Gene detail

Detailed information of aawi_s0030.g141.t1 in Acropora awi

Genomic Location: sc0000030_pilon:1959469...1968177
NR annotation: XP_044175461.1, TNF receptor-associated factor 6-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aawi_s0030.g141.t1

AAAATGATTTGTCATCAAACAAAATTAACATTATTTGCACAGAATCATTTCCAAGATTGCCCTCAATATCCTTTGTCTTGTGAGAAGTGCGGAAAAGAAAACATTCCAAGAAATGAGATGCAAGATCACAACGAGAAAGAGTGTCCAAGGGCGGAGCTCAAGGGAACTCGTGCAGCAGTCAATGACCATGTCAGTCATTTGATGGACGACCTCACAAAGAAATTCAGAGCATTGAAGATGGAGGAGCCAGGACACCAAGCACCTGAGAGTCGCTCTCGACGCACCAGGGGTGTGGTAGAAGCCCAAGAGCAGGCTAGTCAAGACGTGCTTCCCATGAATTTGGAGACATTGTTTCAAAGACAGCAAACGGAAATGGATGGATTGAGACCCCTTTTTAATGATATGATAGGCACGGTGAAGCGTTTCGAACGTCGCCTTAATGAGTCGTGCAAGAGAATGAAAACGCCGTTGCAAGAACTTACTATCAGGCTCAACCGTCGAGAAACGAGAGCGTTTGAGTTCGAAGGCCGTGTGTGCAATGGCGCTTACATCTGGAGGATTGAAAACTACCGACAGCGTCGCCAGGATGCCATCAACGGCATTGCTACTGCCGTACACAGCCCAGCCTTCTATACCAGCCTCTGTGGTTACAAGCTGTGCTTGCGTATCAACTTGAATGGCGTGGATAGTGGAGTTGGAAGATACATAGCTCTGTTTGTTCACATAATGCAGGGCGATTATGATAGCATCCTTGAGTGGCCATTTACCGGGAAGATCACCCTTACCATCTTGGACCAATCCGAGGGCACCGCATTTCGTCAGCACATCAGCGAGTCACTTATTACCAAGCCCAATCTGTTGGCCTTTCAGCGGCCAACAGCTCCGCGCAACTACAAGGGCTATGGCTACGTGGAGTTTGCTCCGATCGAGCACATCCGCGATCCTCAGTACATTAAAAACAATACCATGCTGGTTCGCATTCAGATTGATCACTGAAGAAGCATTTGCTCCAATTCAGCATTTATGGCCTCAAGCGCAGATGTGGTCGTATTTGTAGGGTTGATCGCCATGTCATCATAATAGTTCAGACTTTTGGACACCGTTTTGTTCAGGTTAGGATTAATAAGCAATTCATGTCATAGCCTTTTAAGTGAATGCTCAAGAACACAGGACATCATTTCAGCTAGCACAGTAACAAAAGATCATGATGCaataggccactttcgaattgtgcaaaaacaaaagggcagggtcgaggccgagaggactagtttgcgatttccttttaaaaaacaaagaaaaatgcaaaattgccctctcaacgtgactttgttcttttgttcttacacatttcgaaagtggcctattgGCGAATTGACGCAAGCCATGGTTTTCACGTTGGATAGATAGAAACCATGACTCGCGAATCATTTCAAACTGATGATAAAGAAAATGAGAAATTGCAGAAGATGGTTAAAAACCCATTTGGAGGGACGTTTAAAATCAACTTGGCACTTTAAATTGCCCAGCATACCTCGTGAGATAAGTTCGGCACCTCTATTAAGTTTGGCACAAGTGACGAGTAAGCCTTTTTCTTATCTTTCATAGATAACCCTCAAAAATTAGTTTAGTATGAAAATGCCACGTTGATTTCATGTTGAAGGCAAATTACCAATATTGAAGCCCCAAAATAAAAACGCAACAAATAAGGTCCTTTAGGCTCACGTGATAACCAGGACCCCAAAGTAGGGCTGGGGCTAACTAATACGCCGATCAGTTTGTTAACATACGCACCCTCCCATCCACCTAtcctgggaataaaccgcagaaacactgtattttattcccctgagcctggtgatgaggtctaccgtttacagctgaaatttaaaatatcgaaTTGCTAATTGCTTTGTGTTGATACGAATAACCCAGACAAATATCTTATGCTATTGAGTACTTACTTGAAGTTGACCTTGTTTTTATTGTgagagcggtggtagcgtagtggtgagagccggggttcgatttctaggctcggtctcatatgtgggttgagtttgttggt

Protein

Uniprot

Uniprot term	Description
Q3MV19	TNF receptor-associated factor 6-A OS=Xenopus laevis OX=8355 GN=traf6-a PE=1 SV=1
Q3ZCC3	TNF receptor-associated factor 6 OS=Bos taurus OX=9913 GN=TRAF6 PE=2 SV=1
B5DF45	TNF receptor-associated factor 6 OS=Rattus norvegicus OX=10116 GN=Traf6 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21355	TRAF-mep_MATH	TRAF/meprin, MATH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008974	Homologous_superfamily	TRAF-like	Interproscan
IPR002083	Domain	MATH/TRAF domain	Interproscan
IPR049342	Domain	TRAF1-6/MEP1A/B-like, MATH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0031663	Biological Process	lipopolysaccharide-mediated signaling pathway	Interproscan
GO:0032813	Molecular Function	tumor necrosis factor receptor superfamily binding	Interproscan
GO:0033209	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0045087	Biological Process	innate immune response	Interproscan
GO:0051092	Biological Process	positive regulation of NF-kappaB transcription factor activity	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0070534	Biological Process	protein K63-linked ubiquitination	Interproscan