Gene detail

Detailed information of aawi_s0113.g5.t1 in Acropora awi

Genomic Location: sc0000113_pilon:124983...149555
NR annotation: XP_029199710.2, EF-hand calcium-binding domain-containing protein 6-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

aawi_s0113.g5.t1

ATGTTGGAAAATCATGGCAACATCAGCCGCGCTTTTGTTGCCTTTGACACACGTGGTGATGGCTTTGTAACACTTGATGAGCTCAAACGAGTGTTGTTCAATTTTGCATTTCCGATGTCAGACAAGTTGTTTGTGGAGCTCATGAGCAGATGTGGGATACGTGCAAATCATAAGATACCATATGTTCAGTTTCTTGAGAAGTTTGAAGCACCAGTCACCAACAGTGAAGGCCAAACAATTCCCATCAAACCTAGCCACAAGTATAACCCAGTGCGTGAAGCGGAGGAAAATCTGATGCCGACGACAGAGGATATTTGGAAACTGCTACATGACAGAATTCTTAACAGTTTCTCATCTGTGAAGCAAGCATTCCTTGTTTTTGATGATAACAAAGATGGGCGTGTCACTAAACGTGACTTCAGACGTGTGCTGGAAAGTTTCTGTTTTCGAATGAGTCACCAGCAATTCCATGAGCTGATGGCCAAGATTGATCCCTATAACAAGGGATATGTCTCTTATTTGGATTTCTTGGACAGATTTGAACAAAGAGAAACAGAGGGTGCACACCCTTGGTTGATGTCGGATCATTCTCCAAAGAGTGTATCCCCTCCTGCTGTCTTGGCCTGGTCAACTGTGGAAGATATCTTGCAATCAAAGATCACTGATAACTGGAAGGCAATTGCTTCTGCTTATCTTGGAGTTGATACTGATAGAGACGGTTCCATTTCACGGAGTGAACTAAGGCAGCTGTTGGAAAGATTTTGCTTGCCCGTCTCAGATGATCATTTCGACCTCATGTGGAGTCGGTGCGATGAAAATGCTGATGGATCTATCGATTTTCAAGAGTTTCTTGGCAAATTGGGTGTGGATATCGTTGGAGGAGATATCAATGGCCTAAGTACAAGAATTCATGACGAAAACGAAGCAAACGTTCAGTTTTTGAAACAGGATCAAAATGCAAGACTAGAACTGGTAGATGAAAGGGCTCTCAACCTGACTGGCCAGAAATCAGCCAATGAATGCATGGAGATTCTTAAGGAGTATATCTCGCAGAGGTCAACTGACTTAAGGAAAACGTTTGTCAAATTTGATAGCAATGGTGATGGGAAAATTTCAAGAAAAGAATTTCGCATGGTCATGAATAGCCTTGGTTTGTACATGACTGATGACCAGTTTCGTATTCTCAGCGCTAGGCTTGGCTTTCACAGAGGGAAGCTCTCTTACATGGAGTTCCTGAATAATTTTCAGGATCGTCGTTCATTTGGAGTAGGAGAGAAGGTCACTGAATACTCAAGTCACAGGGTTAACCTTCCAATGCCTCAAGATGACTCTATGAAAGCAAGTGCTGTTGAAGCGAAAATGAGAACCAAACTTAGAGAAAATTTTCAGGACTTACGTGCAGCATTTCAGAAGATCGACTACGACCGCAATGGTTTCGTAACTAGACCAGAATTCAGGCGAATCTTAGACTCCTTCATGATCATGTTATCAGATGAAGAATTTGACAAACTCATGACAAGACTTGACATACAGAAAGGAGCAAGATTGAACTACAGGGAATTCTTAAAACGGTTTCAACACGTGGAAACTGTGGAAGATGGCCATCCATGGCTGTACTCAACTCACAGCTTCAATGAAACTCAAGATCTGACCTACTTGACTGCGGCACAAGCTGATGATGTCATCAAAAGAAAGGCCTGGGAACAGAACGAGGACTTAGCCAAAGCTTTTTTGGCTTTTGATCGTGATGGCAATGGAATCGTTACCAAGAAGGAACTGAGAAAAGTCCTATACAAGTACCAGATCCCTCTGAACAAGGAAGAATTTAAAAAGCTGTGGGACAAGTATGACACAGACCGCAATGGTTACGTAGACCATCAAGAGTTCTTGGCGAGATTAGGTGGGGAAATGAAGCCCGGTGACACACACGGCCCGAGTACAATGATAACCGAACAGAGTCACCAGGTTATGGAGAGCATGCACAGGAACCAACAGGACATGCACGTGGCTGCCACGTGGAATCAAGCCCAGGCAGTCTCATTCCTTTCCGCTCTGGAGGTTGAGCAGAGACTGAGGGATCGTTTTCGGGATGGATATGAAAGTTTGAGGAAAGCCTTTGAGACAGTGGATGCAAACAGAGATGGCTACATATCAAGACAAGAGCTGCAGAAGGTTTTGTTCGACTTTCATTACTTCCTGGATGATGTTCAGCTCAATATTCTACTCGACAGGTGCGGTTTGTCGCATAAAAACAAGCTGTCGTACGAGAAATTTCTCAGCGCTTTCCAGGACCATAGGCTTGCAGGATATGGCCGCGTTACTTTGGATGCTCCCCGCAAAGTTGCCACACCTGTGGTGTTTGAGAGGCACGATAACCTCGCTCCAGATGCAGCCATCATTAAACTGAGGGGCAAAATTAGCGAAAACCCAGAGACAATTCGAAGGGCTTTTGCCGCGTTTGACCGATACGGAAATGGACTGATATCAAAAGAAGACTTGCATCAAATAATCAACGCGTTCTGCTTTATCATGTCTGATAAACAATTCCAGGCATTGTTAAAGAAGATAAAAATTTCGGAAGGAGGATTCGTGTCTTATGAGGATTTTTTCAACAGCTTTCAGAAATCAGACACCGAGGAAAGTCTCAGGTGGCTGGAAAACCTGTATCCCTCTCCAAACAAACCTCCAAAAGCTGCTGAGCACGTCAGCAAGCATTCGCGTGGGTTGACCAACGCAGATGTGGAAAAGAAAGTTCGCGAAGTTGTCGTGGCAAAATTTTATAGCTTAGCTAAGGCATTCACGGACGGAGATCCTCGCCACACAGGTACAGTTGGTCCCAGTGCACTTCATGAAATACTCAATGAGCATGCGTTCCGCATGACTAGCGACCAGTTTAACCATATTTGGAATCAGCTCGACAAGAGCGCCGATGGAAAAGTGGATTATAGAGATTTCCTTAAGAGGTTTTCCACACGAACTGATGTTATCCGTGCTGTGTCTACCACGCCGCCACTCCGGATACGTGACATTAGGACGTCTTATGGGCCTGCAGGGTCACCTGTGAGGTCACCTGCTGTCTTAAGTCCATCACCAGAGTACCTTACCCCTCCCCCATCGGCCAGTGACGTCGAGAGAAAGATAAAGGATTTGATATGTCGTCGTTGGCAGCACATTCAGAAATCCTTCAGAAACACTGACAGTGGAAATAAAGGAGTAGTGAGCTTTGAACAACTAAGAGACATTTTGTTGAAGCATGATATCGAGCTAAGCCCGAGAGAGTTTCTATCTTTGTGGAGAAAACACTCTAACGAAGGAAAGGGAGGAATCGTTTACAAAGATTTCATGCGACACTTTGTATTGAATTTGAAATCTGGTGACGACCCACTCACCAGACCCAAGCTTCCGCCAAGCAAAATTCCGACAAGCCCCGGGGTAATGAGTGACAAACTTGTTGAATTGATGGCTGCTCTACGAGCTCCAGTGAGACGAGATTGGAAGGCCATGAGACGAGCATTTAGGGCATTGGACAAGTGTGGATCTGGCACCTGCTCACTTCTCCAGTTCAGGGAAATGATGCGAAAATTCAAGATTGATTTGAGCGAAGAGGACTACTTCCACTTGTTTTCATTTTACGATAACCTTTTAACGGGAAAAGTGTGTTACATTAGTTTCTTAAGAGCACACCTCGAGTAA

Transcript

aawi_s0113.g5.t1

ACAAAATGGCTACTCGCGACCAGGCAAGGGTTCTATTAAAGCAAAACAATTCGTCATTTCATTTGTTACTATATGTTTAGTCGAAATACAATGGCAAAAGTTGCAGTGGCTCCAGTAGTTCATAATTTTTCGGATCTACGCCCGTCTTCGCGCGCGCTGACAATCGTTCCTAGGCCAGCCTCTAGGAAGTCTAGTGTTCATGGAACATTTAGTGATCGTCCGCTTTCTCGAAGCAGTTCAAGAGCAGGAAACGATAGCGTTGATGCTCGACAGGCATTAAAGGGAAACTCGCCAAACGTTTTGATCCGGAGTCCTGGAAGGCGGGGATCTGAATTTTGTTGGGGGTCACCTCGTTCCCCAGACCCGAAGCTGAGCTTTATTGAAATCGAGTCACGGATGAGGGAAAAGATTCGAGTTAACTCTGCCGAGTTACGCCAGGCTTTCCAGACATTTGATTCAGAAAAGACTCATACTATAACCCAGAGTGAGTTCAAAAGGGCTCTGGAGTCCTTTTGCATTCCACTCACTGATGACCAGTTTGAACAAATCATAAGAAAGGTTGGTACAAATAGAGATGGAACTGTATCCTATTTGGAGTTTTTGGATAGGTACCACCAGAGAGGAGGTACACCAGATGGACTGCGCTTTCTTGGTAACTTGCACAGGTTTAATCAGACCAAATCTCCAAAAGGTGTGGCCTTGGATGATATTGAAGATCAGTTAAGAAAAAAGATGGTAGGTCAGTTACAAAGTGTCATGAAGGCATTAAGGCTTTTTGACTACAACAGAGATGGGAAAATTCAGCGGCATGAGTTGCGGCGGGTGATAGAAAATTTCTGCTTCAGACTGACAGATGAGCAATTTGACAAGTTATGGTCAAAATATGACATGACTCGTAATGGGCAGACTCTTGAATACATGGACTTTCTAAAACGTCTTGGAGTGAAAGCAAAGAGTGATATAAATAAAACAGGTGAAGACCAACAGCAAGTGAAACTTGCAGCAGTAAACAGCAGACCAATGGGATCAAGTCAAAGTGACAAGCACTCTACCCCAGTTGTTACTATAATGGACCTGGAGCAGAAGCTCAGGAAGAGGATGTTGGAAAATCATGGCAACATCAGCCGCGCTTTTGTTGCCTTTGACACACGTGGTGATGGCTTTGTAACACTTGATGAGCTCAAACGAGTGTTGTTCAATTTTGCATTTCCGATGTCAGACAAGTTGTTTGTGGAGCTCATGAGCAGATGTGGGATACGTGCAAATCATAAGATACCATATGTTCAGTTTCTTGAGAAGTTTGAAGCACCAGTCACCAACAGTGAAGGCCAAACAATTCCCATCAAACCTAGCCACAAGTATAACCCAGTGCGTGAAGCGGAGGAAAATCTGATGCCGACGACAGAGGATATTTGGAAACTGCTACATGACAGAATTCTTAACAGTTTCTCATCTGTGAAGCAAGCATTCCTTGTTTTTGATGATAACAAAGATGGGCGTGTCACTAAACGTGACTTCAGACGTGTGCTGGAAAGTTTCTGTTTTCGAATGAGTCACCAGCAATTCCATGAGCTGATGGCCAAGATTGATCCCTATAACAAGGGATATGTCTCTTATTTGGATTTCTTGGACAGATTTGAACAAAGAGAAACAGAGGGTGCACACCCTTGGTTGATGTCGGATCATTCTCCAAAGAGTGTATCCCCTCCTGCTGTCTTGGCCTGGTCAACTGTGGAAGATATCTTGCAATCAAAGATCACTGATAACTGGAAGGCAATTGCTTCTGCTTATCTTGGAGTTGATACTGATAGAGACGGTTCCATTTCACGGAGTGAACTAAGGCAGCTGTTGGAAAGATTTTGCTTGCCCGTCTCAGATGATCATTTCGACCTCATGTGGAGTCGGTGCGATGAAAATGCTGATGGATCTATCGATTTTCAAGAGTTTCTTGGCAAATTGGGTGTGGATATCGTTGGAGGAGATATCAATGGCCTAAGTACAAGAATTCATGACGAAAACGAAGCAAACGTTCAGTTTTTGAAACAGGATCAAAATGCAAGACTAGAACTGGTAGATGAAAGGGCTCTCAACCTGACTGGCCAGAAATCAGCCAATGAATGCATGGAGATTCTTAAGGAGTATATCTCGCAGAGGTCAACTGACTTAAGGAAAACGTTTGTCAAATTTGATAGCAATGGTGATGGGAAAATTTCAAGAAAAGAATTTCGCATGGTCATGAATAGCCTTGGTTTGTACATGACTGATGACCAGTTTCGTATTCTCAGCGCTAGGCTTGGCTTTCACAGAGGGAAGCTCTCTTACATGGAGTTCCTGAATAATTTTCAGGATCGTCGTTCATTTGGAGTAGGAGAGAAGGTCACTGAATACTCAAGTCACAGGGTTAACCTTCCAATGCCTCAAGATGACTCTATGAAAGCAAGTGCTGTTGAAGCGAAAATGAGAACCAAACTTAGAGAAAATTTTCAGGACTTACGTGCAGCATTTCAGAAGATCGACTACGACCGCAATGGTTTCGTAACTAGACCAGAATTCAGGCGAATCTTAGACTCCTTCATGATCATGTTATCAGATGAAGAATTTGACAAACTCATGACAAGACTTGACATACAGAAAGGAGCAAGATTGAACTACAGGGAATTCTTAAAACGGTTTCAACACGTGGAAACTGTGGAAGATGGCCATCCATGGCTGTACTCAACTCACAGCTTCAATGAAACTCAAGATCTGACCTACTTGACTGCGGCACAAGCTGATGATGTCATCAAAAGAAAGGCCTGGGAACAGAACGAGGACTTAGCCAAAGCTTTTTTGGCTTTTGATCGTGATGGCAATGGAATCGTTACCAAGAAGGAACTGAGAAAAGTCCTATACAAGTACCAGATCCCTCTGAACAAGGAAGAATTTAAAAAGCTGTGGGACAAGTATGACACAGACCGCAATGGTTACGTAGACCATCAAGAGTTCTTGGCGAGATTAGGTGGGGAAATGAAGCCCGGTGACACACACGGCCCGAGTACAATGATAACCGAACAGAGTCACCAGGTTATGGAGAGCATGCACAGGAACCAACAGGACATGCACGTGGCTGCCACGTGGAATCAAGCCCAGGCAGTCTCATTCCTTTCCGCTCTGGAGGTTGAGCAGAGACTGAGGGATCGTTTTCGGGATGGATATGAAAGTTTGAGGAAAGCCTTTGAGACAGTGGATGCAAACAGAGATGGCTACATATCAAGACAAGAGCTGCAGAAGGTTTTGTTCGACTTTCATTACTTCCTGGATGATGTTCAGCTCAATATTCTACTCGACAGGTGCGGTTTGTCGCATAAAAACAAGCTGTCGTACGAGAAATTTCTCAGCGCTTTCCAGGACCATAGGCTTGCAGGATATGGCCGCGTTACTTTGGATGCTCCCCGCAAAGTTGCCACACCTGTGGTGTTTGAGAGGCACGATAACCTCGCTCCAGATGCAGCCATCATTAAACTGAGGGGCAAAATTAGCGAAAACCCAGAGACAATTCGAAGGGCTTTTGCCGCGTTTGACCGATACGGAAATGGACTGATATCAAAAGAAGACTTGCATCAAATAATCAACGCGTTCTGCTTTATCATGTCTGATAAACAATTCCAGGCATTGTTAAAGAAGATAAAAATTTCGGAAGGAGGATTCGTGTCTTATGAGGATTTTTTCAACAGCTTTCAGAAATCAGACACCGAGGAAAGTCTCAGGTGGCTGGAAAACCTGTATCCCTCTCCAAACAAACCTCCAAAAGCTGCTGAGCACGTCAGCAAGCATTCGCGTGGGTTGACCAACGCAGATGTGGAAAAGAAAGTTCGCGAAGTTGTCGTGGCAAAATTTTATAGCTTAGCTAAGGCATTCACGGACGGAGATCCTCGCCACACAGGTACAGTTGGTCCCAGTGCACTTCATGAAATACTCAATGAGCATGCGTTCCGCATGACTAGCGACCAGTTTAACCATATTTGGAATCAGCTCGACAAGAGCGCCGATGGAAAAGTGGATTATAGAGATTTCCTTAAGAGGTTTTCCACACGAACTGATGTTATCCGTGCTGTGTCTACCACGCCGCCACTCCGGATACGTGACATTAGGACGTCTTATGGGCCTGCAGGGTCACCTGTGAGGTCACCTGCTGTCTTAAGTCCATCACCAGAGTACCTTACCCCTCCCCCATCGGCCAGTGACGTCGAGAGAAAGATAAAGGATTTGATATGTCGTCGTTGGCAGCACATTCAGAAATCCTTCAGAAACACTGACAGTGGAAATAAAGGAGTAGTGAGCTTTGAACAACTAAGAGACATTTTGTTGAAGCATGATATCGAGCTAAGCCCGAGAGAGTTTCTATCTTTGTGGAGAAAACACTCTAACGAAGGAAAGGGAGGAATCGTTTACAAAGATTTCATGCGACACTTTGTATTGAATTTGAAATCTGGTGACGACCCACTCACCAGACCCAAGCTTCCGCCAAGCAAAATTCCGACAAGCCCCGGGGTAATGAGTGACAAACTTGTTGAATTGATGGCTGCTCTACGAGCTCCAGTGAGACGAGATTGGAAGGCCATGAGACGAGCATTTAGGGCATTGGACAAGTGTGGATCTGGCACCTGCTCACTTCTCCAGTTCAGGGAAATGATGCGAAAATTCAAGATTGATTTGAGCGAAGAGGACTACTTCCACTTGTTTTCATTTTACGATAACCTTTTAACGGGAAAAGTGTGTTACATTAGTTTCTTAAGAGCACACCTCGAGTAAAGAGTCCATTTTTCGATTGATTCAGGGGATAATGGAAACGAAATATGATCATCGACTACGAAAAAAATTGAAAGCTCTTGCATCGCGTTTCTTTTCACATGCTGTACAGATATTGAACTACTGGACAATCAATGTTTAATTAACTTAATTTCTTACTGCCCTGTGGAAGCGATTCACTTCGTAAATTTAATAAATGTCATCGGAAGTGAATTCATAAATCGTGCTGAAAATAGTTTTTGTGCCGTTGTATTTATTCTATATGATTTGGGATGAATAAATAATAGCCTTTATT

Protein

Uniprot

Uniprot term	Description
Q5THR3	EF-hand calcium-binding domain-containing protein 6 OS=Homo sapiens OX=9606 GN=EFCAB6 PE=1 SV=1
Q5RE62	EF-hand calcium-binding domain-containing protein 6 OS=Pongo abelii OX=9601 GN=EFCAB6 PE=3 SV=1
Q6P1E8	EF-hand calcium-binding domain-containing protein 6 OS=Mus musculus OX=10090 GN=Efcab6 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08976	EF-hand_11	EF-hand domain	Domain	Interproscan
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF00036	EF-hand_1	EF hand	Domain	Interproscan
PF13202	EF-hand_5	EF hand	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR015070	Domain	DJBP, EF-hand domain	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR052603	Family	EF-hand calcium-binding domain-containing protein 6	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20875	EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K23851	EFCAB6; EF-hand calcium-binding domain-containing protein 6	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala