGGATGATTGACCAATGGGTTTGCCTAACTGAGGAGAGAAACGCTGTCTTAGTTCCCACACGCGGGAGTGGTATCCCTGGTGCACCTCCACTTGAAGGGACCATTCCTCTTGGAATGGAAAAGTTTAATCCGGTGATATTTCTGGATTTACAAAATGATGAGGTTAGGAGTGGCTGCATGGAGGAAGCTGGTCCCGCGGGTGTGGACTCTAACCTTTTGTTCGAGAATTCAGATAATATGATGGAGCTGCCAGTCATAAAATATGACCAAAAACAGGTTTCTGCCACTGTGTTGTGGGACTCGTCCATTCATGATTCTGTGTTCCTCAATCGCGTCACGCAATCGCACGAGCGAGTTTACCTCATTTTGAAGATCATTGTTCGCCTGGCTAGTCCCATTTCCATGGATTTAGTTCTCAGAAAACGGATATCGGTTAAAATCTATAAGAAGCAAAGTTGGAAAGACAGCTTGTTGAGAAGACTTGCAAAGTCAAGTGACCTTTCATTTGGGTTTGTCGGAAGCAGCCGTTTGGATTCTCCGGAGAACAATAAGCTGTGGAGAAATAGAGGGAGCAATCAAAGCGAATTTGCGTTGTCGGGTAGCTTCACCGACCCGAGGCCCGTGGCCAGGCCAAGTAAAGACGACATGGTAAACGATCTATTGCAACTCAACGAACAGTTCAGCTCATCGCCTAAAAACACTTCGGGTGTCGTTCTTCGAACTCCCGGGAAATCCTCTAACTCGCGCCCCAGCTCCCTTGTTTTGGAGCTGGATCCTCTTCAAGAAGATGACCCCACGCCATCACCGAGCCCTCGAGTCCAAAAAAATTCTCAAGCATTGTTCGACTTATCTTCGGGCACAAGCAAAGACGACACAGCCGGCGGAACGAGCAGTGCTCGGTTTTCGGAAGATCTTCGAGAGCGTTCGGGTAGTGTAGATACTTTAAAGAATGAAGATACCTTGTCGTCGACGCCGCGGGAATCCGGCGAGGATTTAGCGACGGATGCTTCTAAAACGAGCCACCTGGAGTCGTCTGCTGGTAAAAATCTTATGGAGATAGGTATTGGTAGTAAAAGCTCTGGAAAAGCAAACACTAAATTGAACTTGCTGGGGTTAGAGAACGCGTTGGATGACTTTAAAAACGACGACGAGGATTATGTAAGCTCGTCGCTTCTTAAGGTGTCGACAAATGAGGGTGGAAAGATGGCCATTCCACGAGAAAATTCTGGAAGCAAAGAAGACTTGCTCAGCTCATCGTATGGGTCTGAAGACTTAAACGTGAATTCACTTTCACTTGACTCGCTCGGCGACTTGAAAATGGGGCAAGTTATTTGTGTTGGAGACAAGAAAACCGGAACAGTCCGATATATTGGGCCCGCTGATTTCGCCCCAGGGGTTTGGATCGGCGTGGAACTTGACACTCCTTCAGGAAAAAACGACGGCTCTGTGGAAGGGCAGCGTTACTTCGCGTGCAAACCAAGGTATGGATTATTTGTTCGCCCAGAAAAATGTTTTCCCATTGAGTCGGCCAAACGAGAGGCGCCTTCGTCTGCAACGAAAGGGACTGGGAAGGACTCTAGCCCCTCGCAAAGCCCAGTACTCATGCGCAAACAGACTAGAGACAATCGACGCAAGAATGAGTGGAAAAGGAAGTCAAACATTCTCTTTTGA

Transcript

aawi_s0011.g138.t4

TTAGTAGGAAGGCCTGACGGAGCACACAACCCGGATATTCAATTGGGCGGCCTCGGGATCATGCAAGAACACTGTCAACTTGACATTGAAGAAAATGAAGTTTATGTCACGCCTTTCGCAAAGACAGGAACTTGTGTAAATGGCAGACTTGTCGAAGAGAAAACTCTGCTTAAACACGGAGATCGAATTCTCTGGGGGAACAATCATTATTTCAGGATTAACTGTCCTCGTCTTTCAGAAAGCGAACAACAGGTAGAGCAACCCGTAGACTTCCAGTTTGCACAAACAGAACTCATGATGAATGAGTTAAGTTCAGGACCCCTGAAAGATTCTTTGAAGGCTTTAGAAGAACAGTACAAAGCTGAGAAACAGGGAGCTCTGGACGAACAGCGTCTAATGTACGAAGAAAAGATCGAGGAGTTGAAGAATCAGATGGGGCCACCCCTAAACATGGAACGGGCGACAAGTATTGGTTCGTTCAGTTCGGGATACGGGTCGTCTCGGGTATCGTGGatggaggaaagCAGGGAAAATTTGATCCAATTGGAACAAAAACCATTGGTGCTCAGAGAGGAGGTCATCAGAGCTAACGCGCTTGTGAGAGAAGCGAACCAGTTGAGTGACGAAATGGGAAAGGAGACCGAGTTTGCAGTCACTTTGCAAATTCCGACGTCAAGTCTAAGCTTTGGGCGAAGTAGATCCGGCTTCAGTAGTGAAGTGGCGATAGTAGTCAAGCACAAATCAAAAGGAACACAAATTTGGTCGTTGGACAAATTGAGCAATAAAATCTACGACATGAGGGACTTGTACAACCAGTGTGTGGAGGAAGATATTCCATTTTCTGAAACGGATGAGAACTTAGATCTTTTCTTTGAAGTGGAGTGTCACACACTGATTGGAGTTGCGAACGTGTTCCTTGAGTGTTTGTTACATGACGTGAATCATGAATATGCAGCACCGATTATTAGCCAACAAGGAGAGGTTTGTGGCAGGTTAAAAGTAGAAGTTTCTAGAATATCAGAACGGACACAGAGAATGTTGCGGAAACAAACCCAaggcgaggacgatgacgaagatgaagacgaaggaGCAGGCGGAGAAGAGGACGAATTATTAGATGTACATGACGACGATGATACGGAAGATGAGGAAGAACTTGCCAAGGGCTCCAAAATGCACGTCGAAGTCAAAGTCGTTGAAGCGTACGATCTTCCTCCAGCACTCTGCAACTACGTGTTCTGTCAGTACAAATTTTGGAACGACGACAATACCATTGTCGTCCCGCCCATCAACGCCAGCATCTCCAACCCTGGACCGAAGACAAACACGATGATTTTCGAGCACACGCAGTGGCTCGAAGACATACTTACAGCTCTCGCCATGTTTTTGTTTGCGTCTGTTGATGTTTTTTTTTGTTCTGCTTTGCACAGCATGCGTGAAAAATGGTCAACGTCTCTGATGAAACGGCGTGAATATCTAGATGAGCAGATTCATTCTTTGATTGACAAACCAGACAAATCATCAAGCGACAAAGAGCGAGAGAGTTGGATGATTGACCAATGGGTTTGCCTAACTGAGGAGAGAAACGCTGTCTTAGTTCCCACACGCGGGAGTGGTATCCCTGGTGCACCTCCACTTGAAGGGACCATTCCTCTTGGAATGGAAAAGTTTAATCCGGTGATATTTCTGGATTTACAAAATGATGAGGTTAGGAGTGGCTGCATGGAGGAAGCTGGTCCCGCGGGTGTGGACTCTAACCTTTTGTTCGAGAATTCAGATAATATGATGGAGCTGCCAGTCATAAAATATGACCAAAAACAGGTTTCTGCCACTGTGTTGTGGGACTCGTCCATTCATGATTCTGTGTTCCTCAATCGCGTCACGCAATCGCACGAGCGAGTTTACCTCATTTTGAAGATCATTGTTCGCCTGGCTAGTCCCATTTCCATGGATTTAGTTCTCAGAAAACGGATATCGGTTAAAATCTATAAGAAGCAAAGTTGGAAAGACAGCTTGTTGAGAAGACTTGCAAAGTCAAGTGACCTTTCATTTGGGTTTGTCGGAAGCAGCCGTTTGGATTCTCCGGAGAACAATAAGCTGTGGAGAAATAGAGGGAGCAATCAAAGCGAATTTGCGTTGTCGGGTAGCTTCACCGACCCGAGGCCCGTGGCCAGGCCAAGTAAAGACGACATGGTAAACGATCTATTGCAACTCAACGAACAGTTCAGCTCATCGCCTAAAAACACTTCGGGTGTCGTTCTTCGAACTCCCGGGAAATCCTCTAACTCGCGCCCCAGCTCCCTTGTTTTGGAGCTGGATCCTCTTCAAGAAGATGACCCCACGCCATCACCGAGCCCTCGAGTCCAAAAAAATTCTCAAGCATTGTTCGACTTATCTTCGGGCACAAGCAAAGACGACACAGCCGGCGGAACGAGCAGTGCTCGGTTTTCGGAAGATCTTCGAGAGCGTTCGGGTAGTGTAGATACTTTAAAGAATGAAGATACCTTGTCGTCGACGCCGCGGGAATCCGGCGAGGATTTAGCGACGGATGCTTCTAAAACGAGCCACCTGGAGTCGTCTGCTGGTAAAAATCTTATGGAGATAGGTATTGGTAGTAAAAGCTCTGGAAAAGCAAACACTAAATTGAACTTGCTGGGGTTAGAGAACGCGTTGGATGACTTTAAAAACGACGACGAGGATTATGTAAGCTCGTCGCTTCTTAAGGTGTCGACAAATGAGGGTGGAAAGATGGCCATTCCACGAGAAAATTCTGGAAGCAAAGAAGACTTGCTCAGCTCATCGTATGGGTCTGAAGACTTAAACGTGAATTCACTTTCACTTGACTCGCTCGGCGACTTGAAAATGGGGCAAGTTATTTGTGTTGGAGACAAGAAAACCGGAACAGTCCGATATATTGGGCCCGCTGATTTCGCCCCAGGGGTTTGGATCGGCGTGGAACTTGACACTCCTTCAGGAAAAAACGACGGCTCTGTGGAAGGGCAGCGTTACTTCGCGTGCAAACCAAGGTATGGATTATTTGTTCGCCCAGAAAAATGTTTTCCCATTGAGTCGGCCAAACGAGAGGCGCCTTCGTCTGCAACGAAAGGGACTGGGAAGGACTCTAGCCCCTCGCAAAGCCCAGTACTCATGCGCAAACAGACTAGAGACAATCGACGCAAGAATGAGTGGAAAAGGAAGTCAAACATTCTCTTTTGAAAGAGTTCTTGAAGCACTGCATCGGGCACGAGGCAGTGCTCGTGAGTGTGTCGGGCACTCCGACGATTCCCGACACTTAGTTAGAATAATTAATGAGCAAGTATAGTAAATTACGAATTACAAGATGCCAAGAATGGTCCACATCAGGGAGACCATGTACTTTAAGGTAAACCACAGTGCTTTAAGGTAAACCACAGTACAGTCAAGATTTTCGGGAAACTATTATTTGGGAAGGGAGGGAATATAATTTTTATGGCAAGCCTCAGGGAAAGGGTTTAGATTAAATTGAATTTTAGAAAAAGTCGCGGAGGTCAAAAGCAGATTAATGCAACTGGAAGGTGAATTGCGATTTTAGGGACAACCGTTTTGTAACTTTCAAAGCAAACCACTTGTCTTATTCATTCAAAAATCGGGGAAGAAGCCATCGTTTTAAAGTTTCATAGCTTCGTGTATTTTATTCCGTTATTTTGAGGTTTTTATTCCCTTAATGCTCATATATTCACGAAAAAATAATCAACAGTTTAGGTTCGATGCTCTTTTGCTAGTGAGAATAGTTTCTTATTTTTCTGGTTTAAACTGTTTTCGACTTTGTCGTTATAGGTTCGGTCGGGAGCGTAAATCTATATTTTTACCATTTTACTGCACATTTATCTAAGGTGTACATCAGGTGTTATCGAAGGGCCTCTATTCTAGGTTAGAGGGAAATAGTTTATAATGTATAGTAAGAATTGGGGAAAAGTGGCGAATTGAATTGATTCTCTTTTTGCTGGGAGTCGCGTAATCCCGCCTTCTTGTTAAAAAAAAAATATGGTAAAGATTCGGCTACAATCCGAACTTCGTTCTTCCAGTTGGCCGTTACATTGGTATCTTTAAGGTCAAGACATCTAAAAATCAAGCGAATTCCGGCGACATGGTTTCTGGTTGGACATTGCATTCAGGGAATATATTTATTTACTGAATTTTTAATTTCACAACCGGTTGTTGTAATTTCTATTTAAATTCAAGATAATGGAAAAATCAGGCGAACCGTAGCGTTTCATTTGGAAATCCCGTGGCTTAAAATCTTCTCGACGTATACTTCGAGAACTTAAGTGGTTTTTAATTTAAGGAGGAAATATGATTTCCTACAAGTGAAAGTCGTGCAGTCGTATTGACAGAAGGGCACTGGGAATATTGGTTTTAAAGTAACCATTTTGAATATAAAGAACTATGTTTAAATAATTTTCGAATTTAATTTGGGAATATAAATAAATTTCCTTGGATGTATTTGTAGAAAGTCATGCTCGACCGTGGCGAGGGAGTGCGAGATCTTTCTGACAAAAGAAATTGTTTTTGCTTCAGCAATTTTCGACAAACTAGCCAATTATAGTGTAGAGAATTATATGAGTTTAGCGTTTCGAAACTTTCGAGTTTTTAAACTTAAAATTTCAAGTTTTGAAACTAAAAGTTTCGAGTTTTGAAACTCAAAATTTCGAGTTTCGAGTTTGCAAACGCAAGATTTCGAGTTTGTAAATTCGAAGTAGGAAAATTAATTACGAAACGGCATGTCCCTTACTGGCCACCGTAGTTTAGCTAGAATAATGGCGATCATACTGAAAAATTACTCGCAGCTTGTCTTTTGAAATTTCGTCGGAGCATCAAGCGCCGCCATTTCTCAATTCCAACAAAATGTTCAACGATTGGTGGCAAAATGGTCAAACATTATTTGGTCAAATATTTTCATCTAGCATTACAGTGGATTAGTAATCATTTTTTGGCTATTTAGCCACCTTTCTGAACTTTTCTTCTCGTCTTGATCAAGATCGAATCTTTTCATCCCGCTCGCTGTATTGAGGACAAAGGCATTATCGTTCATTCAGGGCCTTAATCTCTCTCTTTACTTCAGGGTGAATGGAAAAAGTGATATTTTTCGATACATTTAACGTTGGTCTAGCGTAGTTAACTTTGCCTTTTCTTAAATGTTTACCGTTGTAAACTATTGCTCTCATTTTTAGTCTGCTTTTAAGTTTAGTGAATAACTAAGCCTTAATTCGTTGTAAACAGGTCAATTTAACTTCAAACTGGTACAATTTCGGTAGTTAAAGTCAATACAAGTTTTAATGATTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9EQW7	Kinesin-like protein KIF13A OS=Mus musculus OX=10090 GN=Kif13a PE=1 SV=1
Q9H1H9	Kinesin-like protein KIF13A OS=Homo sapiens OX=9606 GN=KIF13A PE=1 SV=2
Q9NQT8	Kinesin-like protein KIF13B OS=Homo sapiens OX=9606 GN=KIF13B PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001329 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12423 all species →	KIF1B	Kinesin protein 1B	Family	Interproscan
PF12473 all species →	DUF3694	Kinesin protein	Family	Interproscan
PF01302 all species →	CAP_GLY	CAP-Gly domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036859 all species →	Homologous_superfamily	CAP Gly-rich domain superfamily	Interproscan
IPR022140 all species →	Domain	Kinesin-like KIF1-type	Interproscan
IPR022164 all species →	Domain	Kinesin-like	Interproscan
IPR000938 all species →	Domain	CAP Gly-rich domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18916 all species →	DYNACTIN 1-RELATED MICROTUBULE-BINDING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000132 all species →	Biological Process	establishment of mitotic spindle orientation	Interproscan
GO:0000743 all species →	Biological Process	nuclear migration involved in conjugation with cellular fusion	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005816 all species →	Cellular Component	spindle pole body	Interproscan
GO:0005819 all species →	Cellular Component	spindle	Interproscan
GO:0005875 all species →	Cellular Component	microtubule associated complex	Interproscan
GO:0031122 all species →	Biological Process	cytoplasmic microtubule organization	Interproscan
GO:0035371 all species →	Cellular Component	microtubule plus-end	Interproscan
GO:0051010 all species →	Molecular Function	microtubule plus-end binding	Interproscan
GO:0051286 all species →	Cellular Component	cell tip	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for aawi_s0011.g138.t4.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora awi tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora awi, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →