Gene detail

Detailed information of aawi_s0085.g33.t2 in Acropora awi

Genomic Location: sc0000085_pilon:539077...554546
NR annotation: XP_015755962.1, PREDICTED: stAR-related lipid transfer protein 3-like [Acropora digitifera]
Species Acropora awi · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

aawi_s0085.g33.t2

CGTTCCCAGCCTTCTCTCTTTTATTTGAGGCTCCTTTTTACAATCCGTAGACCGATTTCAACTAGTGATGAGACCTGTTGTGCGCCGTGATCCAGAGTTCGCGGAAAGCCTAGACTCTGGAGACGCCGTGTTTAGACAATCAAGAGGGTGTCGATCTTTAGTTCCAGCAAGGCGTCTCTTCTGTCTTATCACCGTTTTTGACTTCCTAGCAGCTGTAATTATCTGGCTTCTTTACGCCAATGAATGTAGTGGTCAAGAGCAGTTACAGAAGATACTAAAAGAAGAAATTTCACAATACGCATTTAGAAAGTCCCTTTTTGATGTTGTGGTTTTGGCGTTATGCAGAATGCTTATTCTTTTATTAGTATATGCTCTGTGTGTGAGTCGCAAGTGGTACTGCGTAGCGATGACCACTGCTGCTACCACTGCTTTTGTTGTTGCTAAAGCTGTGAAGACAATTTCCTTTGGATCTTCAGGTAGCAACAAAACTCTGTTTTATGTACTTGTTTTGTCTTCACTGATCTTATCATGGGTAGAAACATGGATATTTGACGCGAAGGTAATTCCTTCAGAAGTTGAAGTTGAACAGCGACATCACCGAGATGTGGAGACAAGATCATTGCTGAATTCGCAACACCGTGGGTAAGGATTGCTTCCCTCTGAATTTAAGTCATGTTGTGATTTTATCTCTTGCACTGAAGTCGTACGAGTGTCAGTGCAATAAGTTTGAACAACATACAGGGAAATTTTTATTGAAACTTTGTTGCTTATAGTTAATTTTTAAGTATTATGATTAGTTTAGTAACTTATGAATTACTTCAAGATGACTTCTTAATGTACAATTTTTTTAATTATGGACAAAGTTAAAGTGGTTCTAAGCAGTTCCATTGTTAAGCCTCAGTGTGTTAACAAGCAAAGTATTCATGAGCAGTCAAAGAAATAGCACTTTTGCCTAATTTCTAGAGTCATCTATAGTCATGATTGGTGATTATTTTCTTTCGACTGAGCAGCAAACAACCATTATCAGTCAAGTGTTGTACACTCAATAACTATTTGGAATCAATGTCATTTTTGTTCTTAATTTTAGACTCCATACTGCACAGTCACTGTTGTCAGAGCATAGTTTTTACACACCACAAGGCTCTGACACTGAGAGTGATGTAGACGATCTGGAACAACCAGCAACATTCGGACCATCAGCACAAGATAGAGAATTGATTGAAACAAGCAAGCAAACAATGGCAAAGACTTGGCAATTAATGAGCTTAAACGACGGTTGGAATACGGAGAAAGAAAAGGATGGAATTACAGTAGAAAGTAGATTTATTGCTAGTGGGAGAAAAATCTTCAGATTGAAGAGTTCTATAGAGGGCAAAGCTGTAGATATTTTTAACATAATTGTTCTTCATCCTGAAATGGCTCACAAGTGGGGCGGAAGCATAACGAACTCATACGTTGTACGACGAATTGACGAGCAAACTGATATTGTATACAATTCTACTGGAGTAGAAGGAGGAGGAATGGTGTCTTGTCGGGATTTTGTAAACTTGCGGCGTTGGGAGAGAAGAGGAGATGTTTTCGTTTCTTGTAACTCAACTATCGCTCTCGATGAACTACCCCCTAAAACGGATCACGTAAGAGGTGAAAATGGCCCCGGTGGTTGGGCCTTCCGAGAAGCAGAAGGCAATCCAAACAGAACAGAATATATGTGGTTGTTTGATGTCGATCTTAAGGGATGGCTACCTCAGTCAGTCATTGATATTGCCATGTCACACATGTTATTTCGTACGGGCCAAGGAGTCAGGAGCTATGTTAGAGAAACCTTGGCTGAACGTCGATAGAATTAGTTAGTTTAGTAGCTAGATATTGTAGATAACACGAGCAATATAGAAAATTATCTTTCGTGAGAAACTCAGGCTAGGTCGGACTGAGAGAAATCCAAAGATGTGTCTCAGGAATTCTGAACGAGGTGCGTTCCTTCCGCAATCAAGCGCATTTTTAGGTTATTGCTCCCGCAGGCAGACACCATGCTATTTTGCAATGTGATAAAATTACATTGCTAGTGACGGAAGGCCATTCATTTAATGTCATCAAAGTGTACTCTCTCCTCATGAAAATTTACAGGACTGTTTTAATTCACTAACAACATGGAAAACGAAAATGAGCAACCTAGTCTTAAATAGGGGGAAAAAATAGGGAACATGGCCATGAGCCCATAAACAGGACCGTATTACTCTGATAACGAGCCCGTGTTTCGGCGTTTCCGAGTACGTATGAAGCTGTTTTGAAAGCGGCATCGTTTCACTTGATTGGCTCTTATCGATGTTAGGGGCATTTCTCGATTTATGCAAGACTTCTGATTGGCTGCGAAGGATGCTGCGTTAGTCCAAAAATTTAAAATAGCTGTTTTGGCACAATAATCAGAAGTAATACACTTTTGTTCATGGGCTCCTTATAAGGTGCATTAGCGCGCAAAGGAAAGTGGGAAAGAATTAAGTCAGCTGGTACCGCTGTTTTCGTTCCCACGGCGTCTGGTGGTTGAGCTTTGAGGCAGGTCACGAAGTGTTGTTCGCTATTGTTTAGCGAAAACGTGGTTCCTAAAACTAAATCTACTTGGAATTAAGTCTCTCACAGTGACCCTCTCACAAGGGCTTTTGAATGATAGTTTCTTGTCAAATAAAATCTAGATAGTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95772	STARD3 N-terminal-like protein OS=Homo sapiens OX=9606 GN=STARD3NL PE=1 SV=1
Q9DCI3	STARD3 N-terminal-like protein OS=Mus musculus OX=10090 GN=Stard3nl PE=1 SV=2
Q14849	StAR-related lipid transfer protein 3 OS=Homo sapiens OX=9606 GN=STARD3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005237 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10457 all species →	MENTAL	Cholesterol-capturing domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019498 all species →	Domain	MENTAL domain	Interproscan
IPR051869 all species →	Family	StAR-related Lipid Transfer (STARD3)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46121 all species →	STEROIDOGENIC ACUTE REGULATORY PROTEIN-LIKE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005765 all species →	Cellular Component	lysosomal membrane	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0031902 all species →	Cellular Component	late endosome membrane	Interproscan
GO:0099044 all species →	Biological Process	vesicle tethering to endoplasmic reticulum	Interproscan
GO:0140284 all species →	Cellular Component	endoplasmic reticulum-endosome membrane contact site	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for aawi_s0085.g33.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.