Genomic Location: sc0000126_pilon:801413...827051
NR annotation: CAB4039167.1, Retrovirus-related Pol poly from transposon TNT 1-94, partial [Paramuricea clavata]
| CDS | ||||
| aawi_s0126.g35.t1 | ||||
| Transcript |
| aawi_s0126.g35.t1 |
| Protein |
| aawi_s0126.g35.t1 |
| Uniprot term | Description |
|---|---|
| P10978 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 |
| P04146 | Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3 |
| Q96AY4 | Tetratricopeptide repeat protein 28 OS=Homo sapiens OX=9606 GN=TTC28 PE=1 SV=4 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | Family | Interproscan |
| PF13374 | TPR_10 | Tetratricopeptide repeat | Repeat | Interproscan |
| PF00665 | rve | Integrase core domain | Domain | Interproscan |
| PF07727 | RVT_2 | Reverse transcriptase (RNA-dependent DNA polymerase) | Family | Interproscan |
| PF12770 | CHAT | CHAT domain | Domain | Interproscan |
| PF13424 | TPR_12 | Tetratricopeptide repeat | Repeat | Interproscan |
| PF00515 | TPR_1 | Tetratricopeptide repeat | Repeat | Interproscan |
| PF00098 | zf-CCHC | Zinc knuckle | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR019734 | Repeat | Tetratricopeptide repeat | Interproscan |
| IPR001584 | Domain | Integrase, catalytic core | Interproscan |
| IPR011990 | Homologous_superfamily | Tetratricopeptide-like helical domain superfamily | Interproscan |
| IPR013103 | Domain | Reverse transcriptase, RNA-dependent DNA polymerase | Interproscan |
| IPR012337 | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| IPR024983 | Domain | CHAT domain | Interproscan |
| IPR001878 | Domain | Zinc finger, CCHC-type | Interproscan |
| IPR036875 | Homologous_superfamily | Zinc finger, CCHC-type superfamily | Interproscan |
| IPR036397 | Homologous_superfamily | Ribonuclease H superfamily | Interproscan |
| IPR052699 | Family | Regulatory & Mitotic Spindle Associated | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10098 | RAPSYN-RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0015074 | Biological Process | DNA integration | Interproscan |
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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