Gene detail

Detailed information of aawi_s0014.g67.t1 in Acropora awi

Genomic Location: sc0000014_pilon:748020...762291
NR annotation: XP_029188138.2, LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 35-like [Acropora millepora]
Species abbreviation AAWI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

aawi_s0014.g67.t1

ATGCCTGTTACGCAAACAGCTTCACAGGAAGACCAGGAGAAACTCTTAGATGAGGCAATCCAAGTTGTTAAGTCCCAGTCATTTCAGATGAAGAGATGTTTGGACAAGGGAAAACTTATGGACGGTTTGAAACATGCCTCAAACATGCTGAGCGAGCTGAGAACCTCGATGCTTTCCCCGAAGAGTTATTACGAGTTGTACATGGCAATATCTGATGAACTGCGACATCTAGAACTGTTCTTGGTGGATGAGTTTCAGAAGGGTCGCCGAGTTGCAGATCTTTACGAACTTGTTCAGTATGCTGGAAATATTGTTCCAAGATTGTATTTGTTGATAACAGTTGGAGCTGTTTACATTAAGGCTAAAGAGGCATCCCGCAGGGATATACTGAAAGACTTGGTTGAAATGTGCCGAGGCGTTCAACATCCCTTAAGAGGCCTCTTCCTTCGTAATTACCTTTTGCAGTCAACAAGAAACATGTTACCAGACACTGGAGAAGATGAATCAGGAGCTGAGTCTGAACATCAGGATGGAACTGTGAAGGATTCCATTGCATTTGTGCTTTTAAACTTTGCTGAGATGAACAAGTTGTGGGTACGAATACAACACCAAGGTCACACAAGGGACAAAGAAAAAAGGGAGCGTGAGCGGCACGAACTCCGCATTTTGGTTGGCACTAATCTTGTCAGACTGAGTCAGCTTGATGGAGTAAATGTCGAAACCTACCAAAAGAATGTCCTTCCAGGGGTATTTGAACAAACTGTGAGTTGCCGAGATCCCATAGCTCAGGAATATCTCATGGAATGTGTCATTCAGGTCTTTCCAGATGAGTTTCATCTGAGGACTCTGAGCAAGTTTCTTCAAGCATGTGCTGATCTCCATGAAAAAGTCAACGTTAAAAACATTATCATATCACTTATTGACAGGCTAGCTTTATTTGCTAACCGGGAAGATGGTGGAATCCCCAGGGAAATAAAGCTGTTTGATGTTATGTCAGAACAAGTATCTTCTGTTGTGCAGTCTCGCAGTGAAATGCCCGCAGAGGACATTGTGGCTTTGCAAGTTTCGCTGATAAACCTTGCTCTGAAGTGCTATCCTGATAAAGTTGATTATGTGGACAAAGTCTTGCAGTACACATCAGAAATCTTCAGCAAGCTTAACCTTTCTCATATGGACAAAAACAATGCAGTTTCCAAGGAACTAACCAGACTTCTCAAGATCCCAGTGGATTCTTACAGCAATATTCTTACTCTCCTAAAACTTGAGTATTTTGCTCCTCTGTTCGAGTACTTTGACTATAGTTCAAGGAAAGAAATGGCTTTGTATGTGGTGACCAATGCAGTGGAAAGTGCTCTTAAAATTCCTACACAAGAGCAGGTGGATGCTGCTCTTAATCTTGTTTCAACGTTGGTTTGTGACCAAGAAGATCAGCCATCTGAACCAGATGATCCAGAAGATTTTGTTGAAGAGCAGAGCCTGGTGGGCAAATTTGTTACCCTACTCCAAGGGGATACCCCAGACCAACAGTATCTGATTCTCAATACAGCGAGAAAGCATTTTGGAAGCGGTGGTGAGAAGAGGATAAAGTTCACTTTGCCACCAATTGTGTTCTCTGCATTTCAGCTGGCATATCAGTACAGAGATGCTAGTGATCAGGATGATAAATGGGACAAGAAATGCCAGAAGATTTTTCAGTTTTGCCATCAGACCATAGCAGCGCTTGCCAAAGCCGAATATGCGGAGCTATCACTTAGACTATTCTTGCAAGGCGCTCTTGTGGCAGACCAGGCAGAGTTTTCCAATGCTGAAACAGTCGCTTATGAGTTCATGAGCCAGGCATTCGCTCTTTATGAAGATGAGATCAGTGATTCCAAGGCTCAGTTAGCAGCCATTACACTGATTATCAGCACATTTGAGCAGATGAGCTGTTTCGGCGAGGAGAACCACGAGCCATTACGCACCCAGTGCGCTCTGGCTGCATCAAAGCTCCTCAAGAAACCAGATCAATGTAGAGCTGTGATCGTGTGCTCTCACTTGTTCTGGTCTGGGAAAAGCCGAGAATCCGATGGTGGAGAGTGCCGTGAGAGCAAGCGAGTCACTGAATGTTTGAAGAAGGCTGTGCGCATCGCCAGTCAGTGTATGGACAGCACCATTCAAGTTCAGTTGTTTGTTGAAGTCCTTAATCGCTACCTTTACTATTTTGAAAAGAAAGCGGAAACGGTTACGGTTACTGTTATCAATCAACTACTGGAGAAAATACGCCAAGATCTTCCAGTCTTAGACGAAACAGAGGAAACCGAATTGATTAGAAGACAATTTGAAAACACGATACATCATGTACAACTCAAGAAAGAGTCGCCTGAGGAGGGGTCTCCTTCGTATGAAGACATAAGATTATAA

Transcript

aawi_s0014.g67.t1

CTCCCAAGTCACGTGCTAGATCTAGACCTTGCATGTTTCAGGGAGGAGAAGGGAGATCGCGAAAATGCCTGTTACGCAAACAGCTTCACAGGAAGACCAGGAGAAACTCTTAGATGAGGCAATCCAAGTTGTTAAGTCCCAGTCATTTCAGATGAAGAGATGTTTGGACAAGGGAAAACTTATGGACGGTTTGAAACATGCCTCAAACATGCTGAGCGAGCTGAGAACCTCGATGCTTTCCCCGAAGAGTTATTACGAGTTGTACATGGCAATATCTGATGAACTGCGACATCTAGAACTGTTCTTGGTGGATGAGTTTCAGAAGGGTCGCCGAGTTGCAGATCTTTACGAACTTGTTCAGTATGCTGGAAATATTGTTCCAAGATTGTATTTGTTGATAACAGTTGGAGCTGTTTACATTAAGGCTAAAGAGGCATCCCGCAGGGATATACTGAAAGACTTGGTTGAAATGTGCCGAGGCGTTCAACATCCCTTAAGAGGCCTCTTCCTTCGTAATTACCTTTTGCAGTCAACAAGAAACATGTTACCAGACACTGGAGAAGATGAATCAGGAGCTGAGTCTGAACATCAGGATGGAACTGTGAAGGATTCCATTGCATTTGTGCTTTTAAACTTTGCTGAGATGAACAAGTTGTGGGTACGAATACAACACCAAGGTCACACAAGGGACAAAGAAAAAAGGGAGCGTGAGCGGCACGAACTCCGCATTTTGGTTGGCACTAATCTTGTCAGACTGAGTCAGCTTGATGGAGTAAATGTCGAAACCTACCAAAAGAATGTCCTTCCAGGGGTATTTGAACAAACTGTGAGTTGCCGAGATCCCATAGCTCAGGAATATCTCATGGAATGTGTCATTCAGGTCTTTCCAGATGAGTTTCATCTGAGGACTCTGAGCAAGTTTCTTCAAGCATGTGCTGATCTCCATGAAAAAGTCAACGTTAAAAACATTATCATATCACTTATTGACAGGCTAGCTTTATTTGCTAACCGGGAAGATGGTGGAATCCCCAGGGAAATAAAGCTGTTTGATGTTATGTCAGAACAAGTATCTTCTGTTGTGCAGTCTCGCAGTGAAATGCCCGCAGAGGACATTGTGGCTTTGCAAGTTTCGCTGATAAACCTTGCTCTGAAGTGCTATCCTGATAAAGTTGATTATGTGGACAAAGTCTTGCAGTACACATCAGAAATCTTCAGCAAGCTTAACCTTTCTCATATGGACAAAAACAATGCAGTTTCCAAGGAACTAACCAGACTTCTCAAGATCCCAGTGGATTCTTACAGCAATATTCTTACTCTCCTAAAACTTGAGTATTTTGCTCCTCTGTTCGAGTACTTTGACTATAGTTCAAGGAAAGAAATGGCTTTGTATGTGGTGACCAATGCAGTGGAAAGTGCTCTTAAAATTCCTACACAAGAGCAGGTGGATGCTGCTCTTAATCTTGTTTCAACGTTGGTTTGTGACCAAGAAGATCAGCCATCTGAACCAGATGATCCAGAAGATTTTGTTGAAGAGCAGAGCCTGGTGGGCAAATTTGTTACCCTACTCCAAGGGGATACCCCAGACCAACAGTATCTGATTCTCAATACAGCGAGAAAGCATTTTGGAAGCGGTGGTGAGAAGAGGATAAAGTTCACTTTGCCACCAATTGTGTTCTCTGCATTTCAGCTGGCATATCAGTACAGAGATGCTAGTGATCAGGATGATAAATGGGACAAGAAATGCCAGAAGATTTTTCAGTTTTGCCATCAGACCATAGCAGCGCTTGCCAAAGCCGAATATGCGGAGCTATCACTTAGACTATTCTTGCAAGGCGCTCTTGTGGCAGACCAGGCAGAGTTTTCCAATGCTGAAACAGTCGCTTATGAGTTCATGAGCCAGGCATTCGCTCTTTATGAAGATGAGATCAGTGATTCCAAGGCTCAGTTAGCAGCCATTACACTGATTATCAGCACATTTGAGCAGATGAGCTGTTTCGGCGAGGAGAACCACGAGCCATTACGCACCCAGTGCGCTCTGGCTGCATCAAAGCTCCTCAAGAAACCAGATCAATGTAGAGCTGTGATCGTGTGCTCTCACTTGTTCTGGTCTGGGAAAAGCCGAGAATCCGATGGTGGAGAGTGCCGTGAGAGCAAGCGAGTCACTGAATGTTTGAAGAAGGCTGTGCGCATCGCCAGTCAGTGTATGGACAGCACCATTCAAGTTCAGTTGTTTGTTGAAGTCCTTAATCGCTACCTTTACTATTTTGAAAAGAAAGCGGAAACGGTTACGGTTACTGTTATCAATCAACTACTGGAGAAAATACGCCAAGATCTTCCAGTCTTAGACGAAACAGAGGAAACCGAATTGATTAGAAGACAATTTGAAAACACGATACATCATGTACAACTCAAGAAAGAGTCGCCTGAGGAGGGGTCTCCTTCGTATGAAGACATAAGATTATAAGTTTTATTTCCTAATAGATATTCTCTCAGCGATCGACGTGCTTAATTGATTTAAATGTAGGGTCGAAAGGCGATGACTAAATTTTAACCAAAGTATTTAGCGTGGAAAAATTATTGGCTTGTGCATAGAGAGGTATGAGTAATCAACGACCACAAATTTCATGATATATTGACCGAGTACGGTGCATTGCCCCCATGCGCATGCGCATAACGGCCCACTAATGATACTGCCCGGGCGAGAAAGGAATGCGCCAATGTCTCGGCAATCAGGTCTTTAAATAGTCAAATGGCCACTTAGATTTCTTGGCTTTTTGAAGCGCCAAACTCGGTTGACAGAGCAAGGCTAAGTTTTGGTGGTGATTTGGTGTATGCTAGTTTTCAACTCTGTAGAGTAGAGAGGAGCGGGAACTTCGGAAGTGGTAACGGATGAAGCCTCATTGGCTAATTAAGTGCTTCACTTGAAGTTACGCCCCAAACGGATTCAGTGTATTCTCTGGTTCTCAAGCAACTTCTGTTTTACGAACATGCGGTCTCTTGGGGACCTATTTTATTGTCTTAatatactctgttaccaatacggcggccactttgagttctttttctttcaaaagatattatgggatgcctaggggcaaatgtgcacttatATAAAAGGCATAAATTTTGCTTTGGTGTAAAGTTGTCAAACCAGGCTAATTTTTATAATTCCTTAGACTCAAGTTAATTGTAACCTGAAATAATGATCTGGTTTGAAATTTTTAACCCATGGCATTCGCTTAGTAAGCACCTCATAGTTAGAACCTtttctgtttttgtttttgtttgttgttgttttgtttgtttctttgttttCAGAACAACAGAGTTCAAGATGGCCGCCGTTTCGACAAAACATTTTACATGGGCCGATTATTTGACAAAATAAGGATTCCAAAAGGGGCCTTGGTTATCTTGAACGCGGAGGTCTCATTTCCGTGCCGCCTTGATATCGTTTTGTTAGCATAGTGAAAGAAAAAGAGGCAATCCTCGGGGAATTCAACTTAATCAGCGTTGACATCTTTATTCAAAGTTTCAAAGATCTTGTAAGGGGCGTTCCGGTGTCCAGGGGTGGGAATTTTCAATGCGCTCCGTAATATCACTGTTTTTGTTTTGTGTCGTAACCATGTCTTTCCCCATGGTAGCATTACATCAGAGTTTTCATTTAGTTTGTAGTCTCTCTCTCTGCCTGGCAAACAGCCAAGAAATTAAAATGATATAAACCATTTACAGTAAGTTTTGTAAACGGTTATTTCTCGTAGAGAAAAATGTGCGCTAATTCAGCGAAATGAAATCCCTGTGTAAGCGCATAGTTTTGAAATCCTGAATAAATGTGTTTTTCTTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9EQH3	Vacuolar protein sorting-associated protein 35 OS=Mus musculus OX=10090 GN=Vps35 PE=1 SV=1
Q2HJG5	Vacuolar protein sorting-associated protein 35 OS=Bos taurus OX=9913 GN=VPS35 PE=2 SV=1
Q96QK1	Vacuolar protein sorting-associated protein 35 OS=Homo sapiens OX=9606 GN=VPS35 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006115 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03635 all species →	Vps35	Vacuolar protein sorting-associated protein 35	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042491 all species →	Homologous_superfamily	Vacuolar protein sorting-associated protein 35, C-terminal	Interproscan
IPR005378 all species →	Family	Vacuolar protein sorting-associated protein 35	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11099 all species →	VACUOLAR SORTING PROTEIN 35	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005770 all species →	Cellular Component	late endosome	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0015031 all species →	Biological Process	protein transport	Interproscan
GO:0030904 all species →	Cellular Component	retromer complex	Interproscan
GO:0030906 all species →	Cellular Component	retromer, cargo-selective complex	Interproscan
GO:0042147 all species →	Biological Process	retrograde transport, endosome to Golgi	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18468	VPS35; vacuolar protein sorting-associated protein 35	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.