Gene detail

Detailed information of aawi_s0092.g37.t1 in Acropora awi

Genomic Location: sc0000092_pilon:944177...962891
NR annotation: PFX32572.1, Testisin [Stylophora pistillata]
Species Acropora awi · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

aawi_s0092.g37.t1

ATGTACTCGCTGCAAGGAATTTCAGCGTCTGTTATGGAGATTGCTACAAATACTTGCAAGGCTTTGGGAATTCCAGACAAGGATTTGCAGAGTTGCATTTTTGACGTAGCTGTAACCAATGACACAAGCTTTACAGATCAAGAACGCTTCAAGAAAAGTTGTCCTAACCAGTGCTCTGGTAAAGGCAGATGCATAAATGGAACATGTAATTGCTTAAAAGGATGGGGCGGAGAAAGCTGTGATAAAGGTTCTTGTTCAAACTGCTCAATACATGGAAAATGTCTTAAAGGATTTTGTGAATGCGACATAGGCTGGCAGGGGCAGAGCTGTGACAGCAGAGCTAATTGTTATAATGTCAGAAACTGCACAAGTCCTACGAATGGAGTTTGCAAAGCAACAGACACTTGTCAGTGTAATCCAGGATTTATTGGTTCTGACTGCAGTATTATTCCTACCTGCCACAACGTATCAGACTGCAGTAGTAATGGACTGTGTGTGGATTACGATGTTTGCAAATGTGACAAAGGATGGACTGGGGATAACTGTACACAATTCTCTTGTGAGCACTTGGATTACTGTTCAGGGCGTGGTCGTTGTGTAGATTTTTATCAATGTGCCTGTGATAACGGCTGGACTGGAGGCAGTTGCTCTGTCCCTGATTGTCTGGATCTCAACCAGTGTTCAGGAAAAGGAGAGTGCGTATCACCAAATTTATGCCGGTGTTACCTTGGCTATACTGGAGCAAACTGTAGCCAGGAACCTGATTGTGCTAGATTTGACAATTGCAGCGGACATGGAGTTTGTGTAATGTCAAAGACACTGAGAACATCTTGCAGATGCTTCAATGGTTTCAGTGGTGTTAACTGCAGCCAACCCATATGTACAGAACTCAACAATTGTTCTGGTCACGGTGTGTGTATGGAGGCCGAGTTCTGTAAATGTTACCTGGGATACAATGGCACGGACTGCAGTAACTACTCTTGTGAAGCAGTTAATCACTGTTCAGGTCACGGCACCTGTATTGGATATGATGTTTGCCAGTGTAACGTTTCCTGGTCGGGAGCAGCGTGTAACATTCCAGATTGCAGCGCTGTAAACAATTGCTCCGGTCAAGGAAACTGCATCGGTGTCAACAGCTGCTCCTGTTATCCGTTGTTTGACGGTAAAGATTGCAGTCAAAAGGCAGCAAAAAATCTTCATGCCCCTGTCTTTGAAAGATCAATTTACAGGGTCGATATATCTGAAAACTCTCCCCTTGGTACGCATATTTTACGAATGCGTGCCAATGATTCTGACTCGGGAAGAAATGGTCACATATTTTATTTCATGACCGGTGATAATGGTGTCGAAAATGTTTTCGCTGTCGATGGAAAAAGTGGAATAATTTACAACTTGGTAAAAGTCGATTTCGAGACTTTAAGGGAGGTTTCATTCAACGTGACGATTATCGCCACAGATGATGGAGTTCCTCAGAAATGGACAAGCACTGTGGTCCAGATTACAGTAACAGATAAAAACGACAACTGCCCTGATTTCGAAAAATCCACACCAGAAAATTTGACAATTGGTCCATCATCTTTAAGTCCAGGAGATGTTCTTACCAAAATTTCTGCCACTGACCAAGACAGTGGAATGAATAGCGACATAACTTACAATATTTCAAGCAATGATGCCTTTACTATTGATCCTACAACTGGCATTATCTCTGTCAAATCGTTTCTTACCAAATTCGAGTACAGGCTCACAGTTACTGCAGAAGACAGTGGAGCTCCTCCCTGTGCGACGGAGACAAATATCACTGTTACTGTAGGAAAAACGAGCTCCAGTCGGCCGCAGACAGATGCCTCTTCCACTCCGTTCACGCCCACAACACCGAAGACTTCAACTCCAAACCAGAAGCCAGAGAAGCCAAGTTACATTTCTGAGTTTACAAATCCGGCTACGGATCCAGTCACCAGTACCAGGCTCACAAGTCCCATTCGTCTTGTTTCATCACCTTTCGCAGAAGAAGCAACTAAATCTTCCCAGAAAAGTAAACATATTATGGTGATTGTTAATATGAAGCCAAGTTATTGCTTAAATTACAATGGCATACTAGAGTTTATGAGGAAACGTTCCATGTTCCATTTCTGGGTTGAAACTTTAGATGCTTCAGATTTTGTACTTGACATGATTAGGCGTGGTTATAGGTTACCATTTGCCGAGTATCCCTCTCAGTGCTTTCTAAAGAATAACagatctgcgcttcagcatccaggctttgtggccgaagcaattactgagcttctTagtaatggttgcattgttGagcactacgttcctccgttctgtgtgaatcccttaacagttgcggaaggaaagaagttgcgtcttgttattgatcttaggcatgtcaacagttatttagttaaacccaaattcaaatatgaagacttgcgctcattatcccaagttctagatgaaggacactggtttttcacgtgggaccttatgtccggctaccatcatcttgatatttgtcctgatcaccaaaagtatctaggttttgcttggcCTTTTTCCGGTGTTGTTAGATATTTTACCTTTGCAGTTCTTCCTTTCGGCCTTAGTAGTGCCTGCTTTTGTTTCACTAAGTTGATGCGCCCGTTAGTTAGACGCTGGCGTTCTATGGGGCACAACAGTTTCATTTATCTAGACGACGGTTTCGGTAGTCAACCAGATAAATGTTCCGCCACGGCAGCAAGCTTTATTCAGCGCAAAGAGCTTTCTTTATCTGGTCTCCTTTGTAACGAGGAAAAGTCGCACTGGGCCCCGATGCAAATTGGCGAGTGGCTCGGTTTCGTGATCGATTCTATTTCAATGTCATTTCGGATTCCAGAGAAGAAAGTCTCCAAACTTAAGGGCTTGTTAGATTTTGCGATTCAGGCGGGGTACTCTTCATTTCGTGAGTTGGCGAGAATCGCTGGTTCTATCATTTCAGTTGCCTTGGCAGTCGGCCCGATCTCTCGTCTTTTGACCAGGCAGATGTACTTCGCTATTGAAACCAGGTCAGCATGGGACGACACAATTCATTTTTCTCCCAGTCTTTTAATCGAGCTCAAATTTTGGTTCTGCAACATCGATTGCTTCAACGGTTATTCTATAAGGCCACCATTGGCGACACATACCGTTGTGTTTTCCGATGCAAGTGATGTAGCTTTCGGAGGTTTCTCCGCTTCGCTAGACGGCACCGTTGTTAGCGGCATGTGGGAACCCGAGGATATCGGCCGTAGTTCTACGTTCCGCGAGCTGAAAGCTATTTATTTCGTGTTGCTTTCCTACGTTGCTCAACTGAAACACAAGAGAGTTAAAATCTTTACTGACAATCAGGGCGCTGCCAGAATCGTTGCTATCGGAAGCTCCAAAGCTAATCTCCAGGCTCTGGCTATGGACATTTTTAATCTCTGTCTTGTTAACAACATCGTTCTGGAAGCGCAATGGATTCCAAGATCACTTAATGAAAGGGCAGATCTTCTCAGCAGATTTGTTGACAAAGATGACTGGTCCATCAATCCTTCTGTATTTCGAGATATTGACGCCAAATGGGGCCCTCACACAATTGATCGGTTTGCGTCGCATTACAACGCCCAGGTTCCACGGTTCAACTCTAAATTTGCCTCCCCCGGCTGCAGCGGTGTTGACGCCTTGTCTCGGGATTGGCGGGATGAGAACAATTGGGTTTGCCCTCCTGTGAGTGCCATCGTGCCTTCTGTTAGAGCtctctcgtcgtgctccggttacggcactttgatcgtccctcagtggccatccgcctatttttggccctttttgcatggcagctcttcccagtttaagtctttcgttaagggagtgtttgagcttcctcgtatagaagacctcttgttggaaggtccaggccagaggcaaatttacaaggcacgtccctcggtcttcagtggttgcccgagattcaaaatgttagccttacgggttgattttaggtga

Transcript

aawi_s0092.g37.t1

ACAACAACGCAACTAATGACTTCGCAGGACCAGATGGAACGGTGTATAAAGACGCTGTTCAGTTTGCAGAATCATGGAGAATAAAGGATTGTAACAAAGGATCCGGCACACAGGGTTCTTGGTCATGGAACTCATCCAACTTTTTCCATAAAGATGTGTTGGACTCGACATACACCGATCCACTATTCAAACCCATGTACTCGCTGCAAGGAATTTCAGCGTCTGTTATGGAGATTGCTACAAATACTTGCAAGGCTTTGGGAATTCCAGACAAGGATTTGCAGAGTTGCATTTTTGACGTAGCTGTAACCAATGACACAAGCTTTACAGATCAAGAACGCTTCAAGAAAAGTTGTCCTAACCAGTGCTCTGGTAAAGGCAGATGCATAAATGGAACATGTAATTGCTTAAAAGGATGGGGCGGAGAAAGCTGTGATAAAGGTTCTTGTTCAAACTGCTCAATACATGGAAAATGTCTTAAAGGATTTTGTGAATGCGACATAGGCTGGCAGGGGCAGAGCTGTGACAGCAGAGCTAATTGTTATAATGTCAGAAACTGCACAAGTCCTACGAATGGAGTTTGCAAAGCAACAGACACTTGTCAGTGTAATCCAGGATTTATTGGTTCTGACTGCAGTATTATTCCTACCTGCCACAACGTATCAGACTGCAGTAGTAATGGACTGTGTGTGGATTACGATGTTTGCAAATGTGACAAAGGATGGACTGGGGATAACTGTACACAATTCTCTTGTGAGCACTTGGATTACTGTTCAGGGCGTGGTCGTTGTGTAGATTTTTATCAATGTGCCTGTGATAACGGCTGGACTGGAGGCAGTTGCTCTGTCCCTGATTGTCTGGATCTCAACCAGTGTTCAGGAAAAGGAGAGTGCGTATCACCAAATTTATGCCGGTGTTACCTTGGCTATACTGGAGCAAACTGTAGCCAGGAACCTGATTGTGCTAGATTTGACAATTGCAGCGGACATGGAGTTTGTGTAATGTCAAAGACACTGAGAACATCTTGCAGATGCTTCAATGGTTTCAGTGGTGTTAACTGCAGCCAACCCATATGTACAGAACTCAACAATTGTTCTGGTCACGGTGTGTGTATGGAGGCCGAGTTCTGTAAATGTTACCTGGGATACAATGGCACGGACTGCAGTAACTACTCTTGTGAAGCAGTTAATCACTGTTCAGGTCACGGCACCTGTATTGGATATGATGTTTGCCAGTGTAACGTTTCCTGGTCGGGAGCAGCGTGTAACATTCCAGATTGCAGCGCTGTAAACAATTGCTCCGGTCAAGGAAACTGCATCGGTGTCAACAGCTGCTCCTGTTATCCGTTGTTTGACGGTAAAGATTGCAGTCAAAAGGCAGCAAAAAATCTTCATGCCCCTGTCTTTGAAAGATCAATTTACAGGGTCGATATATCTGAAAACTCTCCCCTTGGTACGCATATTTTACGAATGCGTGCCAATGATTCTGACTCGGGAAGAAATGGTCACATATTTTATTTCATGACCGGTGATAATGGTGTCGAAAATGTTTTCGCTGTCGATGGAAAAAGTGGAATAATTTACAACTTGGTAAAAGTCGATTTCGAGACTTTAAGGGAGGTTTCATTCAACGTGACGATTATCGCCACAGATGATGGAGTTCCTCAGAAATGGACAAGCACTGTGGTCCAGATTACAGTAACAGATAAAAACGACAACTGCCCTGATTTCGAAAAATCCACACCAGAAAATTTGACAATTGGTCCATCATCTTTAAGTCCAGGAGATGTTCTTACCAAAATTTCTGCCACTGACCAAGACAGTGGAATGAATAGCGACATAACTTACAATATTTCAAGCAATGATGCCTTTACTATTGATCCTACAACTGGCATTATCTCTGTCAAATCGTTTCTTACCAAATTCGAGTACAGGCTCACAGTTACTGCAGAAGACAGTGGAGCTCCTCCCTGTGCGACGGAGACAAATATCACTGTTACTGTAGGAAAAACGAGCTCCAGTCGGCCGCAGACAGATGCCTCTTCCACTCCGTTCACGCCCACAACACCGAAGACTTCAACTCCAAACCAGAAGCCAGAGAAGCCAAGTTACATTTCTGAGTTTACAAATCCGGCTACGGATCCAGTCACCAGTACCAGGCTCACAAGTCCCATTCGTCTTGTTTCATCACCTTTCGCAGAAGAAGCAACTAAATCTTCCCAGAAAAGTAAACATATTATGGTGATTGTTAATATGAAGCCAAGTTATTGCTTAAATTACAATGGCATACTAGAGTTTATGAGGAAACGTTCCATGTTCCATTTCTGGGTTGAAACTTTAGATGCTTCAGATTTTGTACTTGACATGATTAGGCGTGGTTATAGGTTACCATTTGCCGAGTATCCCTCTCAGTGCTTTCTAAAGAATAACagatctgcgcttcagcatccaggctttgtggccgaagcaattactgagcttctTagtaatggttgcattgttGagcactacgttcctccgttctgtgtgaatcccttaacagttgcggaaggaaagaagttgcgtcttgttattgatcttaggcatgtcaacagttatttagttaaacccaaattcaaatatgaagacttgcgctcattatcccaagttctagatgaaggacactggtttttcacgtgggaccttatgtccggctaccatcatcttgatatttgtcctgatcaccaaaagtatctaggttttgcttggcCTTTTTCCGGTGTTGTTAGATATTTTACCTTTGCAGTTCTTCCTTTCGGCCTTAGTAGTGCCTGCTTTTGTTTCACTAAGTTGATGCGCCCGTTAGTTAGACGCTGGCGTTCTATGGGGCACAACAGTTTCATTTATCTAGACGACGGTTTCGGTAGTCAACCAGATAAATGTTCCGCCACGGCAGCAAGCTTTATTCAGCGCAAAGAGCTTTCTTTATCTGGTCTCCTTTGTAACGAGGAAAAGTCGCACTGGGCCCCGATGCAAATTGGCGAGTGGCTCGGTTTCGTGATCGATTCTATTTCAATGTCATTTCGGATTCCAGAGAAGAAAGTCTCCAAACTTAAGGGCTTGTTAGATTTTGCGATTCAGGCGGGGTACTCTTCATTTCGTGAGTTGGCGAGAATCGCTGGTTCTATCATTTCAGTTGCCTTGGCAGTCGGCCCGATCTCTCGTCTTTTGACCAGGCAGATGTACTTCGCTATTGAAACCAGGTCAGCATGGGACGACACAATTCATTTTTCTCCCAGTCTTTTAATCGAGCTCAAATTTTGGTTCTGCAACATCGATTGCTTCAACGGTTATTCTATAAGGCCACCATTGGCGACACATACCGTTGTGTTTTCCGATGCAAGTGATGTAGCTTTCGGAGGTTTCTCCGCTTCGCTAGACGGCACCGTTGTTAGCGGCATGTGGGAACCCGAGGATATCGGCCGTAGTTCTACGTTCCGCGAGCTGAAAGCTATTTATTTCGTGTTGCTTTCCTACGTTGCTCAACTGAAACACAAGAGAGTTAAAATCTTTACTGACAATCAGGGCGCTGCCAGAATCGTTGCTATCGGAAGCTCCAAAGCTAATCTCCAGGCTCTGGCTATGGACATTTTTAATCTCTGTCTTGTTAACAACATCGTTCTGGAAGCGCAATGGATTCCAAGATCACTTAATGAAAGGGCAGATCTTCTCAGCAGATTTGTTGACAAAGATGACTGGTCCATCAATCCTTCTGTATTTCGAGATATTGACGCCAAATGGGGCCCTCACACAATTGATCGGTTTGCGTCGCATTACAACGCCCAGGTTCCACGGTTCAACTCTAAATTTGCCTCCCCCGGCTGCAGCGGTGTTGACGCCTTGTCTCGGGATTGGCGGGATGAGAACAATTGGGTTTGCCCTCCTGTGAGTGCCATCGTGCCTTCTGTTAGAGCtctctcgtcgtgctccggttacggcactttgatcgtccctcagtggccatccgcctatttttggccctttttgcatggcagctcttcccagtttaagtctttcgttaagggagtgtttgagcttcctcgtatagaagacctcttgttggaaggtccaggccagaggcaaatttacaaggcacgtccctcggtcttcagtggttgcccgagattcaaaatgttagccttacgggttgattttaggtgagATTTTTGTCATCTTTGTTTACCATGCATGTTTCTTTTATTTCAGCTCTACTCCTCAGCTTGTCATTGCTCATCTTTCAGTTTCGTCTCACTTTGGTATTGTGATTTTTGTGCCATGTTGTGTTTTGCCTGATTTGGCAGCGTCATTTTGACGTTCTACAATCGGGGATTTGGCGTGAAGCAAACTCTTTGGTCGATCCATCTTTGCGTAGGCTTGTTCCGAACCTTCTCCATTTACAGTTGGAGTCCAGGGCTCCTTCCACCGTGCAGAAATACAGATCCGGCTGGCAGAGGTGGCGTCAGTGGGCAGCTTCTAAGATTGGCGTTCAAGTTATTCCAGCAAAGCCTCTGCATGTTGCGCTCTTTATTAGCGAGCTTACTGTAATCTCAGTTAGCAATAACACGGGGATATCTTCTATAGAGTCAGTTCTTTACGGCATTAAGTGGGGTCATAGTCTGGCCGGGATTGTGGATTGCCCTACTAGTCACCCCCTTGTTAAGTCATCCTTAGAGGGCGCTAGAAGGAAGCTTGCACGTCCAGTTCAGCCCAAAGAGCCTTTATCCGTTGACACAGTTTGTGGGATCGCTGATCATTATATTTCTAGTAGTTCTCTCGCTGTTATTCGTTTTCTTTTCAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NYQ6	Cadherin EGF LAG seven-pass G-type receptor 1 OS=Homo sapiens OX=9606 GN=CELSR1 PE=1 SV=1
Q2PZL6	Protocadherin Fat 4 OS=Mus musculus OX=10090 GN=Fat4 PE=1 SV=2
Q5F226	Protocadherin Fat 2 OS=Mus musculus OX=10090 GN=Fat2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000162 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05869 all species →	Dam	DNA N-6-adenine-methyltransferase (Dam)	Family	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00028 all species →	Cadherin	Cadherin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR015919 all species →	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR002126 all species →	Domain	Cadherin-like	Interproscan
IPR052055 all species →	Family	Hepadnavirus polymerase/reverse transcriptase	Interproscan
IPR008593 all species →	Family	DNA N-6-adenine-methyltransferase	Interproscan
IPR020894 all species →	Conserved_site	Cadherin conserved site	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33050 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0009007 all species →	Molecular Function	site-specific DNA-methyltransferase (adenine-specific) activity	Interproscan
GO:0009307 all species →	Biological Process	DNA restriction-modification system	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for aawi_s0092.g37.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora awi tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora awi, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →