Detailed information of aawi_s0023.g62.t1 in Acropora awi

Genomic Location: sc0000023_pilon:898329...970867
NR annotation: XP_029186226.1, PCI domain-containing protein 2-like isoform X1 [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5JVF3PCI domain-containing protein 2 OS=Homo sapiens OX=9606 GN=PCID2 PE=1 SV=2
Q8BFV2PCI domain-containing protein 2 OS=Mus musculus OX=10090 GN=Pcid2 PE=1 SV=1
Q2TBN6PCI domain-containing protein 2 OS=Bos taurus OX=9913 GN=PCID2 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF01399PCIPCI domainDomainInterproscan
PF01413C4C-terminal tandem repeated domain in type 4 procollagenDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000717DomainProteasome component (PCI) domainInterproscan
IPR036954Homologous_superfamilyCollagen IV, non-collagenous domain superfamilyInterproscan
IPR050149FamilyCollagen superfamilyInterproscan
IPR016187Homologous_superfamilyC-type lectin foldInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR001442DomainCollagen IV, non-collagenousInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24023COLLAGEN ALPHAInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005201Molecular Functionextracellular matrix structural constituentInterproscan
GO:0005581Cellular Componentcollagen trimerInterproscan
GO:0005604Cellular Componentbasement membraneInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0030020Molecular Functionextracellular matrix structural constituent conferring tensile strengthInterproscan
GO:0030198Biological Processextracellular matrix organizationInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K19719COL2A; collagen type II alpha-Glycosaminoglycan binding proteinsko00536deepkoala

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