Gene detail

Detailed information of aawi_s0050.g139.t1 in Acropora awi

Genomic Location: sc0000050_pilon:1593064...1599416
NR annotation: XP_015759705.1, PREDICTED: carbonic anhydrase 2-like [Acropora digitifera]
Species abbreviation AAWI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

aawi_s0050.g139.t1

AGTGTTCTTCGAGATCGCTTCGACCGCTCATTAAAACTTCATCGAGCAACTTCACGTTACATAGTTCGAGATATCTTTTTCTGGCGATCGCAGCGATCCTTACACTCAGAAATAACTACATTTTCTGATTCCTCGTTGTTTTAATATTTTAAAACTATTGCAAGAAGCATCGTAAAAGCATTTTCAAGTTATCCCAAGAACTTCATTAACAAGCCAAAAAGTCATCACTATGAATAAATTCCTTGTCGCAGTACTTCTTTGCATATCTTGCGCATCATTTTCCATTGCTCAATGGAGTTACAATCCAAATGCTGTAGATGGTCCGCAAAACTGGAAGGAAGATTGCAGTACCGGAAAAAGACAATCACCAATTGATATAGAAACAGCGAAAACAGTTATGGACAAAGAGCTGGGTACCTTCACACTGGTAAACTACAACAAGACGCTTAACAAGACTTTCAGGGCAACCAACAATGGCCACGCTCTAGAAATGGGCTTCCCTGGCAGAGCATACAACGTGAGCGGTGGAGGACTCAATGGAGTTTATACAACAGTCCAGTTTCACTTTCATTGGGGAGCAAATAACACCGTTGGATCTGAACACATTGTTAATGGAAAGGAATATGCAGCAGAGTTACACTTCGTCAGCTTCAACACGAAATATGCCAACCTTGCTGAAGCAGTTGACAAACCTGATGGTCTAGCAGTTCTTGGACTTTTGATTGAGGTTGGAGAACATAATAATAGTGCATTCTCATTCCTGGAAGTTGCCAACAAACTTGTCGAGCCTTTTTCATTAGTGAATGACGTTCCAGCCTTTACGTTCGAGCACTTACTGCCTGACGACAAAACCAAGTTCTTCCGGTACAATGGTTCACTAACAACCCCAACTTGTCTGGAATCTGTTACTTGGACGGTTTTCAACGACCATGTCTTCATCTCGCAATACCAGATGAATCTTCTGCGACTTCTGAAAAAGAACGGGACCTTAGCAGAGTTCGGCAATTACCGTCCAGTGCAGCCACTTTACAACCGAATCGTCAAATCAAGTTTCCCAGTCTCTGAGGACCACACATCACCAAGCCCCTCACCTTGCGCTGTTACAAAGacagtcacagtcactgttacagaaaccgtcacagacaATGGCACTAAGGAACCTACAGTAGCAATGGATTCTGGAGGCGTCTCTGCCGTTAGTATGACCGTTCTCCTGTTCTTGTCAACGTTGTCTGTCGCCGTTTTCCTACTTTAATTAACTATCACATGCCAACCTGGAAGTAAGTAGTTCGCCGCATCCCATTCCCGTCCCCAGAGCTGATGGTTTTTGCCAACTCCTTGTGATGAAATGTGCGCTGAGGAACCTGCGCAAAAGAAAAAACCAAGCCCTGGGGTCGGAAATGACCTGACCCTTCTCTGGATCATGCACAGTCCGAGGAATAAGCATCTTTCACATTTCAGAACACACTTCTCAGAATTCTCCGTGCTAGCCACGTTACCATTACCATTGCCATACAACAGCGATGATGATCATGGAACAAACGTGCTCCGAGTGTTCGAAGTTACTCTTGTTTCTTTATTGTTGAATAATATCCTTCGCGAAGAGTTATCGCAAACTCGAATTTACTGCTTTCAGCAGTTTTCGCCTAATATAAACTGGAAATTCTCTGTGTTGAATTTTGAATGTGCACAGTTAACGATACTTGTTCCTCTGGCTGAAATAATAGCTGTTAAACTGTTACTGACAACTGAAGGTAATATATAAGCTCGTTAACTCTTAATGTAACAGAATCTAGAAAGCAGCAATTGTGTTATGGCGTAGTAAAAAATATCACCTGCTTTAAAGGAACTTTAACGGAAGCAAATACGAAACCATTAGTGACTTTGTTTATGCGCGCTTTTCCGCGCTTGGCAGAAGTTTCAAGGTTTCGCTGAGTTCTGTATAGCTCACTGTGGTATAATCCACTTACTAGCTAGAAAAGGACATCTTGGTTCCTCTAATTTCTAATTAAGCATGAAAATTGCATGTTGGGTTCAACCATATTGTGATTCAATCAACTTTTGACTTCACAGTAAAGATATGTCTCTCATTGTGTAAATAAGTCGTAATTTAGTTCAACAACAGAAGAGACCCTACGGACTTTTTTTAATTTTTCAAACTTTTGATTTTCAACTCGCAAAGCTAATATTTTTAGATACATCTTTTATCGGCAATTCAGAAGTCTTGGTAAGACTCTACTGTGCACGGCCGGGACTAGCCGAAGTGACCTGGAAAGTAGCCACAATGACCTGTATTGTGAGTTCTTGTTAATACTTGAAAGAACATTTTAACTTTAGGAATTGGGATTTATTGATAAATTGTGGGGGATTCGAGTGATGTAAATAAGGACAAAAGTTATTTACCCTAATTTGATAACATTTTTTGCGAATTTACGAATAAATGCTATTCAATGTAAGAGTAAAAGTTTCAATAAACTGGTATTTTTTCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P00920	Carbonic anhydrase 2 OS=Mus musculus OX=10090 GN=Ca2 PE=1 SV=4
P00921	Carbonic anhydrase 2 OS=Bos taurus OX=9913 GN=CA2 PE=1 SV=3
P00918	Carbonic anhydrase 2 OS=Homo sapiens OX=9606 GN=CA2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000243 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00194 all species →	Carb_anhydrase	Eukaryotic-type carbonic anhydrase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001148 all species →	Domain	Alpha carbonic anhydrase domain	Interproscan
IPR036398 all species →	Homologous_superfamily	Alpha carbonic anhydrase domain superfamily	Interproscan
IPR018338 all species →	Conserved_site	Carbonic anhydrase, alpha-class, conserved site	Interproscan
IPR023561 all species →	Family	Carbonic anhydrase, alpha-class	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18952 all species →	CARBONIC ANHYDRASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004089 all species →	Molecular Function	carbonate dehydratase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006730 all species →	Biological Process	one-carbon metabolic process	Interproscan
GO:0016836 all species →	Molecular Function	hydro-lyase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01672	CA; carbonic anhydrase	EC:4.2.1.1	Nitrogen metabolism	ko00910	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.