Detailed information of aawi_s0107.g14.t1 in Acropora awi

Genomic Location: sc0000107_pilon:135026...148345
NR annotation: XP_029205144.2, lysine-specific demethylase 5C-like [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P29375Lysine-specific demethylase 5A OS=Homo sapiens OX=9606 GN=KDM5A PE=1 SV=3
Q3UXZ9Lysine-specific demethylase 5A OS=Mus musculus OX=10090 GN=Kdm5a PE=1 SV=2
P41229Lysine-specific demethylase 5C OS=Homo sapiens OX=9606 GN=KDM5C PE=1 SV=2
Gene familySubfamily
Transcription Factors FamilyARID

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02928zf-C5HC2C5HC2 zinc fingerDomainInterproscan
PF02375JmjNjmjN domainFamilyInterproscan
PF01388ARIDARID/BRIGHT DNA binding domainDomainInterproscan
PF00628PHDPHD-fingerDomainInterproscan
PF02373JmjCJmjC domain, hydroxylaseDomainInterproscan
PF21323KDM5_C-helLysine-specific demethylase 5, C-terminal helical domainDomainInterproscan
PF08429PLU-1PLU-1-like proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR004198DomainZinc finger, C5HC2-typeInterproscan
IPR003349DomainJmjN domainInterproscan
IPR019786Conserved_siteZinc finger, PHD-type, conserved siteInterproscan
IPR001606DomainARID DNA-binding domainInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan
IPR019787DomainZinc finger, PHD-fingerInterproscan
IPR036431Homologous_superfamilyARID DNA-binding domain superfamilyInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR003347DomainJmjC domainInterproscan
IPR048615DomainLysine-specific demethylase 5, C-terminal helical domainInterproscan
IPR013637DomainLysine-specific demethylase-like domainInterproscan
IPR047970DomainLysine-specific demethylase 5A, second PHD fingerInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10694LYSINE-SPECIFIC DEMETHYLASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000785Cellular ComponentchromatinInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0010468Biological Processregulation of gene expressionInterproscan
GO:0032452Molecular Functionhistone demethylase activityInterproscan
GO:0034647Molecular Functionhistone H3K4me/H3K4me2/H3K4me3 demethylase activityInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11446KDM5, JARID1; [histone H3]-trimethyl-L-lysine4 demethylaseEC:1.14.11.67
Chromosome and associated proteinsko03036deepkoala

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