Gene detail

Detailed information of aawi_s0097.g43.t2 in Acropora awi

Genomic Location: sc0000097_pilon:575977...600115
NR annotation: XP_029194566.2, suppression of tumorigenicity 18 protein-like isoform X2 [Acropora millepora]
Species Acropora awi · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

aawi_s0097.g43.t2

GTGCATTTTCACGCGCAGTGCATCTTGGGCAAGTTTTGTTTGAGAACTTTTCCCCAAGACAGTTTATGAAATGAATAAGTGAACAAGGAATTACAAAAGTAACATTAAAACTTCGCAATCGAGGGCGATTTCGATTACATATCGCTACCGGATTGTTTTCAAGCTTGAAAAGGAGAAACCTAGGCTCAAATTCAAGCGACAGCCACAGAAAGTTAAGTGATTTTTTAAAAGGTGCTGGCAAAGGGCAAATTTCACCGCGCCGGAGAAGGCAAGAAATATGGAAGTTGAGAGCAGGGAATTTGCAAACCAGCTAGAGGAACAAGAAACTGCTGTCACAGGTTGCAAAAGATCCGCAACCGCTTCCGAATTAGAATTTGAAAGCCCATCTAAACACCAAAGGATTTGCTTGAGCATGATGTCTTCAGAGCTTCCTGTTACTGTAAAACGTGAATTGCAAGAAGACAGAACTTTACATCCTTGTGAAGATGTGGACATGGTAGATTTCGATGCAACATCAAACAAAACAGTCCCAGAAACGAGCTTCCGTACTTGCACAGATGAAGTATACAGTGAAGAATTTGTCAATGAAGAAAAACTGTACTGCAGTGAGGAATGCATCGAGAGAGAAACAGAGGCTGATTTGAACGTGGATTCCAATAAGAGAAGGGTGCATGCCACAAGGCAAGCTGGCTTGTCAGAACAGGGCAGATCAGCGGGAACTGGTGGCAGAGATCTGAAGAGACAATGCCGTGGACTTGGAATGGCTGCTTCCATTCAAGAGCTCATTGGGTGTCCCACCCCTGGTTGTGATGGCAAAGGGCATGTCAACGGGAAATTTGCATCACATCGCAGTGTTTATGGATGCCCCTATGTGCAAAAAACCAGTCGAAGGAGAACTGACAGTGGAGACAAGGACTCTGAGTTTGGTGCTGAGTCATCAAGATGTCCAACCCCTGGTTGTGATGGATCGGGCCATAAGTCTGGAATGTTTGCCTCTCACAGAAGTCTCTATGGATGTCCAAGGAGAATTTCTGTGGATAAACCCAAAGATGGTGTCCCACCCCTGGCTGTGATGGTACAGGACACAGAACTGGGATGTACACATCGCACCGAAGTATTTCAGGATGTCCTCTTGCAAATAATCATAAATCACTCACACGACAGAGCAAGAGTCCACCAACAACACCTCCTTACAAGAAAGGTTGCACGCCCAAATACATCCTCACAGACAAGATCTCGCCAGAGCAGAGTCCGACCTCTTCAGATTCTGGGATTTCTTCAGCTTCCAGCACTGAAGACAGTTTGGTGAAGAAAGAACTCAGTTTTGATTCCGACAGCAAGGAGACACCCATTCATTTCACTTTTCCAAAAGCCAAGCCACAAGCAATTAAATCTGAACCTCGCGCAGAGACTTCAGTGTCATTGTCGTCTGATGCCACGTTACCGGCCTTTTCTATGCCTAGTGTCATTACTGCTACTGCAGCTGTTGCTGTGGCTAATTCTGTCATGAGTGGCAATGTTAGTGCAACAACAGAAGAGGTGTCTTCACCCCAGGAAATTCTTGATTCCAACGAAGGAGTTAGCGAAACAGAACGAGGCgatggagatgatgatgattatgacgaggaCGCAGTTAGTGTGGACGGGATTTGCTTGGAAGCTAAAGAAGTCGTCCAGTACTCTTCAGATGAGAGCAGCTCAACAGACGAAGAGGAGGAGTTTAGAGACGATGCTGATGATGCAGATTATGGAACCGTGAAAGCTTCTTCAAGATTGATTGGCTGTCCAACCGAAGGATGTGATGGCTCAGGTCATGTTAACGGTCGGTTTGCCACTCACCGGCGTCTGTCTGGTTGCCCAAAGGTTTCAAGGAACGTGCCTCTTCCAAAGACTCCAGTGAAACGTGAATTTGGGTCTGATGGAAAACCCAAAGAACTTTTAAGTTGTCCGACTCCCGATTGTGATGGGCGAGGTCATGTCTCCGGTCAGTATGCCACTCACAGAAGCTTGTCAGGGTGCCCACTTGCGGCCAAACTCCAGCAGCAGGAACACCAGGAAGTCAGGTGTCCTACTGTTGGCTGTGATGGGACAGGTCACGTGACTGGCAAGTACTCGTCACACAGGAGCTTGTCCGGTTGTCCATTGGCGTCGAAGCTTGCTCTTCAAAACGCTGAAACAGCTGGTGGTGGTGGATCACAGTCAGAGAAGTCCGGACCCATGTGTCCCACACCTGGATGTGATGGTACGGGTCATTGCAGTGGACAGTTCAGTACACACAGAAGTTTATCCGGCTGCCCGATGGTGTCTCCTTCGGAGAAGAAAGTCCTAATGAGACAGGAGGCGGAGTCGAAGCTACTCGCCCAAGCGAATTCCAGGGAGCCTGAAGTCAGACTGGTGAAAATCCGCTCAGGGAAAGCTCAACAAGAAATCGACAAGGTCTGTGCCTTGGACAAAGAAATCGATCTTCTTCAGTCTTCAAACCAAGAGTGTGAGAAACTAAACAAGGAACTAGATTCAGAGATAAATCGGCTGGAAAAAAGGCTTACCGTCTGCAAAGAGGAAACAGCCAGCGACAGGCACAGGACAGGTGTTGTAAAGACCAAACTGGCAGTGGTACAGACCCGTTTTATTGCGTCCTTGTCGCATGTTCAGATGCCGGACATTGGAGTCAAACTTACTTTCGATTCCATGGATAAGTACGTTGATAAACTACAAGAAATTATTGAAGAAGGATCTTCAGACTACAGAGCGCTTATTGCAGAGATGAAAGAAGCCTTATCAGATTTTAAGTTTTAAGTGATATAATGTAGCAGAGAAATATCTATGATTTGGAAGCCTATTATGATAAAAACAATTATCAGAAATCATGGTTAATGAATTAATTATAACTAACTTAAATAGAGTAGAATCTTTACAAACTTCGTATGTTTAtatgggggatcttcgctcatatgaccagtaaccgtgctggtttaatgaaacaagaaaattaatgtgcaaaaaTTGCTGTTTAGCAATATGGTCGCCTTTTCTTTGTTTTGGAACTCTAACGTGTCGGCATTTCTCAATTTGCAACACAGAAGTGCTATAATTGAAAATTTTATTCATGAGAATCCCAGAAATTAATTCAAGGCATTGATAGGCAGTTTGCCCAAATTGCCAAATTAAGGTCCCGCAAAAATTTAATAATTTATTCTTGAAATACCGTGCTCTGTTATCCTTTGCAATTTTGTGCAACTTTCCTCTCATCACCATTGCAAGGCAAGTTGCAAAATGCATTATATCTTGCAACGATTAACGATGTATGCAAGACAAGTTGCAAACAACCGTAGTTGTATCGATTGCTTCGTACGTTACGGAATTTTCTCGAACATTGGCTAGTGCAACATCTGACTGCAACTTGTGTCGCAATGGTTTGTGGTAGCAGCCAATATAACGTTTCTTTGACGTCGTGTAATGATCGAAAGCAAGGGAAATTTTAAGAAATATTGCTCATTTGCGAAAGATCGCCCGGTGTTATGACATTGAGAGTTTCATAAAGCGAAGAAGATGCAACTCGCTTGGAAGGAGATGGATACTATTGAATCCAACAGAATGATCATTTTTTTTGTTGGGGGAGGAGGGGGTGGAGAAAATCTTTTCCAAAGTTTGCAGGTGCCAAGTAACTCCTGCGTCGAAGTATTTAGTGGGACATCCTGGCGAGTCGTACAATATGCAATTATTTGACCTTAATGTCTTTTCTTTTGCATTTCAAAAATATTTTAGGAGAGAAGTTGCACAGAGACATTGAGTGTGTAAATAGATATAGAGAAATTAGAAATATGATTTGCTTCGTGACGATCTAATTATTGTTAATATATGATATTCATATAGTCTCAAATTTCAGATTTTATTCATTGTTAAGTATTTTATGTAAAATTGAAATCAGAGTATCATTTTAAAATTATCCAAATTATGCGAATTTTGAAAAAGAAACTGGTCAGAATTACTTACTTGTTAACTTTTTGGGGTGCtttttgtttttttgttttctttttttgtttttttGACTTCTCAATACTTTGGCAGCTTGAAACTCTTCATTTCTCCTTCGACCAGGGGCAGTTGTGACGATGACGTTGCCGAAAGTATTTCGACCCCTCTTCGTCTTTCCGAGAGTTCCCCCGATTAGTGTTCTGCGCAAAAGTTTGGTTTGTTATTTCCGACAGCCTGCCTTACGACCAAAGTTCGTTTTGTAAATAATTTCCAACCATCAGCCGAAAGTTTTTATCAAAACAGATATTAACTACTAAATATTCCTATGTTATTTTATTTATTGGGGTCTGCATAGTTATTTTTAAGAGAAAATTCTGCCTGGTAGGAAGACAGTTCATGAGAAATATCCATTCCTGGAAAATGTAAAATAATTCATAAGTATTAATTCTAATTACTGAGCATAGAAAAAATAAATATTCTGTTTAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UL68	Myelin transcription factor 1-like protein OS=Homo sapiens OX=9606 GN=MYT1L PE=1 SV=3
P97500	Myelin transcription factor 1-like protein OS=Mus musculus OX=10090 GN=Myt1l PE=1 SV=3
P70475	Myelin transcription factor 1-like protein OS=Rattus norvegicus OX=10116 GN=Myt1l PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003980 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01530 all species →	zf-C2HC	Zinc finger, C2HC type	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036060 all species →	Homologous_superfamily	Zinc finger, C2H2C-type superfamily	Interproscan
IPR002515 all species →	Repeat	Zinc finger, C2H2C-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10816 all species →	MYELIN TRANSCRIPTION FACTOR 1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for aawi_s0097.g43.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.