Gene detail

Detailed information of aawi_s0013.g146.t1 in Acropora awi

Genomic Location: sc0000013_pilon:2137154...2163871
NR annotation: XP_044182620.1, LOW QUALITY PROTEIN: cytosolic carboxypeptidase-like protein 5 [Acropora millepora]
Species abbreviation AAWI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

aawi_s0013.g146.t1

ATGGAGGAGAAAATAGGGCCTTTGACTTTCTTTTCAAACTTCGACTCGGGAAACTTAGCCCGAGTCGAAAAAGTAAGTCAAGAGGAAAACACCCATTCTTCAGAAGATGACGGGACAATTCCCATTTCTCCCGATTACGATTGTAATGTGTGGACTGCTCCTGACTGCGCAGGAATGGAATGTGAAAACGCCAACAGGACATGGTTTTATTTTGGCGTCAAAGGAGGTCAGCCAGGCAAACTGTTGCGGATAAATGTCATGAATTTGAACCGCCAAGGAAAGTTGTATGGTCAGGGAATGTCTCCTTTGGTTAAAGCAGTTCCATCGCGGAACAAATGGGAGAGGATACGAGACAAACCCAAATATGAAACAGTTGATGGGCATTTCAGATTGTCATTCACATATCGCTTCCCTGACCAGCGCAATGGTGTGCATTACTTTGCATTCTGTTATCCTTTTTCATATTCAGAATGTCAATCAAAGCTAGAGGAGTTTGATAAAACTTTCAAAAGTCAGCAGGTGACTCCTTTGTCATCAAAAAATGCCATCTATTACCATCGTGAACTTCTTTGTTATTCCTTGGATAAATTAAGAGTGGATCTGCTGACAGTTACATCAAGTAAAGGCATGATGGATAGCCGAGAGGAATGGCTGCCCCATCTTTTCCCCGAGAAAAGGGTTCCAAGAGCTCACAAGTTTCAAGGCAAAAAGGTGTTCTTCCTGAGTGCTAGAGTCCATCCAGGAGAGACACCATCAAGTTTTGTTTTTAATGGATTTTTGGACTTCATTTTACGGAAAGATGACCCAAGGGCAGCAGCATTGCGGGACCAATATGTTTTCAAGATGATACCAATGTTGAATCCTGATGGGGTTAAGCGGGGTCATTATCGCAGTGATCCTCAGGGTATAAATTTAAACCGTGTTTACCTTGACCCAGATCCTCTCCTTCATCCAACTATATTTGCTGCCAAGAGCATTGTCATGTACCATCATAACCATGGAGAGCGTCAGCAAATGCCTGAGTTAAGGAAAGAATGCAAATGCGACTTAGAGAAGCATTGTGATGCAGCAAACACTGTTTACGCACAAGACAGTTCAGATTCTGAAGTTAAGAATGTTGTCTGTGATGCTAGTATTGTGCCTCTGGAATTGAAGCCAGCATCACCAGAGGCAGGGTCTGTGAAATTGGAACTCCAGAAATTGATAAACAGTGCAGCTGATGGAAACAAGTTAGATGATGTAAACAATAACAAGGACAACATTGCATGTGGTGTCGCTCCTGAGAAGCCTGACTCTTTGCAGCTTAAGGGAAAAAAATTAGCTCCTACTGCGGTGAGTGATTCCTCCGGCAGTGAATCTCTTCAGGAGAAATCTGTGGCTAGTGGTCTCTCAAATGATAGCACAAGTAGTATTTCAAGTGAATGTCACTCAGAGCAGGCATCCAAAACTGGTCCTCCAAAGAATTCATTTGTGAACGGAGCTGCTCAAATTGAAACTTCAAAATCTCTGCGAAGCAACTCTTGGTCCAAGACTTCAACTGAACTCAACAGTGGTGTGGCATATTATGTGGATCTCCATGGCCATGCGTCTAAGCGAGGATGTTTTGTTTACGCAAATTACCTTGAGAATGAAGAAAACTATGTGAGCTCGGTTTTATTTCCAAAACTTATCGCCTTGAATTCAGCCAACTTTGATTTCTCAGCTTGCAATTTTACAGAAAAGAACATGTACAGCAAGGACAAGCGAGATGGGAGTTCTAAGGAAGGAAGTGGGCGAGTTGCAATTTATAAAGCTACCGGAATTATTCACTGCTACACACTGGAGTGTAATTATAACTGTGGAAGAACTGTGAACTGTCTGCCTCCTGCCACTTGTGACAGTGGTCGAGCTACCCCACCTCCTGCTCCAGGATTTCCACCCAAATATACCCCTGAGATTTATGAAGAGGTTGGGCGTGCAGTGGCAGTCTCTGTGCTGGACATGAACAATTCCAACCCATGGACACGCCTTCCACTCAGTGAGTTTTCATCTTTGGATGGTGTTAAGAACTGGGTGAAGAGATTTGTTAAGAGCTCCAAGAATGCCCCTTCAGTGCCCAAGAAACTGTCTCGCATTGTCAATAGAACTTCAAGCATGATAGCTGGAGCAACAGGTTGTACTCGGCATAAGCTATCGGCCTTGACAAGTTCTTCAAGTGACATGTCGTCAGACAATGCCGGTATCCCTGGAGGAAACCAAGTAGTGGAGACACACCTTGGTCAGAATGTAAAAAGTACTGTCAAGGAAGTGGGTAAGAAATCATCTTTAGAGAACAACTTCTTGAAGAGGCCATTGAACCTCGCAGCCACTCGTAGGTCTGTGATGCAAGCAAATGGAAACATGTTGATCAGTTCCAAAAACCATGAGGGCTCCTCCTCAAGTACGGGCTTGCAGACAGCATCAGCTAAGGAACATTTTGCTGAAACTGGTCCTGTGAGAGCTCATGTTTATAGATCAAAGGAACAGCCGCGGGTGTCACTTGACCTTCCTAAAACAGGTCCAACCTTGAAGTTTGTCCACAACCTGCGTCATCAGTCCTTGACCAATGCACAGCAGTTGCCATCTTCCAATAAGACCTTATCATCACCTATTGAAAACAAAATTAGAGGCAAGGCTAGCACCACTGGTACTCCTTTGGTAAATAATAAGAATTGTGGTGCCAATAATCAGAGTGACGATGAAAAGAAGAAGAAATCCGTTACTTGGCAACGCAAGAAAAATGGACGAAAGAAAGAGAAAGGTTTTGAAGCACAGGTTGCTGTTGATTCTGTTATGCAGACTACACAAGTCTCTCTACCAAGACCTGAGGAAGAAGCTACTAATTCAAATCAAGCAGCTGACAaagaagaagaagaagaagaagaagaaTTGAAAAACAACTGCCCTACATTATCGCGCCAAAATAGTTCTAAGAAGTTGATAAGCTGTAGCATGATGTCCTGTGAAGTGGTGGATATAAAAGAACTTCCTCACACTTCACAAAGTGGCACAAACGATCCTCTCTCCATTTTGAACAAGAGCTCAGTGAGCTGA

Transcript

aawi_s0013.g146.t1

NNNNNNACgaaatggtcacaaccatgcaagtcgtttattttcaatcgatgttttactcggccttggcgcgtggttgttgttaaggctgGAACTTTTTGCGGGCGCAAAAGAAAGAGAAGAAAATCTTTGGCCATTCTGTGAGGCACTTGCTCGTGGGAGTGGTCATGAAGGCCATTTGTGGCTTTTCAAGAtggcttgccccgtctcgattagcttagatatttgcgggGCGTGCAAAGAGGGCTTACGAACCTTGATTGAATATTAGCTTTACAACTTCAAGTTACAACTGGCCGAGTTGTGAGGGACTGAGCTCTAGTAAACATGGTTGCGAGGCAACCGAGAAGCGCGACTCGTGTTCAAAATGGCGGAAAAATAGCGTCCATCAAGAGTGCGTTAAAGAAAATAAAGAAAAGGTATTTGTAGTCGGATTCTTCAGCTTGGCGCAAAAGCCTTTTAGATGTTATGGAGGAGAAAATAGGGCCTTTGACTTTCTTTTCAAACTTCGACTCGGGAAACTTAGCCCGAGTCGAAAAAGTAAGTCAAGAGGAAAACACCCATTCTTCAGAAGATGACGGGACAATTCCCATTTCTCCCGATTACGATTGTAATGTGTGGACTGCTCCTGACTGCGCAGGAATGGAATGTGAAAACGCCAACAGGACATGGTTTTATTTTGGCGTCAAAGGAGGTCAGCCAGGCAAACTGTTGCGGATAAATGTCATGAATTTGAACCGCCAAGGAAAGTTGTATGGTCAGGGAATGTCTCCTTTGGTTAAAGCAGTTCCATCGCGGAACAAATGGGAGAGGATACGAGACAAACCCAAATATGAAACAGTTGATGGGCATTTCAGATTGTCATTCACATATCGCTTCCCTGACCAGCGCAATGGTGTGCATTACTTTGCATTCTGTTATCCTTTTTCATATTCAGAATGTCAATCAAAGCTAGAGGAGTTTGATAAAACTTTCAAAAGTCAGCAGGTGACTCCTTTGTCATCAAAAAATGCCATCTATTACCATCGTGAACTTCTTTGTTATTCCTTGGATAAATTAAGAGTGGATCTGCTGACAGTTACATCAAGTAAAGGCATGATGGATAGCCGAGAGGAATGGCTGCCCCATCTTTTCCCCGAGAAAAGGGTTCCAAGAGCTCACAAGTTTCAAGGCAAAAAGGTGTTCTTCCTGAGTGCTAGAGTCCATCCAGGAGAGACACCATCAAGTTTTGTTTTTAATGGATTTTTGGACTTCATTTTACGGAAAGATGACCCAAGGGCAGCAGCATTGCGGGACCAATATGTTTTCAAGATGATACCAATGTTGAATCCTGATGGGGTTAAGCGGGGTCATTATCGCAGTGATCCTCAGGGTATAAATTTAAACCGTGTTTACCTTGACCCAGATCCTCTCCTTCATCCAACTATATTTGCTGCCAAGAGCATTGTCATGTACCATCATAACCATGGAGAGCGTCAGCAAATGCCTGAGTTAAGGAAAGAATGCAAATGCGACTTAGAGAAGCATTGTGATGCAGCAAACACTGTTTACGCACAAGACAGTTCAGATTCTGAAGTTAAGAATGTTGTCTGTGATGCTAGTATTGTGCCTCTGGAATTGAAGCCAGCATCACCAGAGGCAGGGTCTGTGAAATTGGAACTCCAGAAATTGATAAACAGTGCAGCTGATGGAAACAAGTTAGATGATGTAAACAATAACAAGGACAACATTGCATGTGGTGTCGCTCCTGAGAAGCCTGACTCTTTGCAGCTTAAGGGAAAAAAATTAGCTCCTACTGCGGTGAGTGATTCCTCCGGCAGTGAATCTCTTCAGGAGAAATCTGTGGCTAGTGGTCTCTCAAATGATAGCACAAGTAGTATTTCAAGTGAATGTCACTCAGAGCAGGCATCCAAAACTGGTCCTCCAAAGAATTCATTTGTGAACGGAGCTGCTCAAATTGAAACTTCAAAATCTCTGCGAAGCAACTCTTGGTCCAAGACTTCAACTGAACTCAACAGTGGTGTGGCATATTATGTGGATCTCCATGGCCATGCGTCTAAGCGAGGATGTTTTGTTTACGCAAATTACCTTGAGAATGAAGAAAACTATGTGAGCTCGGTTTTATTTCCAAAACTTATCGCCTTGAATTCAGCCAACTTTGATTTCTCAGCTTGCAATTTTACAGAAAAGAACATGTACAGCAAGGACAAGCGAGATGGGAGTTCTAAGGAAGGAAGTGGGCGAGTTGCAATTTATAAAGCTACCGGAATTATTCACTGCTACACACTGGAGTGTAATTATAACTGTGGAAGAACTGTGAACTGTCTGCCTCCTGCCACTTGTGACAGTGGTCGAGCTACCCCACCTCCTGCTCCAGGATTTCCACCCAAATATACCCCTGAGATTTATGAAGAGGTTGGGCGTGCAGTGGCAGTCTCTGTGCTGGACATGAACAATTCCAACCCATGGACACGCCTTCCACTCAGTGAGTTTTCATCTTTGGATGGTGTTAAGAACTGGGTGAAGAGATTTGTTAAGAGCTCCAAGAATGCCCCTTCAGTGCCCAAGAAACTGTCTCGCATTGTCAATAGAACTTCAAGCATGATAGCTGGAGCAACAGGTTGTACTCGGCATAAGCTATCGGCCTTGACAAGTTCTTCAAGTGACATGTCGTCAGACAATGCCGGTATCCCTGGAGGAAACCAAGTAGTGGAGACACACCTTGGTCAGAATGTAAAAAGTACTGTCAAGGAAGTGGGTAAGAAATCATCTTTAGAGAACAACTTCTTGAAGAGGCCATTGAACCTCGCAGCCACTCGTAGGTCTGTGATGCAAGCAAATGGAAACATGTTGATCAGTTCCAAAAACCATGAGGGCTCCTCCTCAAGTACGGGCTTGCAGACAGCATCAGCTAAGGAACATTTTGCTGAAACTGGTCCTGTGAGAGCTCATGTTTATAGATCAAAGGAACAGCCGCGGGTGTCACTTGACCTTCCTAAAACAGGTCCAACCTTGAAGTTTGTCCACAACCTGCGTCATCAGTCCTTGACCAATGCACAGCAGTTGCCATCTTCCAATAAGACCTTATCATCACCTATTGAAAACAAAATTAGAGGCAAGGCTAGCACCACTGGTACTCCTTTGGTAAATAATAAGAATTGTGGTGCCAATAATCAGAGTGACGATGAAAAGAAGAAGAAATCCGTTACTTGGCAACGCAAGAAAAATGGACGAAAGAAAGAGAAAGGTTTTGAAGCACAGGTTGCTGTTGATTCTGTTATGCAGACTACACAAGTCTCTCTACCAAGACCTGAGGAAGAAGCTACTAATTCAAATCAAGCAGCTGACAaagaagaagaagaagaagaagaagaaTTGAAAAACAACTGCCCTACATTATCGCGCCAAAATAGTTCTAAGAAGTTGATAAGCTGTAGCATGATGTCCTGTGAAGTGGTGGATATAAAAGAACTTCCTCACACTTCACAAAGTGGCACAAACGATCCTCTCTCCATTTTGAACAAGAGCTCAGTGAGCTGACAGCTTCAACAATAAAATTAGTTTTTACGTGTTCACTATAAAAGTATGTTCAAATCGAATAATTCAAGGTGTAAAGCTGTAGATATAAAAATGAATAAGTATTTCTCTGTAACCATGATAGTCTCTTTTAAAAAAATGTTTTTAGAGCTGCCTCTTATGAAATATAATAAGCAAAATGCATTTATTTCCTAAAATGCTTACTGTATCTATCTTAGTTTATGCTTTTTGTCTGTCTGAAGCCAAAGAGTACTTTGTCAAATATGTTTTTTTTTTCCCAAGCTTGTTTTCTTCTTCTAGAAAATATTTATTGGTGTTGTTGTTTTTACCTGCATGCAATCTTTTGCATTTCTGTTTTAATGATTTTACTGGTGTAACAATAATTATTAGTTTCCAAACAACAATTTTACCAGACTAAGTGAAAAATAAAGCAGTGCTTGTCTGTTCCTCCGTGAAAAAGGATGTGTTCAGGGTAGCAATCAAATTTAACTTTTAAGTCTTTTCATTGGCCTTAGAAGTTTCTTTTTCTTTATTTTTAACAAAGAGATCTGATTATTTTTTAACTCAGTGATGAATAAATTAAATAAATTAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B0JZV4	Cytosolic carboxypeptidase-like protein 5 OS=Xenopus tropicalis OX=8364 GN=agbl5 PE=2 SV=1
Q8NDL9	Cytosolic carboxypeptidase-like protein 5 OS=Homo sapiens OX=9606 GN=AGBL5 PE=1 SV=1
Q09M02	Cytosolic carboxypeptidase-like protein 5 OS=Mus musculus OX=10090 GN=Agbl5 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006113 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18027 all species →	Pepdidase_M14_N	Cytosolic carboxypeptidase N-terminal domain	Domain	Interproscan
PF00246 all species →	Peptidase_M14	Zinc carboxypeptidase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034286 all species →	Domain	Cytosolic carboxypeptidase-like protein 5 catalytic domain	Interproscan
IPR040626 all species →	Domain	Cytosolic carboxypeptidase, N-terminal	Interproscan
IPR050821 all species →	Family	Cytosolic carboxypeptidase	Interproscan
IPR000834 all species →	Domain	Peptidase M14, carboxypeptidase A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12756 all species →	CYTOSOLIC CARBOXYPEPTIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004181 all species →	Molecular Function	metallocarboxypeptidase activity	Interproscan
GO:0035608 all species →	Biological Process	protein deglutamylation	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23438	AGBL5, CCP5; cytosolic carboxypeptidase protein 5	EC:3.4.17.24	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.