Gene detail

Detailed information of aawi_s0038.g17.t1 in Acropora awi

Genomic Location: sc0000038_pilon:234366...238800
NR annotation: XP_029187088.2, GTP-binding protein YPT1-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aawi_s0038.g17.t1

GCTACTAAATGTAAACAGTATGTCCGGAAATGTGGATTTTGTCTTTAAGGTCCTCGTTTTGGGGGATAGTTCAGTCGGAAAATCGAGTCTAATACGGAGGTTCCATGCTGATGTGTTTGATCAAAAACTGCCCACAACCATAGGAGTCGATTTCTTCATTCATGACTTTGAAGTAGAGGGCAAGAAAGTAAAGCTTCAAATATGGGACACGGCTGGCGAAGAGCGATATCGTCAGGGTGGCTTGACCAGTTCATTTTACAGGGGTGCCCATGGAGCACTGATTGTGTTTTCTTTGACATCATTAAAGTCATTTGAAAATATGAAAAAACTCTGGGTGGATGAATTTCACCGGAAAAGTGGTTCAGATACAGTTACAATATTAGTGGGAAATAAACAAGACCTAGGGGATAAAAGAGAAGTCAAAGAGGAAGACATAAAGGAATTTGCCGAATTGAATTCCATGTGTTGGTTGGAAACGAGTGCCAAGGACTGTACTAATGTAATGGAAGCTTTTGACACATTGGCATACAAGCTTTGTGAGAGTCATGAACAATACTTATCATTGCCGTCAGAGACGAGTGGTCCTGGAAGTTTTACACTTCACGGTGCCTATGGCATGTCAGGTCAAGAACAATCCAGTGGATTAGGTTACTGTTGCAGCTGATTTTTTAGGAATAGTTTACAAAATATGCACATTTTTATTTGTATGaaatttctaatgtagtgcaggagcaaacattttcaacccacgtgcaatatcaagtctaaaattgaccctgagacacattggtggaaagcaagtcttctcaccattgtgcataatttagccacagaacgttgttatggattttTTAAAAGTGTCTTGTTATTCAGGCAAATGTTGATATAGGCTACCATGAGCTCCAAAGACAAATTGGAATAAGAAGATAATTATTACTGTCATACTTCTGTGACAATAGCCACGATTTGATCGTTGCTGTTTCAGGTAAATGCACCTTATGTTGCAGCTTGCATTCAATGTTTTTGTTTGTTGTTCTAGTTTGAATTTCCATTTGAGTAGCAAATCATTCAATTAACATGTAGAACTGCTGCATTAGCTGGTggttgggtggggtcaatatggactgatagcggctgcctggagcatctttacatgctgacatccgacctccgacctcataccacaaactctgaaataacaatgtaaagtggacacgtgtgttgtccactcaccttgtagagaGACCCATAATAGCCAAGGAAAGGTTAATTTATTTTTGGTTAAAACGTTTAACGCTGGATATTATTTTTTGTTCAAAACTCAAAGTATCTGACTTTTATTATTTGTGGTTTTCACTTTTAAATGCAGCCTTACTAGTGGTCCTGACATTTTCTCTTCAGTTTATAGTGTAAGTGGAGAATTGTAAAATTGTAGCATTTTACAACATTTTACCCTCTTAGAATTAATCAGTCTTGTATTCATTTTTTTCTAATGTCAGGTATCATTAATTTTGGAAGTTAGCACTTATAAATTAATTTTGTACTTTTTCATAATTATTCTGAACTAAGATAGTTTACTTTTATTTCTTAAATTAGGGTTAAGATTACCAAATGAAACTTGTATTACCCTAACCATTCTAACCAAGAATAAAGACATGTGCAACTTGCATAATCTTTTTTTTTTTGTAACCtttaagatgatttccgcacaacatttgagcaataatggcaaaaattaagttaccaaaaaaacctcttagcatggtattattttgaataaaggcaagaagatcctatcgcgatttaagctctcaagctgaccccgcgagagaaaattgaacttagttatccacatttcagttaaaaagtatgttacgtgttagttgaaaacacaataacactcgctattagaattcttacaaagtttgacattaaatttctcgagaatgcttgaggatttcattgcggggtcacttagagaactgaattacaatgagatttttaaatagcattcaagaagttcccgtgctgtgagtagatttttggtaaataatttttgcaagtattgctggaactttgaacAGAATCTGTCTTAATTATTCCACAGAGATTGCAACAATCTTCTTATGATAACTTCTACATTTTAATGGTGGTCCTCTATTATTACTTTTCTTGCTAGGATCAACATAAATGAAATTAGGGCAAACTTATTTGATCTTAAAGACATAGAGGAAGCAGTGTGGCTGGGTGGTCAGGGCATCGGATTTGAAATCTG

Protein

Uniprot

Uniprot term	Description
P01123	GTP-binding protein YPT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YPT1 PE=1 SV=2
Q9SMQ6	Ras-related protein RABA4b OS=Arabidopsis thaliana OX=3702 GN=RABA4B PE=1 SV=1
P11620	GTP-binding protein ypt1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ypt1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806	Family	Small GTPase	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR050227	Family	Ras-related protein Rab	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47977	RAS-RELATED PROTEIN RAB	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan