Gene detail

Detailed information of aawi_s0017.g184.t1 in Acropora awi

Genomic Location: sc0000017_pilon:2649716...2662135
NR annotation: XP_029185833.2, potassium voltage-gated channel subfamily D member 3-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aawi_s0017.g184.t1

AAAATATGGGAAGGAAAGACAAATTACCTCTTACTCGCCTATCATAAGGACCAAAACCACTAGAAAACGCCACGAAGTACGAATTTTTGCTTTTTGTTATATTGAGCAGCGACAAGTAGCATCGTTGGACAGGTACTCGAAATAGTCTTAAAGACGAAACCTCAATTGCCTTTTACCAAGACAAAATTTGAATACAAACTATTCAGTGAATGACCTTAGAGTCTAAAACCAATCTTCGAAAACTAAGAACGGAAAAAGTGGACCAACGGGTCACTTTAAATGTCAGCGGACGGCGTTACTGTACGTGGGACAGCACCCTCAAGAAATACCCAAATACTTTACTGGGCAGCGATGCTATCAAGGTTTTCTTTGACAAGGACAGGAAAGAGTATTTTCTGGACAGAGACCCTCACATGTTCCGGTACATCCTCAATTTTTACCGCGATGGGAAGTTTCATCTCTCTAGTGAAGACTGCGTAGGTGCGTTTCGCGAAGAGCTAAGTTTTTATGGAATTAAGGATGAGAGCATCTACGATTGCTGTTTGGAAGAATTTAACAATCTTATCAACAAAACATCCAATAACGAGCAGGAAACAAAAGAGTGTGATTGTGCCGAATTTCGGAGATCTAGAAACAGGTCGTTTCTTCGCAATTGGTTGTGGAATTTGCTAGACAATACAGAAACGACGTTTTTAGGAAAATGTGTCCAGGGCCTTATCGTGATTCTCATTTATCTTAGTATCGTGAGTACCATTGTGGAAACAGAACGATGCTGCAAAGAGCTTACATTCCTAGAAAAGTACCCAGACATCTTCTTTACGTTCGACGCTGTTTGTATAGGCGTATTTACGTTGGAATACATTCTCAGATTATACGCTGCCGAAAACCGTTGGAAATTCATCATTAACAAAATGAATTTTGTAGATTTATTAGCCGTTGCACCCTTCTATATCATGCTCTTATTTGAACACTTCTCCCCCTCATCTTCGTCCGCGGTTGAGAATGCTAGCGCTCTTATGGTCCTGCGCATGCTCAGGGTATTTCGAATATTCAAGCTTTCTCGTCATTCAAAACACATGAGGCAGATGGGAAGAGCGCTGAAGCGTGCCGTGTTTGATCTTGGCTTTTTGTTCTTTGCGTTTTTGTTGCTGAATATTTTATTTTCTAGTATGATGTATTACGTAGAGCAGACGAAATCTGAGGAAACACAATTCAAGAGTATTCCAGAGAGCATGTGGTATTCTACAATTACAATGATGACCGTAGGTTATGGCGACATGATTCCAATCACAATTATTGGAAAGATTTTGGGTTCAGTCTGCTGTCTTTGTGGAATTATTATGTTGACTCTACCAATACCGATCATACAAGAAAGAACCGCAAAGATTAAGGAGTCATAGACGGCATACCATTTATCGTACATTCAGTCCATGGTACTTACGCAGCTCAGTTACAAATGGCTATTCTCACAGTTTAAATTCATAAGAGAACAAGCAAAGAGGCATCACCTTATTTAAGGGACAGGGTATTTAAAAAAGGCGAAATCTGTCCATCTGTTTATTCACACATTTTCGTGACGGCTCGAGTTTTGTTAAGATGTCACGCAGTTCTGTCAAGTTCTTTGTAGATTTGGAGACGCGAGTTAACAGTTTCAGTTCTTTTCGGTTTGAGATATTAATTGAAAGCCTCGGATCTGTTACATTTCTAATCATTTCGACGTTTTATCAAGTACTAAATGAAATTAGATTCAATTGCATATCACAGCCTCTTTAAGAATCAGGAGAAGCGCTGTCACGCGTGACCACCACATTTCCCATCCCTTCAGTGACAGCTTTATTTGTAGTTGTTGTCGACGGATCACTGCAGCCAATTTAATTTTATGGCAACGAGTGTTCTATAAATACTCATTTCGGACTGCGCTGAAAGGCCCACTCAGGCCATAGGAATACTCCTACGTGGTCTCCTTGATCGATGAGAGGACTGCGTCATCAAGCCGGAGCATCTTGACTTCGACAACTCTCGCCTGAATTCGCTCTCTCGTCGGAAACCATGCGAAACATATAATTCGACTGAATTCCTAATCATACTAATTAGAATTCGTCTTGGTGTTACAGTATTTTGTCCATTCATGTTTGGAGACGTAGACAAATAGAATTGTCAGGCAAGACATACGATTCCCATTTGTTTGTGGACTATACTCTTTAGCTCGTCACGTAATCTGTCCACTCAAATGCATGTCCTTCTCTTGTTCGGGGTTTCatctttcagatagcttgttttcctttgctgtcccaggctgattatattgaataaaccccgtaattagcaactatcttaaaagctgggggaatattagaattgaacttcgacagcgctgcaattattttaccagaactggtattaaatgtaattttaaatgttactgagcagttgttcaaattgaaagcatgagaattgtttaccactgtcgcgcccatgtgaaatgtaagcctgctatttctaggcacctcgtggatacgtggtttattcacctcgggctgaggcttcggtgaatacatcacatatcccttcattgtctaaaaataacccttacgtaTCACGACCTATGATGTGATCTTTGATATGCGATAAAATGTTTGTCCACAACTGAAAAAAAAGCGACACACCCTGGTAAATCAGAAATCGTTGCCTGCTACTGCATTTCCAGATCCTGGGATCTCCATCGTTCTTATTAATAGTGTCGAAAGTAACTTTTTTTCATCTGACACTCTTGTCTTTCGCAACTTGACGTAATTACGTGATTCCGAACCCCTTTTCCTTCTCAGGTTTGCGGTTATGCTGTAATTATAGTATGAGTCCATGATCTGCTTGAGAAGTAAGTAAATTGGTACATGTATTAGCATAAGTTAGGGCATTTTGCATTAATACTGTAAGATATATGCAGTTCTTCAACGCAAGATTGAAATAAAGTAACATGAGAGATATGTAGGTGAAATAGCAAATAAAGAACATATTTTTTT

Protein

Uniprot

Uniprot term	Description
Q9TTT5	A-type voltage-gated potassium channel KCND3 OS=Oryctolagus cuniculus OX=9986 GN=KCND3 PE=2 SV=1
Q9UK17	A-type voltage-gated potassium channel KCND3 OS=Homo sapiens OX=9606 GN=KCND3 PE=1 SV=3
Q9Z0V1	A-type voltage-gated potassium channel KCND3 OS=Mus musculus OX=10090 GN=Kcnd3 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00520	Ion_trans	Ion transport protein	Family	Interproscan
PF02214	BTB_2	BTB/POZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011333	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR000210	Domain	BTB/POZ domain	Interproscan
IPR005821	Domain	Ion transport domain	Interproscan
IPR003971	Family	Potassium channel, voltage dependent, Kv9	Interproscan
IPR003131	Domain	Potassium channel tetramerisation-type BTB domain	Interproscan
IPR027359	Homologous_superfamily	Voltage-dependent channel domain superfamily	Interproscan
IPR003968	Family	Potassium channel, voltage dependent, Kv	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11537	VOLTAGE-GATED POTASSIUM CHANNEL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0005249	Molecular Function	voltage-gated potassium channel activity	Interproscan
GO:0006813	Biological Process	potassium ion transport	Interproscan
GO:0008076	Cellular Component	voltage-gated potassium channel complex	Interproscan
GO:0016021	Cellular Component	membrane	Interproscan
GO:0071805	Biological Process	potassium ion transmembrane transport	Interproscan
GO:0051260	Biological Process	protein homooligomerization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04892	KCND2, KV4.2; potassium voltage-gated channel Shal-related subfamily D member 2	-	Ion channels	ko04040	deepkoala