Gene detail

Detailed information of aawi_s0027.g96.t1 in Acropora awi

Genomic Location: sc0000027_pilon:1337345...1346329
NR annotation: XP_029190635.1, CUGBP Elav-like family member 3-A isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aawi_s0027.g96.t1

GATATCGCCGGCTCAGTGGAAATGCATGACATAGTCGTGTCAGTCATTTGTGGTTTGCAAGGATTAAAATGGCTTCAGGTGGTGATGATTCCAGCGGAAACAATCGTGCAAATGAACCTGAAGAAGAAGAGTTGGCCGTCTTAAGGGATACAGAAGGTGTATTCCGTAATTTTATGATTCAGCGTTATCAAGACGAGACAGAGAGAAGAGAACAGAGCGGTGATATGAGCAGCTCTTCTGCTCGTCCTGATGCACTTGAAGAACTTCGTTCTTGTAGTGATGTACACCAGTTGTCGCAGAATGTACCGGTCGTTGTTCAACAGCTTTTAGAGATAAGCGATGAATTGGATGCTAAATACAAGGACCAGTTCAAGGATATGACTGATTCGTTAAGTCTTACTCCAGCAACGGCTTACGAAACTTTTGCCACAGTGGCTCGAAGGTTGTTTCGTTCTGGAATAACGTGGGGACGAGTTGTGGCTCTACTTTGTTTTAGTTATGAAATTGCTGTAACTGTCATCCACAGAGGTTTCAGTGGAAACTTTTTACGTAGAATAATTCGATTTGTGGTGGATTTTATCTTCAATGAGAGAATAGCTCGATGGATAGCTGAGCATGGCGGATGGGGATGTCCATCACCAATAGTTGTCAAGTTTGCAGATACAGAGAAAGAAAAACTTCAGAAAAAAATGCAGCAAATGGTTGCTTTGGGTGGAATGGGAGTGAATATTGGTTTAGGAATGGGCTTCCCTTATTCCTTTCAACATGCAAATTATAATGCAGCCTGTCAACAGCTTCTTCAACAACAAGTTAACCTTCCTACAGGATCCTTACCATCTGGCTTCAATGTCATTCCAGGAGTTACAGGGCCTGTTACCCCGGGGACAATGGGTGCTCTGGTAGCTGCATCAGTTCTTGCCACCCAACAACAACAGCAGCATCAAGCAGTACAACAGGCGTCATCACAAAATAACTTAATAGGGGGAACGGGTGCTTTGATTAACAGCAATGCTGTCTCTTCCGGTAATGCCACCAATACCTCGTCAATGATTGGAGTGCAAGGTGTTCCAGGAATGACTGGAATTGGTATGAATGTTTCAGGTATGGGTGTAGGCAGTTTAGGTTCTGTGGGAGGTGGAACTCTTGGCATGGGAATTCCTGGCCTCAGCAATATGACAGGTGTAACAAGTGTTGGTGGAAACTTACAAACTGGAGATGCACTCACTCAGGCTTATTCTGGAATACAACAATATAATGCAACATTTCCTGGTGTTTATGGCCAAGCCATATTCCAACAGCAACAATTACAAAGACAGCCTCAAAAGGAAGGTCCTGAGGGTTCTAATTTATTTATTTATCACTTACCTCAAGAGTTTACTGATGCTGACTTGATGCAGACATTTCTACCATTTGGCACTGTCTTGAGTGCAAAAGTTTTTATAGACAAAGCTACAAATCTTAGCAAATGTTTTGGTTTTGTTAGTTATGATAATGCCCGATCAGCTCAAGATGCCATACAGGCCATGCATGGTTTTCAGATAGGGACTAAGAGGCTAAAAGTGCAGCTTAAGAGACCAAAAGATGCAAACAGACCCTACTAGTCTCTGATCACTCGACTTTGTACGTTTATTCGTCGTCATGGCGATGACCTGTTGCACATGTGCTTGTGTGTGTACCACAGTTGGTGACGTCACTTGTGCTATTTTCCGTCACTGTTGGTGTTGGGATGCAGTAAAATGTCGTTGTCAAGTTGCATTGCGTGATTGTTAGTTATCAGTATACATGTATATTATCAGTGCATGTTGTCTTGCGGGTATTGTAAGCAAGCCCTTTTGAGTGTTTTATTTGTCTTGTGGCCGGTACATGTCAGGCAAGCTCACTGTTTTCTATTTACAGAACATAGTTCATGTTGGTGTTGAAGTTACGCTAGTGTGTTGATAGTACAGATTTTGTTTTGGTTTTGTAAAAACCCATTATGTAGTTGTAGATTCATCTTGTAGGTTGCATTGGTGCTGGCCTGACTCTCAATAAAAGACATTTATTACA

Protein

Uniprot

Uniprot term	Description
Q28HE9	CUGBP Elav-like family member 1 OS=Xenopus tropicalis OX=8364 GN=celf1 PE=2 SV=1
Q5F3T7	CUGBP Elav-like family member 1 OS=Gallus gallus OX=9031 GN=CELF1 PE=1 SV=2
Q91579	CUGBP Elav-like family member 3-A OS=Xenopus laevis OX=8355 GN=tnrc4-a PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00452	Bcl-2	Apoptosis regulator proteins, Bcl-2 family	Family	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036834	Homologous_superfamily	Bcl-2-like superfamily	Interproscan
IPR026298	Family	Bcl-2 family	Interproscan
IPR046371	Domain	Bcl-2, Bcl-2 homology region 1-3	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR002475	Family	Bcl2-like	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR020717	Conserved_site	Apoptosis regulator, Bcl-2, BH1 motif, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11256	BCL-2 RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0042981	Biological Process	regulation of apoptotic process	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005741	Cellular Component	mitochondrial outer membrane	Interproscan
GO:0008630	Biological Process	intrinsic apoptotic signaling pathway in response to DNA damage	Interproscan
GO:0042803	Molecular Function	protein homodimerization activity	Interproscan
GO:0046982	Molecular Function	protein heterodimerization activity	Interproscan
GO:0097192	Biological Process	extrinsic apoptotic signaling pathway in absence of ligand	Interproscan