Gene detail

Detailed information of aawi_s0119.g36.t1 in Acropora awi

Genomic Location: sc0000119_pilon:416237...447189
NR annotation: XP_044177383.1, optineurin-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aawi_s0119.g36.t1

GTTAAGGAAGAGTTACAGCGACAGGAGGAAGAAGGAAAGTCCTTAATGCGACAGCTGAGTGAAAAACACAAGCAAGATAATTTTCTGTTGAAGGAAAAATTGCGAAGCAAGGAACTGGCGTTGGATTCAGCTCAAAACAACGAAGAGCACTTGAAAGTTCAAGTGACTCAGCTCATTCAAGAAAACGATGCATTGCTCATGGAATCCGATAGACTTAAGGAAGAGTTACAGCGACAGGAAAACATGTACCAAGAGCATCTTCACAAATTGACACTGGACAAGGACAACCAAAAGAAGAAGGCTGATGATAACAATAAAACCCTGAAGACGCAACTGACAAAGTCTGAAGCAGAAAATCAAAAGCTACGTACACAGATTGATAGTGACAATGCCTTACTTCGCGAACTTCAAACGAATATCGAGGTATTGCAAAAAAAGGAAGGCGAATTAAGGACTTATTTGAAGGAATCGGACGAGCTTGTGCAGAAGTTGAAAGAAGATGTTGCCATAAAGGAGAGAGAAATAACAGAATTGAAAGAGCAGATATACTATCATGATAAACAGCACGAGGAGCAATTCGAAATCCAAAATCATCAGCTGGATCAATACAAAAGAGACTTCGAGGCCGAACGAGCAGCGAGGGAGACACAACACGCAGAAATACTCCGCCTCCGCGAAGAAAAGGAACAACTTCAAGAACAGGTGGATCAATACGGCCATTCACAGATGCTGGAAATGCAGCGGAGGCATGTAAGTTACCAGCCAGAATCGCACGGACCCCAACCGCCGCGCACCTGGTTTGACTACCCATTGAGCTTCCTCACTGGTCGTGGTGGTGAGGAGGAGATGACCACAAGTCGCGAGAGCCGTAGACCAGAAGAACCCCCGGGTTTTAGACAGCAAGAAGGTCAGTGTTGCCCGGCTTGTGGAGGGATTTTTGGTGATTTTGGATCTCTACAGGTACATGCTCTCACGTGCAACGGAGTTCAGCCTCCGCCTAACCAGTACCAGTGTCCGTTATGCCAGGAGGTGTACCCCGACATAGACACCCTGGAAATTCACGCCCAAGATTGCTCAAATTTTGACTGAAATCCAGGCCTTGTCATTTGTATACTGAGCATCTGACTGATTGCCCTTTGACGAGGGTAATTTGCATTAATTTGACCCGTCAGGTCAGTACCCGATTTTAAAACGTTTCAAGTATGTCGAAGTTATCACGTCGTTAATATAAGTGCTTCTCCCCTCGATTTTAACATTTCAGTTTTTGGTGCCCCGCTGGGCCTTTTGTAGGACTGTGAAGCGTGCATATAGTTTTTCTTTGTAGCTATAAGATTGTAGTTAAAGAAAACCTACCAGAGTTTTTCAAGGGTCGAATATCGCTATCCACCTGGTAAACGAGAAAGCGATTTTACTAAAGCTACCCCGGTATTTTAATTTTCCAGAGAAGTTCTGCACAATAAACTACTAATATAATACCAAAGACACAGTTGCTTAGTTTTACACTTTGGCATTTTCGTCGGAGAAATCAAACAGTTCTGTAAATACTACGTAGAACAAGTACATTTTTGTATGCCAAGAATGTCATTCTATAAATAACCACGTATTTAGTAGGGTGTTATATCTAACATGCATTGAGTATCAGGCTTTTTCAATAGAGGATGCTGCTGTTTTTCCCAAATTTTTAAACGTGTTTCTGTTGAAATTCGTCTCCGTTTGCATGCAGTGTTTGGATCAAGTCTTTCCACGCCATTGCTGATTCGTGTCTGTGGTGTACCGAAGAAATATATACAATAAAGAATAACTTTTAATTTAATGAATATTTTATTTGAATGCAGAACTGCAAGTTCCCTGAAATCTCCGAAACGACCGTGTAGAAGAGTTACCCATATCATACGCGGTAGCCTGAATTTCAGCCGCCTCTTGCGCTCGCTAAACGTTTTTCTCCACACGAGTCAATATCAGCGAGCGGAGGAGGCGGCAGAAATTCAGGCTTCGTGCGTGCCGGATGGAAAATTACTCAATACGCTTATACGGGGCTAGTTTGGTTTAATCGagatcgtttccactgatctaaaataagactggatcgagcctctattgtttagaaagtgaagcgaaagaaagttagcagctatcatgttggcaccaccttgaaactccatcgtacatgttagcattgggaagaaaatcatttggatgccacccgcgaacgacatattatttcgctaaatattgaagaaggtatatttttcggaaacgttatttttttacctatggcatatagtaagctttacggcgaaagtgtttcaaacaagatggcgccgcttgtagcttcaattttgtggcagcgagaacaataggttgctcgatccagtattttttctgttagatcagtggaTCGTTTCGCCCATTTTATAATGTGCGCGGAGGCCTCTAGGATGCCCCCTATGCTTTCTTGCCACTGGCCAGAAAGCCTGCAGGAGGCAATCGCTGTTCTAAATCATTATCCtaccatgaacattaattgagttatggactggtaagtgtcatccaccctttgaacaactagggtcACGGCTTTTGAATTCATTTGTGGTTTTTTTGGGTTATTACTTATTTTTCAGGGGCTTTAACATGAACTTGTACATCACATGCTTGAAAAAAAAATAAAGAGTAGCTGTTCGT

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Alpha-Helix\|UBAN

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18414	zf_C2H2_10	C2H2 type zinc-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034735	Domain	NEMO, Zinc finger	Interproscan
IPR051301	Family	Optineurin/NF-kappa-B Essential Modulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31553	NF-KAPPA-B ESSENTIAL MODULATOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0070530	Molecular Function	K63-linked polyubiquitin modification-dependent protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0043122	Biological Process	regulation of canonical NF-kappaB signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07210	IKBKG, IKKG, NEMO; inhibitor of nuclear factor kappa-B kinase subunit gamma	-	Protein kinases	ko01001	deepkoala