Gene detail

Detailed information of aawi_s0122.g18.t1 in Acropora awi

Genomic Location: sc0000122_pilon:222636...226455
NR annotation: XP_029203020.2, retinoic acid receptor RXR-alpha-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aawi_s0122.g18.t1

CGCAGATCGGCAAAGAAAAAAAAAGGTGCGTTTTCTTGATGAGAACAATAAACGGTGTGTCATACCGGGAATTTGTGGCCAAATAAAGGAAAGAAATATAGCTAATGACGTCATCATCTGTGATGCTGCGTGACTCTAGTGAGAACCTCAAAAATTTCATAAGTTTCATTGTCTGTGAAAGTAGACATCTCTGTAGGGAGAAGTTCGACAATTTCATACAATTTCTCTTCAAAACATAAGTCACCCTTAAAATGGGAATTAAGTTATTTTTTCTAAACGGATGTCACTTTTCACAATTTCACGCTCTAAAGTGAAAGTTGTCAATACAAAAGCAGCCACTAAAGCACTCGAACTAATATGACTTCATAACGACGCAATTACGTTCAACCCTTAGTTAGAAACTAGGAACGTTTCAAGATGTCAGAAGAGGACGATGAGAGCGAAAAATGGTGTGCGGTTTGCAGTGACAGTTCATCCGGCTACCATTACGGAGCGAATACTTGTGAAGGATGTAAGAGTTTCTTCAAAAGGACAGTGCAGAAAAATTTAGGTGGTAAATACGAATGTGTAAAGTCCACAGATGACTGCTCCATTGACAAGGGGTCGCGCGCCAAATGCCAGGCTTGTAGGCTCAAAAAGTGCTTATCGGTCGGTATGGTGGCAGAAGGAGTAAGAAAGGAGAAGAAGCGTGGTGGAAGATCATTTTACCCTTTGAAGAAACAGAAAGTAATAATTGATGCTGAACAAACTCAAGCTTCTTCAGAACAAGATGTACCAAAAAAGATCACATATTGCTCTGAACTAATTGAAAATTTAATGAACAGCAGTCCATGTATTGTTCCACCAGGTCAACCTTCAACGGACTCACAAGATGCCGCACAAGAGAGCAGAGAAGGTCAACTGACAAGACTTTCAAATGCAATTACTAAAGAATTATACTTAATTGTTGAGTGGGCAAAACTGGTTCCAGGTTTTGATGAGCTTTGTAGAACAGATCAGATAGCTCTTTTGACTGCTGGCGGCATGGAACTCATTGTCTTTAGAGTGATTTACAGGTCTATTCCCTTTAAGGATTATGTCTATATGAACAGCACAACCCTTCTTCTGCGGGAAGACAGCTATGATGTGCTTAATAAAGAAATCGTTGACATGATTTTAGATGTAGTGGAGAGGCTAAAACCTCTTGCCATGGATGAGGTAGAATTTGCCTGCCTAAAGACGATTCTCCTAACTGATCCAGAGACCTCAGGACTTTCTGACAAACTTGCTGTTGCAACCCTTCAAGGATCATTTCTGGCAGCGCTGAAAGAGCACATGGAAGCCACATATCCTGATCAGAAAGGCCGCTTTGCAAAGCTTCTACTGCGGCTACCAGCCTTGCGCGATGTTTGTACCAAAGGTTATCAGTACTTCTTGCTGGTTCGAGCTAAGCTAGAAGGAGAAATACCAATGTCAACTCTTTTACAAGAAATGTTTGAGTCAGCAAGGTTTTAAAGAAAAGCAAGAAATAAAAACAGCTTGCATGGGAGTATCGGTAATATAGGAGCTGGTGAGCCAAAGATACAAGCCATGCTAATTCTACCCTAGCCCTTAGACCCTCTTAAGCACGATGTTTTTGATTATGCAGGGTAAGACGTACTGGAAACCAGTATTTGTGCCTCACTGACTTACATCTTTAGTGTGCTGGGTCACTGCTTTGCACATTGTGCATACCCCATGCAGTTAATGAAGTAATTTAAAGGAGAAATAACAAAGAAAATGTTATGTTGACTAAGGTATAGGAAAGCGTTAATTTGCTAAAGCGCATGGAGATTTGACTGTTATTTTAATGACTGTTGTGTGGAGGTTTTCTTATCTTTAGTCCTCAGTTTTGGGGAACCTTCACAAATATTGCTTTGAAAAATAAATTATTAGTATTTTTAAAGTTTTACTGCTCTTTTTAAAAATGATTATTTAAGGAATGGAGAGGAGAAACTGATTTCACAATTAACACTATCTCTGCAAAAGTTAAACTGTTGTTTTTTGTAACCTGTCAGGAGACACAGAAAGACAAGAGATGTGTATATAGTTTGTATTCATGTGTTGGCATGAACTCCTCTACCAGACACATACTTTGAACCATGCATTCAGATGTAAAAATCACTCAACAACAGAACCAAGTTGATTGCAACTGAAAATAAAACATAGTATCTTGCATTTCCATAAACTCAATCTACTTACTTTGTGCCCAGAAACAATGACGATTAATTAGATTAAAGAATGAAAACTGCATTGCACAGAATATGTCCAGGATTGCAAGTAATTCGATGCTTGCCAATTTTAATAAATGGCACAAATCCCC

Protein

Uniprot

Gene family

Uniprot term	Description
Q6DHP9	Retinoic acid receptor RXR-gamma-B OS=Danio rerio OX=7955 GN=rxrgb PE=2 SV=1
P51128	Retinoic acid receptor RXR-alpha OS=Xenopus laevis OX=8355 GN=rxra PE=1 SV=1
Q90416	Retinoic acid receptor RXR-gamma-A OS=Danio rerio OX=7955 GN=rxrga PE=2 SV=2

Gene family	Subfamily
Transcription Factors Family	Miscellaneous
Transcription Factors Family	NGFIB-like
Transcription Factors Family	SF-like
Transcription Factors Family	THR-like
Transcription Factors Family	GCNF-like

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00105	zf-C4	Zinc finger, C4 type (two domains)	Domain	Interproscan
PF00104	Hormone_recep	Ligand-binding domain of nuclear hormone receptor	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001723	Family	Nuclear hormone receptor	Interproscan
IPR001728	Family	Thyroid hormone receptor	Interproscan
IPR035500	Homologous_superfamily	Nuclear hormone receptor-like domain superfamily	Interproscan
IPR001628	Domain	Zinc finger, nuclear hormone receptor-type	Interproscan
IPR013088	Homologous_superfamily	Zinc finger, NHR/GATA-type	Interproscan
IPR050200	Family	Nuclear hormone receptor family NR3 subfamily	Interproscan
IPR000536	Domain	Nuclear hormone receptor, ligand-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48092	KNIRPS-RELATED PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0004879	Molecular Function	nuclear receptor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000790	Cellular Component	chromatin	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0034056	Molecular Function	estrogen response element binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08554	NR3B3, ESRRG; estrogen-related receptor gamma	-	Nuclear receptors	ko03310	deepkoala