Gene detail

Detailed information of aawi_s0154.g12.t1 in Acropora awi

Genomic Location: sc0000154_pilon:143690...160665
NR annotation: XP_029179380.2, sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like isoform X1 [Acropora millepora]
Species Acropora awi · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

aawi_s0154.g12.t1

ATGCTCCCATTGCGCGCTTGTTTTGTTTTGTCGACAATCCTAGTGGCAACTTTCTTTCCGAAAGCGTTGGGGCTTGACGGCCAACTTGAACTTGAGAATTTTCAAAGAAGCCACAATGATTCCATTTCAGATTTAATTTTCCTTCTTGATACCTCAGGAAGTTTGGGGTACTGGGATTCTGCCAGCCGATCATGGAAAAACGGTTTTGGCGATGAAAAAGTGTTCGTGAACTCATTACTAAGCCACATTCGCGTAAGTTTGCCAGCAACAAGAGTTTCTGTGATTTTATTTGGCACCGCAGCAACAATTGATATTAATTACATCAGCTATTTGGATGCAAGGAATCAAAAATGCAACTTCAAGAAAAGTTTTCAGGCTTTAAAATTTCGCTCAGGACTTACCAATATGCATGACGCATTTCAATATGCTGAGGACATTATTTTTGGAAGGTTAAGCGGAAGAAAGCGGCCCTTAAAACTAGCCAAGACGGCGGTATTTCTTCTCACAGACGGCATGTGGAACCGAGGAGGGGATCCATACCCCATCGCCAAGAGGCTGAAAGAAGGTCAGATTGAAATTTTCTCCATCGGAGTGACAAACGGTGTAAATATGAATGTTTTGACACAGCTCGCTACAGACAGCACCCATGCTTTCCATTACAGTTCATTTTCTCAGTTCAGAGAACTTGCAAATTATCTTCGTGGAGATCCATTCGAGAAAGACTGGGAACTCGATCAAACAAGAAGTCTTTGTGGGTCGTGCGACAATAAAGCCACTTGCGCATGCGGTCTTGTCAGTGGAGAATACAAGTGTTCATGTCCTAAAGGTTACTACGGCAGCGGGTACACTGGCGACTGCCATCTATGCCCTTATTCCTCATACAAAGACTTCATTGGTTACGCTCAGTCTTGTGATCCATGCCCACCCAACTCACGGCACAGCTTTATTGGGAGCAATAAACGTTCAGATTGCAAGTGTAACCTTGGATACGACGGCAATCCTGGAGGGAATATTGAATGCAGAATAAGGAGGTGTGACAAGATCCCAGTTCCGCCAAAGGCTTCACTGAAGGGTGGTGATTGCAACAGAAATTACCTGTCAACTTGCGAAGTTATTTGCCAGACAGGATATGAGCTGAGTGGGAATGGAAAGCGGCAATGCGTAATGAGTGCTGCAAACTTCCCAGTGTGGAGCGGAAGTGACGTCTTTTGCAATTTAATTCAGTGTCCTGCACTTGAAGTTACTAATGCCAGACCATCCTATGGAACATGCACAAAGAACGACTATTCATACCAAACTTCTTGCACTTTCACCTGTGCCGAAGGATACATTCTTCACGGCAGCGCTGTGCGAACATGTCAACAAGACAGAACTTGGTCAGGATCAAACACAACTTGTATACCGATTAAGTGTCCCATGCTGAACTCGATCTCACTCAGCCAAGTACGGCCACCTGAATGTGTGACTCAAGAATTACAGTTTGGTTCAATCTGTACATTTACGTGTCCGATGGGCTATCTCTTCGAGGCAGCACTCGCACAATCGGTGACAAGAATATGTCAAAAGAACGGTAATTGGACTGGAGAGTACAAGCCATGTGTCGACAGCCAACCACCCTCTATTACTTGTCCCCCTAACATACGAATCAACAACAGCCTTTACCAAGATCACGCAGTTATCTCGTGGGAAGAACCTGTATACCATGATAATTCAATAGGTGTGGACCCGCTGGCCGATGTTACCGTAACCAGTACCCATATGTCGGGGCAAAAGTTTCTGATTGGCAAATACGATGTTAAGTACACAGTGAGAGACGGAGATGGATTGACGGCCATCTGTTATTTTAAAGTGGAGGTAGTAGATAACGAGGCGCCTTACTACACTTCATGTCCTGGTGATAAAGTAGTCGAAACAGAGAAAGCATCAGAGCGAGTACAATGGACTATACCACAGTTTTTGGATAACTCCAACGTCCCCCCAACGGTTGAATTCAGCAAGAATCCTGGTTCTCAATTCTTTATCGGAGAAGTTATCGTATTTTATTTGGCAAGGGACCCTTCTGGAAACGTCAACGACAGCTGTGCATTCAAAGTCGAAGTTAAAGCTAAAGCTTGTCAAATGTACCCACCTCCTGAAAACGGAGCTTTAGCATGCAACGCATTTGGCGTCAGTAATCAATTTTGCCAAGTGAGTTGTAATGACCAGTATGATTTTGCCTTTCCACCTGCCATCACATACCTTTGTACTAACGGACTGTGGACAGCTTTGGGAGGTCAGCCACCTCCATGGCCCAGATGCTCTGTTCGCTATACGCCTGGAAAAGCTCGTATTGCTTTCTCGCCGCTTTTCTATTACTCTGGAGACTGCAGCTCCCAAGAAGCACAAGACCAAATCAAGCTAAACTTCATCAGAGTATTGAACTATCAATTTATCCCGTCAAGTCTTTGTAGAGACAAGCCTGCCGAGTGTCACGTTGGCAACGTTAATGTTTACTGTGGCACGACTAACGTCGCTAAGCGGCGACGTCGCAGTGTCGTGCGAGAGGTTTATCTCAAAGTTGACATAATAGCAGAAAAGCAATCAGATGGTGTATCTCAGACCGTAACTCAACTGGAAAATATATTAAACAATAACGCCAAACCCTTGATGGACCAGAAAGCAAAGACATTTGATTGGAGCCCACTGCGTTCCTCAACTGATCTTGAATATCAAAGGTACATGCTAAGTGATGCCGAGGCGTACTGTTCTGAAGCTGGTGCTGTAGTTGGTAAATGCAATTATTTGGAATCTGGCTGCGATGGTGTCACCAAGCCACATAGCATGTGCCAGTGCAATAAGGGTTCAGGACAAATAGAAAAGTGCATCCGCTGTCCAAAAGGATCGTACTATGACTCTTTGCAAGAAAACTGTATCCGTTGTTCAGCGGGCAGTTATCAAAGTCAAGAAGGAAGATTTGAATGTCTACCATGTCCAGATGGAACGTGGACCATCGGCAACGACACTGGAAACTTTACTTCTTGCCAAGAAAAATGCAAACCAGGGTACTTCTCGTCAAGTGGACTCTCCAGATGTTTTCCTTGCCCTAGTGGAACGTACGCTTCCGGGCTGATGAACACTTATTGCACCAGTTGTCCAGCGGGGACAACCACCATACTTCCTGCGGCTGGGGGAGGCGATGAATGCGGAATGAAGTGCGCCCCTGGCACATTTTCCAAGAATGGCGTAGAGCCCTGTATCCCATGTGCAAAGGGTTCTTATCAAAGCATCGTGGGAGCCTTGACTTGTGTAGAATGCATCGCTGGAAAGTCAACTTAtggtcctggtgctgatgctgctgacatgtgtgttgCAATTGATGACTGTGCGTCAAACCCATGTAACAATGGAGGCACATGCACTGACCTGAAGGATGACGTCAAATGTGACTGCATGGGCGGATATTCTGGAAAGTTCTGTGAAATAGAAAATGATGAGTGCTTGTCTGATCCTTGTTACCAGGGAGCCACGTGCGTTGACAAGGTGAATGGATTTGTGTGTGTCTGCGCAAGCGGCTTCAGTGGTAGTCAATGTGATATTCCTTCGGAAGTTTGCGGACCAAATGTGTGCCAAAATGGCGCAAAATGCGTTTCTCAGCCACCAGGTTTTGTTTGTGAGTGCACATCTGGTTATGTAGGGAAATTCTGTGAAGTAAAAATCGATCACTGCGTATCGTCGCCTTGTCGCAATCATGGAACATGCATGAGTCTAGTCGAGAGCTTTCAGTGTTCCTGTCCGTCTGGGTTTGAAGGAGTGCAATGTGAAATAGACATTGATGAATGTTCTTTAAGCCCTTGCATTAACAACGGAACATGTGTTGATGGTAAAAATGGGCACACATGCACCTGCCAAGCTGGTTTTACAGGAACCCAATGTGAGATTGATGTCAATGAATGCTTGTTGAATCCTTGCTCAAATGGAGGCCAATGTGTCGATAAGATCAATGGATATGAATGCATCTGTAAGCCAACTTATTCAGGACCCAATTGCACCAAAAAACTGTGTCACCGTTTTGATTTGTCATTCCCTTTTCGGGTGGCAACCTCATCTTCAAGTGTTGGAAACATTCCAGACATGAACGCTTTTACAATTGCCTTCTGGATGCGAACTCATGACACAGAGAACCCTGGGACACCAGTGTCCTACGCTAATATGGTAGGAGGGAAACTGCAGGATAACGCTCTTGTCATCCAAGATTATGGCGCCTTCGAGTTGCACATAAATAACAAGAAACTGTTTATTGGTGTATCGGTCAATGACGGAAGGTGGCATCACGTGGCCATCACGTGGGACAGTAGCGGTGGAAAATGGTTCTTCTACAAAGATGGGCAGGAAGTTAAAAGATACACTACGACATTTCAGTCCGGAGCTGTGATAAAAGGAGGTGGTGTTATGGTATTAGGACAGGAACAGGATTCCCTAGGTGGTTCTTTCAGCCCTGAGGAAGCATTTACTGGTGATCTGAGTCAGTTGAATGTGTGGAATAAGGTCCTATCGCCTCATGAAATCTACAACCTGGTGCGTAACTGCTTCACTGAACCTGGTAATGTGAAGGCTTGGGCTGACTTTCAAACAGGGCTGCAAGGAGTTTACGTCTTGACTAACAAATCCCATGCCTGCAATTTCTCCAGTCCCTTGAGGAGATTTTACGGAAAACACGACATGCGCCTCTCCAACAGCGATGACAAAGTTTTGACTGGGAAGACAGCTGAGCAGTGTGCTATTGAATGTGAACAGGAGGTCTTGTTTCCATGCAGGTCATTTGATTATGACCGGGCCAATAGCAAGTGTTATCTTAGTAGAGCGGACTTAGAAGATTCTGTAGTATCACAAGAGAATGGCTTCGACTTCTATCAGATGAGCTGCACTGAAGCTCTTGGTGTTCAAAGTAAAGCCATCCCTGATTCCGCTATGACAGCCTCGTCTTCACTAAGCTCGATAAGTCAGCCACATGTGGCGCGACTGTACGCACCCCAAGCCAGCGGTATTCAAGGAGTGATTGACAGCAGAGGAGGATGGAGCCCACACTTAATTGACCAGAAGCAATATTTACAGATAAACTTTGGGGATTTGTATAAAATAACGGGCGTAGCCTCTCAAGGTGGCGACGGCTTATCAGAATGGGTAACGTCATATAAGCTACAATACAGTGTGGATGGAAGGATGTGGATGTATTACGCACGGACCCTGTCAGGAAACACAGATAGTGACACAGTTGTAAAGAGAGATTTGCATGCATTCAGGGCACGAATGATCCGATTCAGACCCCAGACATGGAGCGGAAAGATAACATTGAGAGTTGAGGTGTTTGGATGCTTAGCAGACCCAATACCTCCACCACCATCTATATCAGGTGCGTCAAAGTTTCCCTTTTTAATTGGATAG

Transcript

aawi_s0154.g12.t1

GTTCAGTGATTTATATAAAACGTCGCATTTACAGAGAACAACTTCAACTATCCCTGTGTTTGCGCAACTGTTAAAGGCGTGCGAATTACCCATCTGCTGTCATCAATTATGAAACACAACGGCTAAAATGCAAGGACACCTTGGAGACTCATAGTCGTCACAAAATGCTCCCATTGCGCGCTTGTTTTGTTTTGTCGACAATCCTAGTGGCAACTTTCTTTCCGAAAGCGTTGGGGCTTGACGGCCAACTTGAACTTGAGAATTTTCAAAGAAGCCACAATGATTCCATTTCAGATTTAATTTTCCTTCTTGATACCTCAGGAAGTTTGGGGTACTGGGATTCTGCCAGCCGATCATGGAAAAACGGTTTTGGCGATGAAAAAGTGTTCGTGAACTCATTACTAAGCCACATTCGCGTAAGTTTGCCAGCAACAAGAGTTTCTGTGATTTTATTTGGCACCGCAGCAACAATTGATATTAATTACATCAGCTATTTGGATGCAAGGAATCAAAAATGCAACTTCAAGAAAAGTTTTCAGGCTTTAAAATTTCGCTCAGGACTTACCAATATGCATGACGCATTTCAATATGCTGAGGACATTATTTTTGGAAGGTTAAGCGGAAGAAAGCGGCCCTTAAAACTAGCCAAGACGGCGGTATTTCTTCTCACAGACGGCATGTGGAACCGAGGAGGGGATCCATACCCCATCGCCAAGAGGCTGAAAGAAGGTCAGATTGAAATTTTCTCCATCGGAGTGACAAACGGTGTAAATATGAATGTTTTGACACAGCTCGCTACAGACAGCACCCATGCTTTCCATTACAGTTCATTTTCTCAGTTCAGAGAACTTGCAAATTATCTTCGTGGAGATCCATTCGAGAAAGACTGGGAACTCGATCAAACAAGAAGTCTTTGTGGGTCGTGCGACAATAAAGCCACTTGCGCATGCGGTCTTGTCAGTGGAGAATACAAGTGTTCATGTCCTAAAGGTTACTACGGCAGCGGGTACACTGGCGACTGCCATCTATGCCCTTATTCCTCATACAAAGACTTCATTGGTTACGCTCAGTCTTGTGATCCATGCCCACCCAACTCACGGCACAGCTTTATTGGGAGCAATAAACGTTCAGATTGCAAGTGTAACCTTGGATACGACGGCAATCCTGGAGGGAATATTGAATGCAGAATAAGGAGGTGTGACAAGATCCCAGTTCCGCCAAAGGCTTCACTGAAGGGTGGTGATTGCAACAGAAATTACCTGTCAACTTGCGAAGTTATTTGCCAGACAGGATATGAGCTGAGTGGGAATGGAAAGCGGCAATGCGTAATGAGTGCTGCAAACTTCCCAGTGTGGAGCGGAAGTGACGTCTTTTGCAATTTAATTCAGTGTCCTGCACTTGAAGTTACTAATGCCAGACCATCCTATGGAACATGCACAAAGAACGACTATTCATACCAAACTTCTTGCACTTTCACCTGTGCCGAAGGATACATTCTTCACGGCAGCGCTGTGCGAACATGTCAACAAGACAGAACTTGGTCAGGATCAAACACAACTTGTATACCGATTAAGTGTCCCATGCTGAACTCGATCTCACTCAGCCAAGTACGGCCACCTGAATGTGTGACTCAAGAATTACAGTTTGGTTCAATCTGTACATTTACGTGTCCGATGGGCTATCTCTTCGAGGCAGCACTCGCACAATCGGTGACAAGAATATGTCAAAAGAACGGTAATTGGACTGGAGAGTACAAGCCATGTGTCGACAGCCAACCACCCTCTATTACTTGTCCCCCTAACATACGAATCAACAACAGCCTTTACCAAGATCACGCAGTTATCTCGTGGGAAGAACCTGTATACCATGATAATTCAATAGGTGTGGACCCGCTGGCCGATGTTACCGTAACCAGTACCCATATGTCGGGGCAAAAGTTTCTGATTGGCAAATACGATGTTAAGTACACAGTGAGAGACGGAGATGGATTGACGGCCATCTGTTATTTTAAAGTGGAGGTAGTAGATAACGAGGCGCCTTACTACACTTCATGTCCTGGTGATAAAGTAGTCGAAACAGAGAAAGCATCAGAGCGAGTACAATGGACTATACCACAGTTTTTGGATAACTCCAACGTCCCCCCAACGGTTGAATTCAGCAAGAATCCTGGTTCTCAATTCTTTATCGGAGAAGTTATCGTATTTTATTTGGCAAGGGACCCTTCTGGAAACGTCAACGACAGCTGTGCATTCAAAGTCGAAGTTAAAGCTAAAGCTTGTCAAATGTACCCACCTCCTGAAAACGGAGCTTTAGCATGCAACGCATTTGGCGTCAGTAATCAATTTTGCCAAGTGAGTTGTAATGACCAGTATGATTTTGCCTTTCCACCTGCCATCACATACCTTTGTACTAACGGACTGTGGACAGCTTTGGGAGGTCAGCCACCTCCATGGCCCAGATGCTCTGTTCGCTATACGCCTGGAAAAGCTCGTATTGCTTTCTCGCCGCTTTTCTATTACTCTGGAGACTGCAGCTCCCAAGAAGCACAAGACCAAATCAAGCTAAACTTCATCAGAGTATTGAACTATCAATTTATCCCGTCAAGTCTTTGTAGAGACAAGCCTGCCGAGTGTCACGTTGGCAACGTTAATGTTTACTGTGGCACGACTAACGTCGCTAAGCGGCGACGTCGCAGTGTCGTGCGAGAGGTTTATCTCAAAGTTGACATAATAGCAGAAAAGCAATCAGATGGTGTATCTCAGACCGTAACTCAACTGGAAAATATATTAAACAATAACGCCAAACCCTTGATGGACCAGAAAGCAAAGACATTTGATTGGAGCCCACTGCGTTCCTCAACTGATCTTGAATATCAAAGGTACATGCTAAGTGATGCCGAGGCGTACTGTTCTGAAGCTGGTGCTGTAGTTGGTAAATGCAATTATTTGGAATCTGGCTGCGATGGTGTCACCAAGCCACATAGCATGTGCCAGTGCAATAAGGGTTCAGGACAAATAGAAAAGTGCATCCGCTGTCCAAAAGGATCGTACTATGACTCTTTGCAAGAAAACTGTATCCGTTGTTCAGCGGGCAGTTATCAAAGTCAAGAAGGAAGATTTGAATGTCTACCATGTCCAGATGGAACGTGGACCATCGGCAACGACACTGGAAACTTTACTTCTTGCCAAGAAAAATGCAAACCAGGGTACTTCTCGTCAAGTGGACTCTCCAGATGTTTTCCTTGCCCTAGTGGAACGTACGCTTCCGGGCTGATGAACACTTATTGCACCAGTTGTCCAGCGGGGACAACCACCATACTTCCTGCGGCTGGGGGAGGCGATGAATGCGGAATGAAGTGCGCCCCTGGCACATTTTCCAAGAATGGCGTAGAGCCCTGTATCCCATGTGCAAAGGGTTCTTATCAAAGCATCGTGGGAGCCTTGACTTGTGTAGAATGCATCGCTGGAAAGTCAACTTAtggtcctggtgctgatgctgctgacatgtgtgttgCAATTGATGACTGTGCGTCAAACCCATGTAACAATGGAGGCACATGCACTGACCTGAAGGATGACGTCAAATGTGACTGCATGGGCGGATATTCTGGAAAGTTCTGTGAAATAGAAAATGATGAGTGCTTGTCTGATCCTTGTTACCAGGGAGCCACGTGCGTTGACAAGGTGAATGGATTTGTGTGTGTCTGCGCAAGCGGCTTCAGTGGTAGTCAATGTGATATTCCTTCGGAAGTTTGCGGACCAAATGTGTGCCAAAATGGCGCAAAATGCGTTTCTCAGCCACCAGGTTTTGTTTGTGAGTGCACATCTGGTTATGTAGGGAAATTCTGTGAAGTAAAAATCGATCACTGCGTATCGTCGCCTTGTCGCAATCATGGAACATGCATGAGTCTAGTCGAGAGCTTTCAGTGTTCCTGTCCGTCTGGGTTTGAAGGAGTGCAATGTGAAATAGACATTGATGAATGTTCTTTAAGCCCTTGCATTAACAACGGAACATGTGTTGATGGTAAAAATGGGCACACATGCACCTGCCAAGCTGGTTTTACAGGAACCCAATGTGAGATTGATGTCAATGAATGCTTGTTGAATCCTTGCTCAAATGGAGGCCAATGTGTCGATAAGATCAATGGATATGAATGCATCTGTAAGCCAACTTATTCAGGACCCAATTGCACCAAAAAACTGTGTCACCGTTTTGATTTGTCATTCCCTTTTCGGGTGGCAACCTCATCTTCAAGTGTTGGAAACATTCCAGACATGAACGCTTTTACAATTGCCTTCTGGATGCGAACTCATGACACAGAGAACCCTGGGACACCAGTGTCCTACGCTAATATGGTAGGAGGGAAACTGCAGGATAACGCTCTTGTCATCCAAGATTATGGCGCCTTCGAGTTGCACATAAATAACAAGAAACTGTTTATTGGTGTATCGGTCAATGACGGAAGGTGGCATCACGTGGCCATCACGTGGGACAGTAGCGGTGGAAAATGGTTCTTCTACAAAGATGGGCAGGAAGTTAAAAGATACACTACGACATTTCAGTCCGGAGCTGTGATAAAAGGAGGTGGTGTTATGGTATTAGGACAGGAACAGGATTCCCTAGGTGGTTCTTTCAGCCCTGAGGAAGCATTTACTGGTGATCTGAGTCAGTTGAATGTGTGGAATAAGGTCCTATCGCCTCATGAAATCTACAACCTGGTGCGTAACTGCTTCACTGAACCTGGTAATGTGAAGGCTTGGGCTGACTTTCAAACAGGGCTGCAAGGAGTTTACGTCTTGACTAACAAATCCCATGCCTGCAATTTCTCCAGTCCCTTGAGGAGATTTTACGGAAAACACGACATGCGCCTCTCCAACAGCGATGACAAAGTTTTGACTGGGAAGACAGCTGAGCAGTGTGCTATTGAATGTGAACAGGAGGTCTTGTTTCCATGCAGGTCATTTGATTATGACCGGGCCAATAGCAAGTGTTATCTTAGTAGAGCGGACTTAGAAGATTCTGTAGTATCACAAGAGAATGGCTTCGACTTCTATCAGATGAGCTGCACTGAAGCTCTTGGTGTTCAAAGTAAAGCCATCCCTGATTCCGCTATGACAGCCTCGTCTTCACTAAGCTCGATAAGTCAGCCACATGTGGCGCGACTGTACGCACCCCAAGCCAGCGGTATTCAAGGAGTGATTGACAGCAGAGGAGGATGGAGCCCACACTTAATTGACCAGAAGCAATATTTACAGATAAACTTTGGGGATTTGTATAAAATAACGGGCGTAGCCTCTCAAGGTGGCGACGGCTTATCAGAATGGGTAACGTCATATAAGCTACAATACAGTGTGGATGGAAGGATGTGGATGTATTACGCACGGACCCTGTCAGGAAACACAGATAGTGACACAGTTGTAAAGAGAGATTTGCATGCATTCAGGGCACGAATGATCCGATTCAGACCCCAGACATGGAGCGGAAAGATAACATTGAGAGTTGAGGTGTTTGGATGCTTAGCAGACCCAATACCTCCACCACCATCTATATCAGGTGCGTCAAAGTTTCCCTTTTTAATTGGATAGGAAACTCTCGGGATTTTAATTTCATAACTTTAGGTTTTAATGCAAGCATTTCACTGCTGATTTCATCTTCGGAGTGTGGCTACTGGTTCTTTTTTTAATCACAACCGTTGACTTTCACCAAATTTTAGTCGATCTGAAATTTTTCCTGTAGAATATTATATTTAATTATCGGAATACTGTCGTTTTATACGACGTTCGCCTTTGGAGCGATATATATAACCATGATTGAGAGAATAGCTATTTAGTATAGGTAATCTAATGAAGCTACGGGAAAGTATCTGTTCGGTGTATTAGCCATAGCGGTATACCCCCAAAAAATATTTTACAATAGACAAGAAAGAAGGTTTGAAACTCTGTACAGGATTCGTTTGAATTTCTTTCCAATTAAAGTTGAAAAAAAACT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A1D5NSM8	Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Danio rerio OX=7955 GN=svep1 PE=1 SV=1
P0C6B8	Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Svep1 PE=1 SV=1
A2AVA0	Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Mus musculus OX=10090 GN=Svep1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000607 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF07699 all species →	Ephrin_rec_like	Tyrosine-protein kinase ephrin type A/B receptor-like	Domain	Interproscan
PF02494 all species →	HYR	HYR domain	Domain	Interproscan
PF00084 all species →	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan
PF12661 all species →	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan
PF00354 all species →	Pentaxin	Pentaxin family	Domain	Interproscan
PF00092 all species →	VWA	von Willebrand factor type A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001759 all species →	Family	Pentraxin-related	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan
IPR003609 all species →	Domain	PAN/Apple domain	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR011641 all species →	Domain	Tyrosine-protein kinase ephrin type A/B receptor-like	Interproscan
IPR003410 all species →	Domain	HYR domain	Interproscan
IPR000436 all species →	Domain	Sushi/SCR/CCP domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR051022 all species →	Family	Notch Signaling and Cell Fate Determination	Interproscan
IPR013032 all species →	Conserved_site	EGF-like, conserved site	Interproscan
IPR006558 all species →	Domain	LamG-like jellyroll fold	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24049 all species →	CRUMBS FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007157 all species →	Biological Process	heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0032991 all species →	Cellular Component	protein-containing complex	Interproscan
GO:0045197 all species →	Biological Process	establishment or maintenance of epithelial cell apical/basal polarity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for aawi_s0154.g12.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora awi tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora awi, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →