Gene detail

Detailed information of aawi_s0056.g4.t2 in Acropora awi

Genomic Location: sc0000056_pilon:130836...162617
NR annotation: XP_044167471.1, fibroblast growth factor receptor 3-like [Acropora millepora]
Species Acropora awi · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

aawi_s0056.g4.t2

ATGCTCGGGGCTCTAGTGGTATTTTTCACCTGTATCTTGCATTGGTCTGAGACTGCAAATATCACTAGATTTATCAGTAAATCGCCTAGTCCATCGTATGCAGTGGAAGGGAAGAACTTCATTCTTGAGTGGAACTACATTCTTAATGGTACAATTGGCTCTGCACAGTATGTCATTGTTAAGGGTCATGGAAGTGACTCACTTATTGGGCGGAGGTTTGGGCCTGGCTGCGTAACGGTTCAGGGAGGGTTTCAAGCAAGGTTCAGGGCAAACGTGACGGACACCAGAGCACAGCTGACAATTCTTGCAGTGCAAAGATCAGATGAAGGAAGTTACAAATTGACTATTCTTCCAACTGGTGCTGGTTCTATTTCGGAGCTAGTGACTCTTGTTGTCAATTTTCCACCAAGAAACATGAAAATAACTGGAAGCACGTCTGTCATAGAAGGAGGGAATGTAAACCTGAATTGCTCAGCTAAGGGCAAACCGAAACCACGTATCACATGGACAAGACTCTCTGACAACAGTGTTGTCACCATGCCATTACTTAACATCAACAGACATGATGCGAGGGACTACAGATGCACAGCAGAGAATGGTGTCGGAACCCCTTCTACTAGAAGTGTTACCATTGATGTGCAATTTCAACCAAGCATCGTTGGAATAACTGGAAACACGTCGGTCATAGAAGGAGGGAATGTGAACCTGAATTGCTCAGCTAAGGGTAAACCGAAACCACGTATCACATGGACAAGACTCTATGATAACAGCGTTGTCACCATGCCATTAATTAACATCAACAGACATGATGCAGGGGACTACAGATGCACAGCAGAGAATGGTGTCGGAACGCCTTCTACTGGAAGTGTTACCATTGATGTGCAATATGCTCCTGAAGGAGTCACTTTGACCACTAACTTGTCAAGAAAGCACAATATCTGTGTAGGCATGGTGGCAAATTTTACCTGCGTTGTTGAAGCCTCCAACCCTGCAGTGGAAACCCTCACATTGCTTGGGACTGGAAGTGTGGTTTTAAACAAGAGAAGCTCTGGAGCTTGGATTAGGACACTTACCACTGGTGGCAATGCAACATACAAATGTATGGCAAGCAACTCTGTGGGCGTCACTTGCAGCGATTACATCAATTTCATGGTTGAAGTTCCTGCATCTATTACCAACATCAGTAACAGCATCGTTGTCAAAGAAGGTCAAAATGTGACTCTTGTTTGCCATGGGTTTGGACTCCCGGCACCAAGTATTACCTGGTGTGATGCCCAGAATAAGGTGATAAAAGATGAAAACATTTGGCAACTGCATAACATCAACAGGAATATGGCCGGGCAATACAGCTGCAAGGCAAGCAATGCTTGTGGAAATGATAGCCAAAAAGTTGATATTGATGTGCAATTTCCACCAAGCATCATTGAAATAACTGGAAACACGTCGGTCGTAGAAGGAGGGAATGTGAACCTGAATTGCTCAGCTAAGGGTAAACCGAAACCACGTATCACATGGACAAGACTCTCTAATAACAGTAATGTCACCATGCCATTAAATAACATCAGCAGACATGATGCAGGGGACTACAGATGCACAGCAGAGAATGGTGTCGGAACCGCTTCTACTAGAGGTGTTACCATTGATGTGCGATATCCTGTCGAGGCTACCGGTAGAGGAGAAAATGCCTTTGTGGCTGGAGGGGATGTGAAAACGTTGACATGCCCAGTTGATGGGAACCCGAAGCCCAACATCGAATGGTATATTGAAAAAAGTGGGAGAAAGCTTTCCAGTGGAAAACGATACAAAACAGGAGAAAGTGGGTGCTACACTTGTGTTGCATGGAGCTCTCTTGGCACACCAGTCAATATCACACAGTGCTTGACTGTTGGACAAGAAGTTCGTGCCATCCTGAAACTAATAACAAATTTTAAACAAGCATTCGAAGATTTAAACAGCGCTTCTTCAAAACAATTTGTTGCAAAGGTTGAGGAAGAGATAGACAAAGTATACACCAATATGCCAGAGTACATCAAAACTAAAGTAACAAAGCTGAGGCGTGGGAGTGTAATTGTACACTTCATCCTGTACTTTAAGACTGCTGTGACCCCAGAGAAGGGAATTGAAAACCTGAAGGTTGCTATTTCCGCCAATGACACTATTGGGGATTTCCAAGTCGAGGAATTGGTCATTTACACCAGAAAGAGTACCAACTCCACTACAACAACAGAAATCAAATGCAATTGCTCCGATAATGAGACCTTATTGTTGGTCATAATAGCAGTTCTTGGTATAGTCATTTTGGTTCTTATTGCAGTTACAATCTGGCAACAAAGAAAGTTAAGGTCCATTGGACACAAAAGTTGGTCGTACGGGGTGGCGCAGGAAAGAGATGCTGGCGTTTATGACAACGAATTTGAAATGAAAGATGTGAATGTCACTTCCCTTGGACCAAAGAATTCCTTACAACAACAGATCCCCGATGAGCTCGTCTATACGCCTTTACAGGGCATCTGTCCAACTGGAGAAGGATCTAATAGCCCTGTAAGCCCTGTTCCAAGTGTTGAATATGCACCACTTGATCGAAAAACACGTTCATGGGAAGTAGAACGAAATGACGTGAAAGTAGAGAAGATCATTCGTAAAGGAGCTTTTGGCCAGGTTGCCAAAGGAACGGCAAGGAACCTTCCATTTAGGTCTGCAGCATCAAATGTGGCCATTAAAATGGTGAAAGctaatgctgctgaatcagataagcgagacttgaaatcagaactggaactgatgaagactcttaagccgcatccacatgtcatcaaactactgggctgtgtcactgagtctgagcccttgttggtgttgatcgagtatgtcccgtatgatctctgtggttacctgaggaagagccgaggattaaaagatactcgctatatagacccggatatcaaacctaaaactagtctgacgtcacaacaactaatgaaatttgcttggcaaattgctgatggaatgagttacttatcgtcgagaaagattgttcaccgggatcttgctgcacgtaatgttttggttggagaaggagaaaactgtaaaataacagactttggaatggccagagttgtacaagaggaaaatatctatgagcaaaagacgaagggttggctaccagtgaagtggacagcatatgaatctctcttatatggacaatacacaacaaaaagtgatgtatggagttatggagttgttctttacgaaatttCCACCATAGGTGGCTTGCCATATCCACGGATTGAAGGCAGGGAAATAGCAAACTTGCTTCAGCAGGGATACAGGATGCCGAAACCAAAGCACGTTAACGATGACTTGTATCAAATCATGATGAAATGCTGGCAAAGTAAACCAGAAGCCAGACCATCATTCTGTGATTTAACACAGCAGCTTGAACGATTGGAAAACCAGCACAAGACGTTGATTAACGTGCATATCTACGACAACGCACCGTACGGGAACCCCGAGGATTTGAATGCATGA

Transcript

aawi_s0056.g4.t2

CACGTTTCAAACTTGAGGACGTTACAGCAAAGCGACGATGCTCGGGGCTCTAGTGGTATTTTTCACCTGTATCTTGCATTGGTCTGAGACTGCAAATATCACTAGATTTATCAGTAAATCGCCTAGTCCATCGTATGCAGTGGAAGGGAAGAACTTCATTCTTGAGTGGAACTACATTCTTAATGGTACAATTGGCTCTGCACAGTATGTCATTGTTAAGGGTCATGGAAGTGACTCACTTATTGGGCGGAGGTTTGGGCCTGGCTGCGTAACGGTTCAGGGAGGGTTTCAAGCAAGGTTCAGGGCAAACGTGACGGACACCAGAGCACAGCTGACAATTCTTGCAGTGCAAAGATCAGATGAAGGAAGTTACAAATTGACTATTCTTCCAACTGGTGCTGGTTCTATTTCGGAGCTAGTGACTCTTGTTGTCAATTTTCCACCAAGAAACATGAAAATAACTGGAAGCACGTCTGTCATAGAAGGAGGGAATGTAAACCTGAATTGCTCAGCTAAGGGCAAACCGAAACCACGTATCACATGGACAAGACTCTCTGACAACAGTGTTGTCACCATGCCATTACTTAACATCAACAGACATGATGCGAGGGACTACAGATGCACAGCAGAGAATGGTGTCGGAACCCCTTCTACTAGAAGTGTTACCATTGATGTGCAATTTCAACCAAGCATCGTTGGAATAACTGGAAACACGTCGGTCATAGAAGGAGGGAATGTGAACCTGAATTGCTCAGCTAAGGGTAAACCGAAACCACGTATCACATGGACAAGACTCTATGATAACAGCGTTGTCACCATGCCATTAATTAACATCAACAGACATGATGCAGGGGACTACAGATGCACAGCAGAGAATGGTGTCGGAACGCCTTCTACTGGAAGTGTTACCATTGATGTGCAATATGCTCCTGAAGGAGTCACTTTGACCACTAACTTGTCAAGAAAGCACAATATCTGTGTAGGCATGGTGGCAAATTTTACCTGCGTTGTTGAAGCCTCCAACCCTGCAGTGGAAACCCTCACATTGCTTGGGACTGGAAGTGTGGTTTTAAACAAGAGAAGCTCTGGAGCTTGGATTAGGACACTTACCACTGGTGGCAATGCAACATACAAATGTATGGCAAGCAACTCTGTGGGCGTCACTTGCAGCGATTACATCAATTTCATGGTTGAAGTTCCTGCATCTATTACCAACATCAGTAACAGCATCGTTGTCAAAGAAGGTCAAAATGTGACTCTTGTTTGCCATGGGTTTGGACTCCCGGCACCAAGTATTACCTGGTGTGATGCCCAGAATAAGGTGATAAAAGATGAAAACATTTGGCAACTGCATAACATCAACAGGAATATGGCCGGGCAATACAGCTGCAAGGCAAGCAATGCTTGTGGAAATGATAGCCAAAAAGTTGATATTGATGTGCAATTTCCACCAAGCATCATTGAAATAACTGGAAACACGTCGGTCGTAGAAGGAGGGAATGTGAACCTGAATTGCTCAGCTAAGGGTAAACCGAAACCACGTATCACATGGACAAGACTCTCTAATAACAGTAATGTCACCATGCCATTAAATAACATCAGCAGACATGATGCAGGGGACTACAGATGCACAGCAGAGAATGGTGTCGGAACCGCTTCTACTAGAGGTGTTACCATTGATGTGCGATATCCTGTCGAGGCTACCGGTAGAGGAGAAAATGCCTTTGTGGCTGGAGGGGATGTGAAAACGTTGACATGCCCAGTTGATGGGAACCCGAAGCCCAACATCGAATGGTATATTGAAAAAAGTGGGAGAAAGCTTTCCAGTGGAAAACGATACAAAACAGGAGAAAGTGGGTGCTACACTTGTGTTGCATGGAGCTCTCTTGGCACACCAGTCAATATCACACAGTGCTTGACTGTTGGACAAGAAGTTCGTGCCATCCTGAAACTAATAACAAATTTTAAACAAGCATTCGAAGATTTAAACAGCGCTTCTTCAAAACAATTTGTTGCAAAGGTTGAGGAAGAGATAGACAAAGTATACACCAATATGCCAGAGTACATCAAAACTAAAGTAACAAAGCTGAGGCGTGGGAGTGTAATTGTACACTTCATCCTGTACTTTAAGACTGCTGTGACCCCAGAGAAGGGAATTGAAAACCTGAAGGTTGCTATTTCCGCCAATGACACTATTGGGGATTTCCAAGTCGAGGAATTGGTCATTTACACCAGAAAGAGTACCAACTCCACTACAACAACAGAAATCAAATGCAATTGCTCCGATAATGAGACCTTATTGTTGGTCATAATAGCAGTTCTTGGTATAGTCATTTTGGTTCTTATTGCAGTTACAATCTGGCAACAAAGAAAGTTAAGGTCCATTGGACACAAAAGTTGGTCGTACGGGGTGGCGCAGGAAAGAGATGCTGGCGTTTATGACAACGAATTTGAAATGAAAGATGTGAATGTCACTTCCCTTGGACCAAAGAATTCCTTACAACAACAGATCCCCGATGAGCTCGTCTATACGCCTTTACAGGGCATCTGTCCAACTGGAGAAGGATCTAATAGCCCTGTAAGCCCTGTTCCAAGTGTTGAATATGCACCACTTGATCGAAAAACACGTTCATGGGAAGTAGAACGAAATGACGTGAAAGTAGAGAAGATCATTCGTAAAGGAGCTTTTGGCCAGGTTGCCAAAGGAACGGCAAGGAACCTTCCATTTAGGTCTGCAGCATCAAATGTGGCCATTAAAATGGTGAAAGctaatgctgctgaatcagataagcgagacttgaaatcagaactggaactgatgaagactcttaagccgcatccacatgtcatcaaactactgggctgtgtcactgagtctgagcccttgttggtgttgatcgagtatgtcccgtatgatctctgtggttacctgaggaagagccgaggattaaaagatactcgctatatagacccggatatcaaacctaaaactagtctgacgtcacaacaactaatgaaatttgcttggcaaattgctgatggaatgagttacttatcgtcgagaaagattgttcaccgggatcttgctgcacgtaatgttttggttggagaaggagaaaactgtaaaataacagactttggaatggccagagttgtacaagaggaaaatatctatgagcaaaagacgaagggttggctaccagtgaagtggacagcatatgaatctctcttatatggacaatacacaacaaaaagtgatgtatggagttatggagttgttctttacgaaatttCCACCATAGGTGGCTTGCCATATCCACGGATTGAAGGCAGGGAAATAGCAAACTTGCTTCAGCAGGGATACAGGATGCCGAAACCAAAGCACGTTAACGATGACTTGTATCAAATCATGATGAAATGCTGGCAAAGTAAACCAGAAGCCAGACCATCATTCTGTGATTTAACACAGCAGCTTGAACGATTGGAAAACCAGCACAAGACGTTGATTAACGTGCATATCTACGACAACGCACCGTACGGGAACCCCGAGGATTTGAATGCATGACATTGTTGTTTCTGCAATAACATCCCACATAAATTTTCCACTCTGGCATATATCTTTCATTTAGAATGTACTAGTGTAAACGTTCTAACGCAATAAGTTGCAATTTCTGTACCAAAATAAATAGGGTATAATTTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P35546	Proto-oncogene tyrosine-protein kinase receptor Ret OS=Mus musculus OX=10090 GN=Ret PE=1 SV=2
G3V9H8	Proto-oncogene tyrosine-protein kinase receptor Ret OS=Rattus norvegicus OX=10116 GN=Ret PE=1 SV=1
P07949	Proto-oncogene tyrosine-protein kinase receptor Ret OS=Homo sapiens OX=9606 GN=RET PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000023 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan
PF01390 all species →	SEA	SEA domain	Family	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR000082 all species →	Domain	SEA domain	Interproscan
IPR008266 all species →	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR050122 all species →	Family	Receptor Tyrosine Kinase	Interproscan
IPR020635 all species →	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR036364 all species →	Homologous_superfamily	SEA domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24416 all species →	TYROSINE-PROTEIN KINASE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004714 all species →	Molecular Function	transmembrane receptor protein tyrosine kinase activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007169 all species →	Biological Process	cell surface receptor protein tyrosine kinase signaling pathway	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0033674 all species →	Biological Process	positive regulation of kinase activity	Interproscan
GO:0043235 all species →	Cellular Component	receptor complex	Interproscan
GO:0004713 all species →	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for aawi_s0056.g4.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.