Gene detail

Detailed information of aawi_s0085.g70.t1 in Acropora awi

Genomic Location: sc0000085_pilon:1114347...1129685
NR annotation: XP_044163345.1, RNA-binding motif, single-stranded-interacting protein 2-like isoform X3 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aawi_s0085.g70.t1

CATGTCCTGTACtttcttttcttttctttttttttttttAATAAAATTTCAGCAACAACAACAACATCAGCAGAAACCTTACCAAAGTGCACGTGCACTTAGACCAAGCCCAGCAGGACCATGGCCATACCCGCCATGGCCAGCTGTAGGATTCACACCAGGAGCTCATGTGTATAGCTTCCAACACCCAGGGGGATACACCATACCAAGTAGTCCTACTGCAAGCTCATCTCAAAGACGCTTATCTGCAGGTGACAGCCATGATGAACCTGAAGAGAAACTTAGCAAAACAAACCTTTACATTAGAGGCCTTTCACCCGGAACAACCGATGATGATTTAAGTAATTTATGCAGCAGATATGGAAGTATTATTTCAACTAAAGCTATACTAGATAAGAATACTAATAAATGTAAAGGATATGGATTTGTGGATTTTGAGTCACCAGCTGTAGCACAGAAAGCAGTAACAGCTTTGAAAAACAAAGGAATACAAGCTCAGATGGCAAAGCAACAAGAGCAAGATCCTACAAATCTATATTTCCTTTATCTTCCAAGTAATTTTGATGAAGCAAAATTAGAAGCAATGTTGAGAAGATATGGCAAGGTGATATCAACAAGAATTCTTAGAGATACAGACCACGAGAGCAGAGGAGTGGGATTTGCTAGGATGGAAAATACACAAATTTGTGAACAAATAATTAAAGACTTTAATGGTAAAAAGATTCCAGGTAGTATTGAATCACTAGTTGTAAAATTTGCTGATGGAGGTCCAAAGAAAAGACAACAGACACAACAAAACCATGATAGTTCCTGGCCACTTAACAGACCGGAGGGAGTGCATATGTTGGGGTATGATCCACTTGTTGTGCAGAATGGGTCCACAGTAAACACCTCAGCAAGAGTGACACATGCCACAGTTCTTCCAGGGCAAGGAGCAACACTTGTGCAGACTAACATACCATTAGCATACCAGCTTGCTGCTGCTGGTGGCGGCAGCTGGTTACCTCAACCATACATTCAGATGCAGCATCAACTACAACCGAGTCAACTTGCAGCAACGCAAGCTGCAGCTGCAGCAGCAACTGCAGTGACACCCTCGCCAATCCAAGAACACAACGTTGCACCAATGCAGCAGAGCTCTGTGCAGCACTTAGCAAATCAGATGAGCCAGTTGCAAATGTCTGGCTCACAGTACATCACCAGTCCAGTACACAGTCCATTGCAAGGTTCATGGCAAATGATGCACCAGCATGGACAACCACATCCTCACTACATGTCACTTGAGGATCATTCAATGGTGGGTGAGGGTGACCCCCTTGGTCAACCTCCCATGTCACCACAAGCCGGAGGTATTCCTCAACATCTTTCTGATCATGCTCAATCAATGGAAGACCACAGGATGGGAAGCTATGCATCTCCTTATCAAAGAAAATGAAGATAACATAAGAAAAAGGGCAACAGCAAATTATTTAAATTTGAAGAGATGAAATTGTTTCCGATGATGATGAAGATTGAAAACAGAGAAAGCGACATGAGGAAATGGCTTCAAGTCGTATTGGGACTGCAATGGCTTCAACACGGGTGTTAATTTAATTAAGTGAATTCAGCTCATGTGTTTGTTGTTTCTTTTCGCTCAAAACGAAAGGTACGAAGATGTGTATTTGTGGGGTTTTCTGTAAGATTTCAAACGGTCTTAAAAGACTTTGTTGAAAACAGCAATGTTCAGATGAAGAAACGACGCCAATACGACGTGTGAATTTGATGACAAGAAATTTCAAAGATTGAGCATCCTATTTGAACGGTGGATGAAAAGTCTTTAATGAGAACCAATGATCAAGATGAAATATTGGAAATTACAAACAATTTAAATGGGAAGCAGTTTGGCAAGTTTAGTCGTAGGTTTGATCGAGACTTGTTTTATTACACCCATTCCTACAAAGCGAAATGGAAAGTTTTAAAAGAAGGCGAATACTCAACTCGAGCTTGCGGAACCAGTTTCTCGCAAGTTGGTGTTGCCGTTGT

Protein

Uniprot

Uniprot term	Description
B4MM23	Protein alan shepard OS=Drosophila willistoni OX=7260 GN=shep PE=3 SV=2
B4LFQ9	Protein alan shepard OS=Drosophila virilis OX=7244 GN=shep PE=3 SV=2
B4QRJ0	Protein alan shepard OS=Drosophila simulans OX=7240 GN=shep PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR002343	Family	Paraneoplastic encephalomyelitis antigen	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
-	-	-

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan