Gene detail

Detailed information of aawi_s0099.g2.t1 in Acropora awi

Genomic Location: sc0000099_pilon:52806...58596
NR annotation: XP_044181965.1, rho-related BTB domain-containing protein 1-like [Acropora millepora]
Species Acropora awi · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

aawi_s0099.g2.t1

TGTAAATATCTTTTGGGCATGTTAAATCACTGCAAGCACCGAAAAAAGGCCGTGGCCTTCCTTCTTCGGTACAGATTTCCGCCATGGATACGAATTCTAGTCACTACTGGACGAACGCTTTGAAGATCGTTCTCGTGGGCGATACAAGGGTCGGAAAAACACGGCTGCTTGCTCGAGCTCACGAACTTTACGCGACTTTGCGCGACGATGGCTGCAGTTTCTCCCACAAACCTTTTGATCCAACTTTAACATACAGTGGAACGTCGTTTGTTACTTGCATAACAAACGTTGATACCGCAGATCTCGGAAATTATCAAACTAATATTTGGGACACTGGAGGATCTGGACTCTTCAATTTCCTGCGTCCATTGGCTTACATTTGCGCTGATGTCTTCATGTTGTGTTTTGATCTCACGAGTAGAGAGTCATTTGACAACTTGATAGAAAGATGGCTGCCCGAACTTCGAATGTATCAGCCCAAGACACCTATACTTATGGTTGGAACAAAGTATGATTTGCTAGATGGTGATGTAAGTTATTCCTCTGAGCATTCAATCCCCAGTTGCAAGGTGAAAGCAGTGGCTGACAGAGAGGGGTGCCTGTACCAAGAGACTAGTGCATTGACTGATCATCTTGTTGCTGATGCATTTGAAAAAGCTGTTAAGCTTGGACACAAAAAAAGAGAGGAAGAGGGTAAAAGGTCTCAGAGGTTAAAGGTTCTCAAGAGAGGATTTGACCCCACATGGATTCCACCAATCAGTTCCCCTCCAGAAATCAAGATTGATCCATCAACTTACATTACTGACTTCAAAAGATTACTTAACTCCGATATCAATGCAGATGTGCTCTTTAAATTTGAAGATGCCAACCAAAGCGTTTTTGCTCATGCAGTCATTCTATGGCTTACTCCATCCATTTTCAAAATCATTTTGGAAGATAAAATTGCCAGCAATAATTATTTTGAACAATTCAAGGAACTTTTTGAAATTTATAGAGTTAGTAGTGATGCAAATACTTCAAGAGAAGAATTAGTTGATCTAAAAACCTATCCTTGCATTAAAACTGTGATAGTTTTAAAGAAGTGGATTTCCAGAGAAACCTTTGTGACAATTTTAGAATTTATCTACACTGGGGTAGCAGGAATTTCAAAAGATACAGAACAAGAAGAACTCAAGCAACTGTTATTTGCCGCAGAGAAACTACAAATTCATTCACTTGCAGAAATTTGCAAGTATTTTTCAAATCTTGCAGAGCCAATAAAGGCTTGTAGTAGTCATGAGAAAATGCAACAACTAAATAATTCAGAAAAACAGCTGCAACCACCAAGCACACCAATGCACACTGTTCAACAGGGTTTCTTTTTGGACAAAGAGGAAGCAGTGTTTTCGGATGTGACATTCCTTGTTGAAGACACACTGATGTTTAGTGCAAGACAATTGACTAAGTGGTGTCTCTTCTACATGGCTTTAAACTACACAAGGTTTTGTGGAATAACGAAGGAGATGGACTCCTTTGTAAAAGACGATCAATCTTTCTTTGAAGAACATCGCTGGCCACCGAGAGAATTCTTGCGGGTTCTAGAGGGCTACAAGCTTAAAACAGAAAAGGCTGCGGTTAGAAGACGTTGCCCTCAAAAGGAGTCACGTGTGCCGTGTACCAAGTGTAGTGTTATGTAATTTCCTTCGTCGTGTCACGCGCGGTTGTTACTCAACAAGCGAATGGTCGCACCCTCGCGCGATCAGTTAGACAAGAACCCTCCTTCACTCCGAAGTCGGCTTTGATCAGGACAAACAATCGGTGCAACACCAAGAACAATGTCTCATATCAAATCATATTTTATTGGCACAAAATGTCAATGCCATTGTAACGCCATTTTTAATATAAATCGATTAACATAAATTTCAGGGAATTTATAAATACACTCTTCAACCAGAAAACAGCACTGTGTCTACAAATAAATTAAATTGAATTGAGTTAATTGGTAGTTGTACGTCGCAAGACAAGAGTATGGTTGGTTTCCTGTCAGGCTAACATCGTTAACACAGAACAACATGAAGCACCTTTATAAATTTGAACTTACTGAGAACAACTGTGAGTGTTACTTTTATAAATAGAGAAAACAAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P34147	Rho-related protein racA OS=Dictyostelium discoideum OX=44689 GN=racA PE=1 SV=2
Q68Y52	Rac-like GTP-binding protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RAC2 PE=2 SV=1
O82480	Rac-like GTP-binding protein ARAC7 OS=Arabidopsis thaliana OX=3702 GN=ARAC7 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009531 (this species only)
Transcription factor family	ZBTB · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00651 all species →	BTB	BTB/POZ domain	Domain	Interproscan
PF00071 all species →	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR003578 all species →	Family	Small GTPase Rho	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24072 all species →	RHO FAMILY GTPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0007163 all species →	Biological Process	establishment or maintenance of cell polarity	Interproscan
GO:0007264 all species →	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0008360 all species →	Biological Process	regulation of cell shape	Interproscan
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan
GO:0030865 all species →	Biological Process	cortical cytoskeleton organization	Interproscan
GO:0031410 all species →	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0032956 all species →	Biological Process	regulation of actin cytoskeleton organization	Interproscan
GO:0042995 all species →	Cellular Component	cell projection	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for aawi_s0099.g2.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.