Gene detail

Detailed information of aawi_s0089.g144.t1 in Acropora awi

Genomic Location: sc0000089_pilon:1775184...1780622
NR annotation: XP_029199229.2, LOW QUALITY PROTEIN: poly(U)-specific endoribonuclease-B-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aawi_s0089.g144.t1

CCGCTCCTGTCACGTACACGTGGACACGCGAACAACCGTGCTCATCACACGTCTTGCAGTGATTTACACATGGCTGGCAAAGGATTTGACACACATCCTGAACTGTCAGCACTATGTAATCAAATGTGGGACGTTGACAAGAATCGTCTCACACCAGGAGTTGACTACAGAATAGATCCTCAAGGAAGAACCCGCTACAACTCAACTGTAGATCATGCTAAGGACCCACTTTTTTCTTATGTTGATCCAGAGGTGTTTAAACGCGAGACGTATGCAAGATTTATAGCTCTGTTGGACAATTATGAAAGTGAAGGTGGTCATGGGGAGGTCGTTACACAGCACGAAATACGTGAGAATCAGTGTTTCATTGACGCCATCTACGAGACTGAGCCAATGAAGATCGCACACAAGTACCTGGCTGAGAAAGGACTAATGCCTGGTGATCGTCCTGGCTTCAAGAAGGCCCTGTATAATTTGTGGTTCAAATTGTACCGTCGAACTAAAGGAGTGAGGCAGTTGGACTCCTCAGCCTTTGAGCATGTTTTTGTCGGTGAGACACGAAACAAAGGAGATGTGATTGGTTTCCATAATTGGATACAGTTCTACCTTCAAGAAAAACGTGGCCTGGTTGACTATAGAGGCTTTTTTCCATCCAGAAGGAAGAGGCACACCAGCAGTGAAGAAGAGAGTTACAACCAACTTATAACAATCCAATTCACCTGGAAAGGTGACATAAAGCCAATTGGTAGCTCATTTATTGGCACTAGCCCAGAATTTGAAATGGCTCTTTACACAGTATGTTTCCTGGCCGGTGAAAAGAAAGATGTGTGTTTGGAGATAGACGACTACGATGTTATTGTTAAGGCGCATAGTATGGGGCCTTACCTTGGCACATGTTATCCATTGATCCCATGAAGTTATATCATCAAAGACGTGTAGGCTTTTTAAACAATTTTAATTCAGTGGTAAAGATTATCTTGTTTGTGATTAATTTCATCTTGTTGTGAttggctaaaaaatcttgtgccattttttttttaccgatgtgaagcgaaagtaaaatagaccgctcattttcccacaccttgaagaagtcacatgattggctattgactttgaattctgattggttcTCTGGATATCAGTTTTGGGTGGTCTGGTTTGCGACAATAGatggcggccatttttatttctgttgtttcaactagctattatgggatgctcagagggcaaatacatattaattATgttattgctggaatagttactccaaaatatggtgagaaactttgtgacacataaacaggtacaagcagataaacgacactctatttaggcagagaataactgctgggtcagccactgatctctagttattaggtctaagcgccggctcgaaatggttagctttcataaattgtactggtttcaccataattaaacttggtaaacctttggtaagactactaagatcggttggtactttatatacataaatttaagtttctcaccatattttggagtatccattctagtcacaaccAtatttgccccctgagcatcccattatgtcttttgaaaTCAGAGAACTCAAAATGGCCGCCATATCTccataACGGTCTATTGTTTGTGATACCAAGTTCAAAATTTAAGTCAATCGTGAACATTGTAGGGAATCAAATACGCCAATCAGAAAACCGAGAAATGTCTTCTCAAAATGCATCGAATATATAATATATGGTCGACAGCTAATTTGTTCGACAGCTAATTTGGTGAGAAAGGGAGCAAGATTTTCTGGCTAATCACTGAATGTGACTTAGTGGAGAGCTGGTCTCATCCTCATTATAAACGATTTCGTCCAACAAGGCTTTATTTTTAGTAGCTTTTTGTGGTATATTAATGAAGATGGAGGGTTTGCAAATAAAGAGTATAAAGGGAGTTTTGGTGTATTTTTGTTCACCTGGAATTTCCAAAAGAACCCTCAACATGATCAGCATCTGCACGTCCTTCTCGTGCTGTTTTCATTTTGGTTCATTTTTTGCACGTGCAGTCCCACTGTGCTTGCGTTTCGATTCAAGTATTGAATGCACCAGTAATTAGAAAAGTGTCAACGTAAGAGGAAACGCAAAAACATCCTCATGCGCAAACTCTTGCGCATGCGGAGACCAAAAAACACGTGAAGGTAACTCATGAACAAAGAATCGCCAGAACGTTTCTATTTAATTTGCCTTTATTTACATTACAGTCTCATAAAAGGCTAAAACTATCCATCTTATTGTGAGAGAGTGAAAATATAATGTAATGTGTATAAAtgaaaataaaataa

Protein

Uniprot

Uniprot term	Description
Q503V9	Uridylate-specific endoribonuclease B OS=Danio rerio OX=7955 GN=endoub PE=2 SV=1
Q8JFY9	Poly(U)-specific endoribonuclease-A OS=Xenopus laevis OX=8355 GN=endou-a PE=1 SV=1
B1H3D5	Poly(U)-specific endoribonuclease OS=Xenopus tropicalis OX=8364 GN=endou PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09412	XendoU	Endoribonuclease XendoU	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018998	Domain	EndoU ribonuclease, C-terminal	Interproscan
IPR037227	Homologous_superfamily	Endoribonuclease EndoU-like	Interproscan
IPR039787	Family	Poly(U)-specific endoribonuclease	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12439	PLACENTAL PROTEIN 11-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004521	Molecular Function	RNA endonuclease activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14648	ENDOU, PP11; poly(U)-specific endoribonuclease	EC:3.1.-.-	Enzymes with EC numbers	-	deepkoala