Gene detail

Detailed information of aawi_s0121.g48.t3 in Acropora awi

Genomic Location: sc0000121_pilon:626296...633486
NR annotation: XP_015764554.1, PREDICTED: upstream stimulatory factor 1-like isoform X1 [Acropora digitifera]
Species abbreviation AAWI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

aawi_s0121.g48.t3

ccgacgacaattgttctttaggaaaggaatttgacagacaaatctaacgatagggtagggcatttgaacaccattttggcccgagggggaggggatttgaatgatccaatcttcagatattcaaatgcccgggctttgtcctgtgggggatgttgaagcttcgagttgatcggtgcatTATGTGTTCTCCGATAACTCGAACCTATTTTCTTAAACGATATGAAAACTGTCTTTACATTATTTAGCTTCTATCCCAGCTGAATCAGATGTGTAACAAGTACAATTTTTGGGATAGTCAGTATGGAAACAAGTATGGATTTTTCTTTTGGAGCTGTCGGTCATTCACATACAATGTCATTTTGTTTTGTGGAATTCATTTCTATTTTTTCTCAAGAATTCTCACAACCCGTAGCGCTCGTAATGAGAGACCCTAAAGATGGCTGAACATTTTCAACCAATCAGAATTAAGATAGCAAGTGCGGTGCTTTAGAAGTATACATCATACTTACTGCGCAAGGCGCACGTGAAGAAAAAATTGCGTTATTTCGTTATTTCGTTTCATCTAGCTCCGCCTCTTCCTCCACAATTCAAGTGACGGGAAATCACGTGAAACTCAGGGTTAGTTGAGGCATAGTAACTAATTCAAGGATTTATGAAGCGAAACGAAAAAATTGGTTGCTATTAGCTTAACTAAAGGAAAGAAATGAAATCAACCGCAGCACGTTGGTCGGGCATCTTAATGTTGTTATTTTAATTTTTATGAGGCCACTGAGAGTGGGCGATTGAAATATCGGTTCTGAAATTGTTCTCCTGTGGTTTTTGTGTCAATTATCAGAAATAAATTGTTATGTTTCGTCGTCTCTCTCTTCTTGTTCACATGACCAGCTTGTTTGACCCCATGACCACGGCTCCTCACTCCAACCTGGACATGCTCGACGGGTCTTTGGATCCAGACAAAAATTCACCACTGCAAGATCCCAAAAGTGCTGATCCAACACAGGTACCCGAGCCAGAAACGGTGACGGTGACGGTTTCTACTGTTTCAGACGAACAAGCCGCAGCTGCTCTTCACGTCGGAGAACAAGCAAATGCAGCGTTCGGAGACCCAGGAACGCTTCAGTTTCAGTACAGACCAGACGCAAATGGCGTTCAGGCGACGGGATTCAACGGGGGAACTCAACAGATTCGTGTGGTTCAAGTCCAGGCAGCTGATCCAACCTGTGATCGGGTAGATGCGACGAACGCAGCCTTCGCACCGCAAGTACAAACTGTTATACAAAGCCCATTTAGCAATGGTTCATCCCCAACACATGCCGTTGAAACGGAGACAGGAACCGAAGGACCTAGGTTTACGTACTTTCAACCAGCCGATGCGGCGGCTACGGCAGCAGTAGTTCAAGCTAGTGGCACGGACGGCCTTGATGCTACAAGTGCGTATACCGTGAGAAATATTCCTGTTTCTTTACAACAACCTTCTTCTCCTTCGCAAATGCCCATCACAATGGCTGAAGCACAGACCATAACGACCGTGGGAACAGCTGCAGGTGGGTTCTATGTTATGATGTCGCCTCAAGATGTAATGCCTGGCGGAAATCAACGAAACATAGCTCCAGCCATGACTCACAAAGTTCCCACGAAAGTGGATGCTCCAAGAACTGCTAGAGATGAGAAGAGAAGAGCAACTCACAATGAAGTTGAACGACGTCGTAGAGACAAGATAAACACATGGATAAACAAACTTGCTAAAGTCGTACCTGAGTGCGTTCAAGAGCAGTCTAAAGCAGGGCAGGTCGGTGGAACACAAGCTATTAGTAAAGGTGGAATTTTATCCAAGACAGTCGACTACATAAATGAGCTGAAATTACACAACACGCGACTGGTTGAAACAATAAAGGACACAGAGAGGCTGACTTCGGATACTGAGCTGTTGCGGCATCAAGTAGAGGAGCTGCGACAAGAGAATGCCTTGCTGAGGGCACAATTACAGCAGCATGGAATTGAATTGGCCACAGGTGGACCAGGTCCCCAAGTATGAAAGGTGGAATTGTGTTTGGAATCCAGGCATTGAGAAAGGGGTTTGGCAATGGATCTGGATAATTAGAATGCACAAGAGTTCAAAGTACAAGTCTGCGTACATTACCAATGTATCATTTGTTTGTTTTTTTTCTGCTGTGCGATACGCTACGAGCATGTTAATAGCAGAGACCCTTGTTCAACCAACAAGGGGGAACTGAAAACAATGTATTCCCAAAAGAAAGGGTAGGTGACCTTATCCATGCGTAACTCAGGCAAGAAAAGTGAGAAAACAACAATTATCTCACGCAATGCCTTTCAGAGAAGTGGCGTTGTTATGAAATTAAGAACTCTCACTAGCATTATTCATTTAAAATATCTCATTTATTAATATTGTTTAATGCACTAAGCTTATCCTGAGTTTTGTGTCATTTCCATGTATATTATTTTCACCTTTTGTTTGTTTATTAGTCCCACAGTGTGAGATGATTTTGGCTCTATTGTGTAAAAAAAAAACTTTCTTTTTGACAAGAATATCCAATATGCTTATTCTCTATCAACATACCTGTTACTATTTATCATTTTGTGCGTAAAAGTGTGTGTATATATATATAAAGTAGTGAGACAAAAAAGTTCAATGTAAATTGAACCAGTTTACAATATATATAGAAAGATATC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q61069	Upstream stimulatory factor 1 OS=Mus musculus OX=10090 GN=Usf1 PE=1 SV=1
Q6XBT4	Upstream stimulatory factor 1 OS=Bos taurus OX=9913 GN=USF1 PE=2 SV=1
P22415	Upstream stimulatory factor 1 OS=Homo sapiens OX=9606 GN=USF1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004363 (this species only)
Transcription factor family	bHLH · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR051732 all species →	Family	Upstream Stimulatory Factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46117 all species →	FI24210P1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09106	USF; upstream stimulatory factor	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.