Gene detail

Detailed information of aawi_s0017.g204.t1 in Acropora awi

Genomic Location: sc0000017_pilon:3011955...3014585
NR annotation: XP_029185856.1, small nuclear ribonucleoprotein F [Acropora millepora]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q3T0Z8	Small nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=SNRPF PE=3 SV=2
P62306	Small nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=SNRPF PE=1 SV=1
P62307	Small nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Snrpf PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01423	LSM	LSM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016487	Family	Sm-like protein Lsm6/SmF	Interproscan
IPR034100	Family	Small nuclear ribonucleoprotein F	Interproscan
IPR010920	Homologous_superfamily	LSM domain superfamily	Interproscan
IPR001163	Domain	Sm domain, eukaryotic/archaea-type	Interproscan
IPR047575	Domain	Sm domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11021	SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-F	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005685	Cellular Component	U1 snRNP	Interproscan
GO:0034715	Cellular Component	pICln-Sm protein complex	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0000387	Biological Process	spliceosomal snRNP assembly	Interproscan
GO:0005681	Cellular Component	spliceosomal complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11098	SNRPF, SMF; small nuclear ribonucleoprotein F	-	DNA replication proteins	ko03032	deepkoala