Gene detail

Detailed information of aawi_s0097.g63.t1 in Acropora awi

Genomic Location: sc0000097_pilon:821697...847405
NR annotation: XP_044174169.1, E3 ubiquitin-protein ligase TRIM71-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aawi_s0097.g63.t1

TGATGAAAAAGAAAGCGAAGAAAGCGGGAAAGAAATGATCTTACTCCAATGACAACTAAGTTGAACTTGAATTTTTCCACTTTGGAAGGACACGAAAACAAAATAATGATGTCCTTACTTTGAGAATGGGACTGCCGCAAACTCAATTTACCTCGCTTGATACCTTCGTGGCAGCTCATAGTCCGCGGTGATTTTGCCAAGCAATACAAACATATATATTAATGGTGATGATCTTACCCTCTGTGTCTGCTTCAAGAGGGGAAAAAATGACACAATCATGGTACTCTTTAATGTACCAACCCTTGGAAGAAAGTTGATTTGGGAACCTTCAAGTTGGTTTTTAATGTTACACTCATGTGGATGTATTTTATTTATAGACACCAGACCATCTCCAGTGGCAAGTTTGGCGAAATCAATGCCAGCGTGGATTCAGATTCACCCATTCCAATCAGCGTACGGTAGGCTGCAAGTGTTTAGTTGCCATGGCGAACAAAAAGTACTACTGGTGGCAACATTTTGAGAAGGGTCGCCTATTTGGCGACTTCATGTTTTGGCCATTTGTTTTTTTCCCTCTTTGCATCTGTTCGTGACTGAAGCTGTTGTCCACAAAGTTTTTTTCGGAAGTAGCTTTCTCCGCAAATGCTCTTTTTATTATTCTCTGCCTGTTTGAAGACTCGTTAACTTCATAAAATATCACCCATATATGCGATTTTTTGCCATGCTTTTTTTGTACGCTTTCTTGTTTGACTCTATTCGACAGCAGTTTGCCATTCTTattgatttggaaaacgctgcaaaagaacgcaagttgagaatagttacagccgttgaattcaagaaacgaaaggcgcagaacaaggtgacaagaatcgccaaacttggtgaaagctgtatccaagttcaagaagaagccgcaagaataaagagcgagatacagcggtttactgacaatctcattgcagccattaaggcgaaaaagaacgacatctttgatgaggtagaaacgaaagcaaaacagtttctggagcgtctaggagagaaaaggaaggagattgaagaagaaatgaaaagggaccaaacagcaatcgaaaaaagccacatgattttaaagcgaagcacaagcgctctaatcatgcaaccaaatgatttcctagacgaactatttcgagaggaaggtgagcaggaagacacagatgaccttgacggcgaacaaatcgtggattttgtttttgaaagaaatgaagaattgtttaatgacgttcaagctaaaaaactgggatttttgaaaagaaaaactaacccgaaagagtcgacggttgagggaaaaggaatcagcgaaggaactgttggacttaaagccgatattgttgtgaaaacgcgaaacattctgggacaacaagtctacgataaaaataatcacgtaacaatggaaattagaaatcatgaaggacgtgactgttcaaccaaaccgcaaatccacgacaacaaggatggcagctataggatcagctactttgccaaagaaagcagaacatgtcaagcatctgtgaaagttaatggacaacatgtgcgtgacagtccctttaaaactgaattcaaacccagactgttcaaacccgtgttatcttttggaaaccaaggatcagctgatggaatgtttagtagaccttgggggatagcagtgaatgacaaagacgagattgcagttactgatcgtgataaccatcgcatacaaatatttaaaagtgatggtactcacttaagatcgtttggtagactaggtaatcagcagggacagttcaacaggccttctgggatagctttctataataataacattatagtgtcagacactggtaactatcgagttcaaatctttgatgatcagggacactatcttgatcagtttggagaaaagggaaaactgaattaccagattcactatcctcttgggctgtcaattgacagggatggcaacgttattgtcgctgatcgtgataacaaagcaatcaagatctttacgcttgatggtcgatttttgcgtagaatcggcgatgaaggttctttaataaatccctttcactgtatccaacacgacaactattttattgtatcagacaatggagaccattgtataaaagtttttgatgaacagggcaagtttctttatcaattcgggaggaggagggcttgggacggggacctagatcagcctcgctgcctgtctgtggacagagtaggacatctgttggtttgtggttcaatgaatcacggagtgcaggtgtttaaactcaacggggagttcgttacagggtttggaaaacatggtgaagtaggaggaaagatgaatcacccagtctccacagcaatccttagcaatggtagagtaattgtaatcgaatttggcaaccatcgagttcaggtttttgaatagatgaatagGTTCTTAACCCAACTGGAGTTCCACTCAAATGGCGTGACACTGCCTCTTTATTGTTCAGGCCAGTCTGTTTCCTGGGTTGGCTTGTCACTATATTTCGGTCGCACAAACGAACATTCTTTTACCTCGAGTCATGATCGACAACCCCAAAGAC

Protein

Uniprot

Gene family

Uniprot term	Description
Q5BIM1	E3 ubiquitin-protein ligase TRIM45 OS=Bos taurus OX=9913 GN=TRIM45 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001258	Repeat	NHL repeat	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12035	TRIM71; tripartite motif-containing protein 71	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala