Gene detail

Detailed information of aawi_s0158.g22.t1 in Acropora awi

Genomic Location: sc0000158_pilon:230273...244665
NR annotation: XP_029193108.1, RNA binding protein fox-1 homolog 3-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aawi_s0158.g22.t1

CGGGATTCTGGATGGTTTGATAAGTTGTCAGACAGGAAATTTCCTTTTTATTCGTTATATTTTGCAGTGGCTAATAGCGCATTTTTGTAAAGAAATCAATGGAAAAACAAGGAACCACTTCAGTGTCCTCTGAGGTTGGTTCATCGGTTAATGGATCCGCGGAAAAGCCGCATGAAACGGTCAGCAATGGTGTCCAGTACACTCATCCTATAGCTGTCCAACCCTATGCTGAAGTCACTGTACCACAGCCTATAGATGCAACACAGCAATTTCAGCTGCAGGCCCAGGCTCATCAGCTTCAAACAACAGAAGTTCTCATACAGAATGGTGACACAGGACCCAAGAGATTACATGTCACCAATATACCATTTAGATTTAGGGATCACGATTTAGCTCAGATGTTTGGGCAATTTGGAAATTTAGCAGATTGTGAGATAATCTACAATGAACGAGGGTCTAAGGGTTTTGGATTTGTCACTTTTGTGAATTCTGCAGATGCACTGAAAGCAAGAGAAAAGCTTAATGGGACTATAGTTGATGGACGGAAAATAGAGGTTAACAATGCAACCCCTCGACCGCACGTCAAAAAAAGTCCGGGCCAAAATCGAGGACCCTATACAAATGGTGTTTCTTTCCGTGGCATGAGAGGTGTTCGCCGCCCATCTCCTGTCAACAAATTTAGTACTCGAACAATACAACCCTCATCTGCAGTACCAACATTTAATGGCGCGTATACTGGAACATATGACGGTTATGAACAGACATATGGCGCCAGAAGAATAGGAAATTTTACGGGATATGAAACAGCAGGCGTGGCCGCAGCGCCTTACGGCGGTGGATATGGCCCGACTAACACCTATGCTGCTTCAGCGCCGGCTTATCGGCCAGTGGCTCCACCCCAGGCCCCACCAACAGGCTACACAACAGGGTACAGATATGCGCCGTATTGATTACGTGACAACACACCTTGACACATCCATGCACCACGTACCATACCATCCAAGATCACAGATTAGCAAGACTCCAGCGAGTAGAAAATGTTCATTTCCTTCAGGAAAGAACCCTTGATTCATTATGTATGAATACGTCATCGTTAACATTTAATTCCTTTTGGCAATTTTATGGAAAGTAACATTTCAAGAGCATCGGTCGGAAGATTTGCTACAAGGATCATTCTATCACGATACGACGTTAAAATATCGTAGACTCCAAAATGTGCCATTCTTTTTGGTTGCCAACGATTACATCCATGATTTCCGTAGCATGAACAGTTGTTTGTGTTTTGATTTGTCAGAAGCATAAAAATATGGCTCATAGAGGACGAAAAAGCTATCCTAATTCTTGGAATATACGAGTTGAGTTTCGTTTACTTTTAGTTGGTTATATGCTTAATGCTAACCTACATATAGAACAAAAACTAATGTTAGCCGTTGATTAGAATTGTTTTGTTCAGACCTTATGGTCATTACGTGAGCATGACGTCTTGAAAGGAAAGGTTTGGTACCTGAGATGTCCTCAACTTCAAATTAGTGTGTTAGTTTTCCAAATGAAAATGGTGTTCTACTTGACGCGCCATCAAACAAAGCCGTACTGTGGCTCTCTAATGCGTTCATATATCGTTCAttagtaaaatccaactagtggtctatcatcaatgctgcgttctgattggttgagctactagtaggctatatgttatagcccactagtagcgaaatttgtaatgttttggcggcaaaaaaggattgatgtcctgctttaacttgcgaaagatgtttagtctcgatatttttttgaccaactagttggattttactaaaacaattattcctctcgccctcatagcctatcagtcaatagcccattcggactcgaggaataattgttaaataCTCAGGGAGCTTCAGGAAAACCACACGCACGACCTTccaggtgatctggtgacgtaatttggaggactgggaCGAACAATTTTAACGCCGTATCCCACAACCGCGCGCGGCCTTATTTTCGAATTCAACATGGCAGAGGTGAGGTTAGAGCTCGTCGGGTCTACTTGAATGTTCATTCAGTAACAGGAAATGTGGTAGACACGGGATGATCTGTTGAGTTTTGGCCATGGAAATGCTGCAGGgagtttggaaacaacacctaaggccgcgcgcgtttgtgggatacggcgttaaaatttttcttcccagtcctccaaattacgtcaccagatcacctgCTTAAGAATGCACTCTAAACTCTAAGGGGTTGAATAGTCACAGGAGCTCATAAGTAGAAAcaaccttgtgccaagaaaaaatatttttaaaacgtctttttattgtgatggcctcgcaggtcggcagataacgcgaggcaccattgtcattactcttctttaattgggttgatagccgttctaaaagtaaatcatctcagggcattgttgacttcaaaccccattatggcagataaaggctcctTCGACCCATGGGCTCCTGGCAGACATTAGCACTTTTCTACCTTTTGTAGTCTTTGAAAATGTGGCCAGTGCATCCGAGGAGGCTAGCTCTTTTTTGAGTTTTTGGCAACACTTTTTTCCTGGTTGCTCAACTCTACTGGCACCTTTTGCAGCTACAAGCTGTCTCGTTACATTCTACTTCATTTCCTCTCTTAGCCATTGTTTATCTGATCGAGATTAAAGCGCATTTAGTGCCGAATTTTTGACGATTCTGAAATTTGGGTGATGCTGAAGTTTCGAAGTCAGCAATGTAGTTGCCATCGGCATTTTCTAATTTAGTATTTACCCCTTGGGGTAGGAACACTCTTCATAGATAGGCAAACTACTTTGCATTTTGTACAGAAGTGTAAATTACACGTATACCTTTGAAATAATTGTAAATGTAGAATTTCTGAGACACGAACAACATAAAGTAATATAAAAATGAATCGTTTTG

Protein

Uniprot

Uniprot term	Description
A6NFN3	RNA binding protein fox-1 homolog 3 OS=Homo sapiens OX=9606 GN=RBFOX3 PE=1 SV=4
Q8BIF2	RNA binding protein fox-1 homolog 3 OS=Mus musculus OX=10090 GN=Rbfox3 PE=1 SV=2
Q95KI0	RNA binding protein fox-1 homolog 1 OS=Macaca fascicularis OX=9541 GN=RBFOX1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034237	Domain	FOX1, RNA recognition motif	Interproscan
IPR047131	Family	RNA binding protein fox-1 homolog 1-like	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15597	ATAXIN 2-BINDING PROTEIN 1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0000381	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007399	Biological Process	nervous system development	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan