Gene detail

Detailed information of aawi_s0061.g86.t2 in Acropora awi

Genomic Location: sc0000061_pilon:1191549...1248867
NR annotation: XP_015773655.1, PREDICTED: collagen alpha-1(I) chain-like [Acropora digitifera]
Species Acropora awi · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

aawi_s0061.g86.t2

ATGAGGTTCTTTGACATTAGAATAGCGTTTTCTTTATGCCTCGTGCTGTGGAGCTGCAATACAGAAGCTCAACATGGTGGTATGGGTGGAGAAAATGTCGAAGTTGACCCGGCATTAAAAGGCGAACAAGGACCTAAAGGATACAAAGGTGGCTCAGGAGTATCAGGAAATCGTGGACCAAGAGGAGACCAGGGTGAACCAGGAGTTAATGGAAGAGATGGACCTCCAGGACCACGAGGTCCTAATGGACCACGGGGACCCATCGGCCCTCCTGGTCCACCTGGACGGCCCATGATCACAATCATTGGTGTGCCTGGGGTGCCGGGTAAACGTGGAGAGAGAGGTTCAGCTGGAAGAGATGGTCCACCGGGTCTTTCTGGAGAGCCTGGTCCTCCTGGACCACCCGGAACGCGTGGGTCACCTGGAGCTCAAGGTCCCCCAGGTGAACCTGGTTTGGTGGGCAGATCTGGACAAAATGGAACAAAAGGTCAACCTGGAATGCAAGGCCCTCCTGGACCAAGGGGTCCTCCTGGGGCAAAAGGAGCAGATGGGGTGAAGGGGGCTGATGGTGTCAAGGGGGACATGGGTAGAAGGGGACTTAAAGGTCCTAAAGGTCTTAAAGGGCCCGGAGGACTCAAGGGTGACAAGGGATCCCGCGGTGAAGATGGTAGAAATGGAACAAATaagataactcaagatgtgcttgcgagatgttcggtcatcgtgtctgatcatgatGGAGACCCAGGTGACATAGGAGAAACGGGGCCAGAGGGAGCCCCTGGTAGACCAGGCAATCAGGGAGCCAAAGGAGGTTCAGGGCCACAGGGTCAACAGGGACCTCCTGGTGTTCCAGGCCCTGCAGGTATACCTGGAGGTCCTGGCGAGAAAGGCTCTCCTGGAGACCCTGGTGTACAAGGAGAACGTGGAAAACAGGGTTTGCCAGGACAAAGAGGAGCTCCAGGAAGTCAAGGAAATCCTGGTGCAGATGGATCCCCTGGATTGGATGGAACTGAAGGCCAGAAGGGAGCAGAGGGTGACCCAGGTCCTATGGGTCCTCAAGGATTACCAGGTCCTCCCGGACGCCCGGGCAAGGCTGGTGAGGATGGCAGAAATGGACCACCTGGCTCACCGGGTGATTCTGGACCACCTGGGCCGCCTGGATTACCTGGTCGTACTGGCTCAAGGGGAGATCCTGGCCAAGTAGGAGCCCCAGGTCCAAGTGGACCTCAAGGGAGACAAGGAAGACGAGGGAAGCAAGGTCGGATGGGAGCTCCTGGAGAACAAGGTGCCCCGGGTGATGAAGGACCTCAAGGCCCTATTGGAACAAGTGGATCTCCTGGCGCTGATGGTAGACAAGGTGAACCAGGGTTTAATGGCAAAGATGGACTAAAAGGAGAAAGGGGACCTGATGGTGTACCTGGTGAAGATGGGTTTCCTGGTCCAAGAGGTTCCCCTGGTGCCCCAGGAGCCCCTGGAAGGGATGGCAAAAATGGAGATAAGGGTGCTAGAGGAAAAGATGGTGAACCTGGATCAGCAGGGCCAGCGGGATCCCCAGGACCAAGTGGTGGTATGGGAATGACTGGAAAGAAAGGAGAGAGGGGTTCCACCGGTAAGCCAGGAATCCCAGGGCTGCCTGGACCTAGGGGTTCCCAGGGTGCACGTGGAGACTTTGGAGAACGCGGTGAGACTGGACAACCAGGAACTGATGGTGCAGCTGGTCAAAGAGGTTTACCAGGCCCTGTTGGGATCCCAGGTTTAATGGGTGCTCAGGGAGAGCCTGGTTCACCTGGGGCACCAGGTGCTGATGGAAAGAAGGGTCCACCAGGTGAAAGCGGACAAGATGGACTTGCAGGAGACCCAGGTTCTGTTGGACCACAAGGTGAGCCCGGTCCTCAAGGAGAAACAGGCATCAAGGGTGAAAAAGGAAAACCAGGAGAGAATGGTGCAGATGGAACTCCAGGTGAGCGCGGTGAACGAGGGCCAACAGGACCACAGGGCAACGTAGGGGCATCGGGTCCTCCTGGTCTGTCAGGTTCCTCAGGTCCTGTCGGAAGCAAAGGAGATCAAGGTGATCCAGGACCCATTGGACCACAAGGAAACCCAGGAAGGGACGGCAAACGTGGCTATTCTGGTACACCTGGTTCACCAGGGCCACAGGGAGATCAAGGACCAAGGGGTGCCCCTGGACAATTTGGAACACCTGGTGCCCCTGGAGACTCCGGTCTTGCTGGTCCCCGTGGACCACCTGGTGCTTCAGGACCTTCAGGAGACAATGGGGCAGACGGGGCAACAGGACCACCTGGCCAACCGGGACCTATGGGAGACATTGGCGAACAGGGTGCTCCTGGAGATATGGGTGATGTTGGACCTGAGGGAGATGTTGGACCACTTGGACCACCTGGTCCACAGGGAGAAATTGGAGCAACTGGTTCCATTGGAGCTATAGGTGTGTCTGGCCCTTCAGGTGAAAATGGAGCCCCTGGGCCCATTGGTTTGCCTGGACCAATGGGACCTCCAGGCACAGATGGAGAGAGGGGACTGGATGGAGCAAAGGGTGACCCTGGTGAACCTGGATCTGATGGCAAGAGAGGCATGACTGGGCAGCCTGGTCTTGATGGAAGACCAGGCCAAAGAGGCAAATCAGGAGACCCTGGTAAACAAGGACCCCCAGGTCCACCCGGAGCACCTGGATCGAGAGGAGACGTAGGCCCACCTGGTAGCGCTGGACAGAGAGGACCACAGGGACCTCCGGGTCGCAAAGGACCAAGGGGAAGGGCTGGAGCAGGGGCGGAACCTGGAAACGATGGCCCTCCTGGTGACACCGGACCCGACGGCCCACCTGGCCCGCCTGGGAAACCTGGATTCCGTGGCCTTGACGGAACACCCGGTCTGCCTGGAACCCCTGGTAACCCTGGGGTACGCGGGAGCAAGGGTGCGAAAGGATTTCCTGGAGGGGGTGGGAGTAATGGTGACCAAGGACCGAGAGGAGGACCTGGACCGAGAGGAACCCCAGGAGACCGCGGACCGAAAGGAAATGAGGGTATCCGTGGAGAAAATGGTGCCGATGGCCTCCGAGGACTGCCAGGCAACGGTGGAGCTGAAGGTGCAAAAGGTGCGCGTGGATCTCAGGGCACCAGGGGAGAAAAGGGTCAGCGAGGTGTTGCGGGATCGCTTGGTCGTCAAGGGTTACGAGGGAGAGTGGGACCAGCTGGTGAACCAGGGTTTAACGGCCCACCAGGTCCCAAGGGAGAAAAGGGAAATGATGGTCCCCAGGGAGAAACGGGTCCAGATGGATTCACTGGCTTGCCGGGTCCATTGGGTGATAAGGGTTTGAAAGGTCGACCGGGTCCCCGCGGATTTTCGGGTACTCCAGGTCTACCGGGACCACCTGGACCTCCAGGCCAACGCGGAGAAGATGGTTACCCTGCGTCACCATTGCAACGCATATCTCGGCGTGACCCAAGTAAAGGACCAGGAAGCGTTGAGCCAGGACCCGATGAGCCAGGACCCGTTGAGCCAGGACCCGTTGAGCCAGGAGAGGGATTCAACAGAAGACGACGATCTGTTGAGGACATGGATGACCAAGTCGCAGACCGTGTTGCGTTTCTGGCTGAAAAGATGTTTCTGCTCGAGCGCAGAGCCAATTCGTCTTTGTTTCCAGCAAAGACTTGTCGTGATCTCAAGCGTTGTCACCCTGGTTATCCTCTGAGAGACGGAAATTATCGTATTGATCCCAATGGCGGCTCGCCAGAAGACCGCTTCATGGCTTTCTGCAATTTTACAAAGCAAGCGACGTGTATCAAGCCCAAAGTAAACAAGTTTGACAAGAACACATGGAAGACACCTGTTGATCCGCGGAGGAAAGTTGCTTGGTTTGCTGAAGACTTGAACAACGACATCAAGATTGAATATGACATCGACGAAGTCCAATTGTCCTACCTACAACTACTCAGCACCCACGCTCGGCAAGAAGTAACATTTAAATGTAAAAACTCGGTGGCCTGGTACGATAAGAGCGCGCAAAACTACAACAAGGCTGTCAAGTTCGAAGGCATAAACGGATACGAATTTAGTACCAAGTCAAAATCCAAGAAAGCGAGCGTTAATGTGCCGTTTGATGGCTGCCAGATTAAAGACGGATCAATGCGGGACACGCGGTTTATGATCAGCTCCAGCCAAGCTTCAAGACTTCCTATTGTTGACTTTGCCACTTACGACTTAGCAGGAGAAATTGAAGTTGAAATCGGTCAAGTCTGCTTCTGGTGA

Transcript

aawi_s0061.g86.t2

ATGGATAATTTTTCCGCGGCATTCTTTAATACTGTCTAACACGCACAAGCCAAGAAGGGGCAGCTGTCTGTCCATTGGACCTGTATGTTTCAACCCTTTCAAGCGACGCGGGTTGAAAAGATGAGGTTCTTTGACATTAGAATAGCGTTTTCTTTATGCCTCGTGCTGTGGAGCTGCAATACAGAAGCTCAACATGGTGGTATGGGTGGAGAAAATGTCGAAGTTGACCCGGCATTAAAAGGCGAACAAGGACCTAAAGGATACAAAGGTGGCTCAGGAGTATCAGGAAATCGTGGACCAAGAGGAGACCAGGGTGAACCAGGAGTTAATGGAAGAGATGGACCTCCAGGACCACGAGGTCCTAATGGACCACGGGGACCCATCGGCCCTCCTGGTCCACCTGGACGGCCCATGATCACAATCATTGGTGTGCCTGGGGTGCCGGGTAAACGTGGAGAGAGAGGTTCAGCTGGAAGAGATGGTCCACCGGGTCTTTCTGGAGAGCCTGGTCCTCCTGGACCACCCGGAACGCGTGGGTCACCTGGAGCTCAAGGTCCCCCAGGTGAACCTGGTTTGGTGGGCAGATCTGGACAAAATGGAACAAAAGGTCAACCTGGAATGCAAGGCCCTCCTGGACCAAGGGGTCCTCCTGGGGCAAAAGGAGCAGATGGGGTGAAGGGGGCTGATGGTGTCAAGGGGGACATGGGTAGAAGGGGACTTAAAGGTCCTAAAGGTCTTAAAGGGCCCGGAGGACTCAAGGGTGACAAGGGATCCCGCGGTGAAGATGGTAGAAATGGAACAAATaagataactcaagatgtgcttgcgagatgttcggtcatcgtgtctgatcatgatGGAGACCCAGGTGACATAGGAGAAACGGGGCCAGAGGGAGCCCCTGGTAGACCAGGCAATCAGGGAGCCAAAGGAGGTTCAGGGCCACAGGGTCAACAGGGACCTCCTGGTGTTCCAGGCCCTGCAGGTATACCTGGAGGTCCTGGCGAGAAAGGCTCTCCTGGAGACCCTGGTGTACAAGGAGAACGTGGAAAACAGGGTTTGCCAGGACAAAGAGGAGCTCCAGGAAGTCAAGGAAATCCTGGTGCAGATGGATCCCCTGGATTGGATGGAACTGAAGGCCAGAAGGGAGCAGAGGGTGACCCAGGTCCTATGGGTCCTCAAGGATTACCAGGTCCTCCCGGACGCCCGGGCAAGGCTGGTGAGGATGGCAGAAATGGACCACCTGGCTCACCGGGTGATTCTGGACCACCTGGGCCGCCTGGATTACCTGGTCGTACTGGCTCAAGGGGAGATCCTGGCCAAGTAGGAGCCCCAGGTCCAAGTGGACCTCAAGGGAGACAAGGAAGACGAGGGAAGCAAGGTCGGATGGGAGCTCCTGGAGAACAAGGTGCCCCGGGTGATGAAGGACCTCAAGGCCCTATTGGAACAAGTGGATCTCCTGGCGCTGATGGTAGACAAGGTGAACCAGGGTTTAATGGCAAAGATGGACTAAAAGGAGAAAGGGGACCTGATGGTGTACCTGGTGAAGATGGGTTTCCTGGTCCAAGAGGTTCCCCTGGTGCCCCAGGAGCCCCTGGAAGGGATGGCAAAAATGGAGATAAGGGTGCTAGAGGAAAAGATGGTGAACCTGGATCAGCAGGGCCAGCGGGATCCCCAGGACCAAGTGGTGGTATGGGAATGACTGGAAAGAAAGGAGAGAGGGGTTCCACCGGTAAGCCAGGAATCCCAGGGCTGCCTGGACCTAGGGGTTCCCAGGGTGCACGTGGAGACTTTGGAGAACGCGGTGAGACTGGACAACCAGGAACTGATGGTGCAGCTGGTCAAAGAGGTTTACCAGGCCCTGTTGGGATCCCAGGTTTAATGGGTGCTCAGGGAGAGCCTGGTTCACCTGGGGCACCAGGTGCTGATGGAAAGAAGGGTCCACCAGGTGAAAGCGGACAAGATGGACTTGCAGGAGACCCAGGTTCTGTTGGACCACAAGGTGAGCCCGGTCCTCAAGGAGAAACAGGCATCAAGGGTGAAAAAGGAAAACCAGGAGAGAATGGTGCAGATGGAACTCCAGGTGAGCGCGGTGAACGAGGGCCAACAGGACCACAGGGCAACGTAGGGGCATCGGGTCCTCCTGGTCTGTCAGGTTCCTCAGGTCCTGTCGGAAGCAAAGGAGATCAAGGTGATCCAGGACCCATTGGACCACAAGGAAACCCAGGAAGGGACGGCAAACGTGGCTATTCTGGTACACCTGGTTCACCAGGGCCACAGGGAGATCAAGGACCAAGGGGTGCCCCTGGACAATTTGGAACACCTGGTGCCCCTGGAGACTCCGGTCTTGCTGGTCCCCGTGGACCACCTGGTGCTTCAGGACCTTCAGGAGACAATGGGGCAGACGGGGCAACAGGACCACCTGGCCAACCGGGACCTATGGGAGACATTGGCGAACAGGGTGCTCCTGGAGATATGGGTGATGTTGGACCTGAGGGAGATGTTGGACCACTTGGACCACCTGGTCCACAGGGAGAAATTGGAGCAACTGGTTCCATTGGAGCTATAGGTGTGTCTGGCCCTTCAGGTGAAAATGGAGCCCCTGGGCCCATTGGTTTGCCTGGACCAATGGGACCTCCAGGCACAGATGGAGAGAGGGGACTGGATGGAGCAAAGGGTGACCCTGGTGAACCTGGATCTGATGGCAAGAGAGGCATGACTGGGCAGCCTGGTCTTGATGGAAGACCAGGCCAAAGAGGCAAATCAGGAGACCCTGGTAAACAAGGACCCCCAGGTCCACCCGGAGCACCTGGATCGAGAGGAGACGTAGGCCCACCTGGTAGCGCTGGACAGAGAGGACCACAGGGACCTCCGGGTCGCAAAGGACCAAGGGGAAGGGCTGGAGCAGGGGCGGAACCTGGAAACGATGGCCCTCCTGGTGACACCGGACCCGACGGCCCACCTGGCCCGCCTGGGAAACCTGGATTCCGTGGCCTTGACGGAACACCCGGTCTGCCTGGAACCCCTGGTAACCCTGGGGTACGCGGGAGCAAGGGTGCGAAAGGATTTCCTGGAGGGGGTGGGAGTAATGGTGACCAAGGACCGAGAGGAGGACCTGGACCGAGAGGAACCCCAGGAGACCGCGGACCGAAAGGAAATGAGGGTATCCGTGGAGAAAATGGTGCCGATGGCCTCCGAGGACTGCCAGGCAACGGTGGAGCTGAAGGTGCAAAAGGTGCGCGTGGATCTCAGGGCACCAGGGGAGAAAAGGGTCAGCGAGGTGTTGCGGGATCGCTTGGTCGTCAAGGGTTACGAGGGAGAGTGGGACCAGCTGGTGAACCAGGGTTTAACGGCCCACCAGGTCCCAAGGGAGAAAAGGGAAATGATGGTCCCCAGGGAGAAACGGGTCCAGATGGATTCACTGGCTTGCCGGGTCCATTGGGTGATAAGGGTTTGAAAGGTCGACCGGGTCCCCGCGGATTTTCGGGTACTCCAGGTCTACCGGGACCACCTGGACCTCCAGGCCAACGCGGAGAAGATGGTTACCCTGCGTCACCATTGCAACGCATATCTCGGCGTGACCCAAGTAAAGGACCAGGAAGCGTTGAGCCAGGACCCGATGAGCCAGGACCCGTTGAGCCAGGACCCGTTGAGCCAGGAGAGGGATTCAACAGAAGACGACGATCTGTTGAGGACATGGATGACCAAGTCGCAGACCGTGTTGCGTTTCTGGCTGAAAAGATGTTTCTGCTCGAGCGCAGAGCCAATTCGTCTTTGTTTCCAGCAAAGACTTGTCGTGATCTCAAGCGTTGTCACCCTGGTTATCCTCTGAGAGACGGAAATTATCGTATTGATCCCAATGGCGGCTCGCCAGAAGACCGCTTCATGGCTTTCTGCAATTTTACAAAGCAAGCGACGTGTATCAAGCCCAAAGTAAACAAGTTTGACAAGAACACATGGAAGACACCTGTTGATCCGCGGAGGAAAGTTGCTTGGTTTGCTGAAGACTTGAACAACGACATCAAGATTGAATATGACATCGACGAAGTCCAATTGTCCTACCTACAACTACTCAGCACCCACGCTCGGCAAGAAGTAACATTTAAATGTAAAAACTCGGTGGCCTGGTACGATAAGAGCGCGCAAAACTACAACAAGGCTGTCAAGTTCGAAGGCATAAACGGATACGAATTTAGTACCAAGTCAAAATCCAAGAAAGCGAGCGTTAATGTGCCGTTTGATGGCTGCCAGATTAAAGACGGATCAATGCGGGACACGCGGTTTATGATCAGCTCCAGCCAAGCTTCAAGACTTCCTATTGTTGACTTTGCCACTTACGACTTAGCAGGAGAAATTGAAGTTGAAATCGGTCAAGTCTGCTTCTGGTGAACTCTGTACAATAGCTTAAGTCCGGTCCCATCTACTCGGAACTACCACTAGTGTATGGATTAATAGCCATTTTGCTTAATAAATTTAGAAATGCCCTATTTTAGTTCTTCTAAGTAATAGTTCATGAAGGATGGATCGTCGTGACATTCTTCAGTTTTTCAATGTTGTTCAGGTTTTAAACCATGAAAAATTTTTCGATATAAAGAAATTATTTTGTATGAGCAAGTGATGTAATCCCGATTTGTTTTATCTGAGAAATATGGGGTTATTTTGCAGTGAACCTCTCCCAGTTTTGAAAGGAAGTTAATAATTCCATGATGACCGAGCTGTTTATCGTAGTTAATTGCTTTTTAGTTTTGTTATTTACTCAAGCTTTTGTATTAATGTGAACTATTAAAAGAATCCAGTATACTCTGGTGGAAAGGCGTTTACTCAAGTGAGGGACTTTTACTCATACCCACTCCTCCTTCGTGACACCAGTTTCCCGTCTATTGAACTGACTGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P08121	Collagen alpha-1(III) chain OS=Mus musculus OX=10090 GN=Col3a1 PE=1 SV=4
Q6P4Z2	Collagen alpha-1(II) chain OS=Xenopus tropicalis OX=8364 GN=col2a1 PE=2 SV=1
P13941	Collagen alpha-1(III) chain OS=Rattus norvegicus OX=10116 GN=Col3a1 PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000267 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01410 all species →	COLFI	Fibrillar collagen C-terminal domain	Family	Interproscan
PF01391 all species →	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000885 all species →	Domain	Fibrillar collagen, C-terminal	Interproscan
IPR050149 all species →	Family	Collagen superfamily	Interproscan
IPR008160 all species →	Repeat	Collagen triple helix repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24023 all species →	COLLAGEN ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005201 all species →	Molecular Function	extracellular matrix structural constituent	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0030020 all species →	Molecular Function	extracellular matrix structural constituent conferring tensile strength	Interproscan
GO:0030198 all species →	Biological Process	extracellular matrix organization	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0062023 all species →	Cellular Component	collagen-containing extracellular matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19719	COL2A; collagen type II alpha	-	Glycosaminoglycan binding proteins	ko00536	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.