Gene detail

Detailed information of aawi_s0181.g37.t1 in Acropora awi

Genomic Location: sc0000181_pilon:483463...493069
NR annotation: XP_029187427.2, exonuclease 1-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aawi_s0181.g37.t1

AAACCACGAGCAGTGAATTATCCTGATTTCTGCTTATATGCTTTTAAAGGAAGGAGAACCTTATAAAACTATTGTTGAATTCGTTTTCAAGGAGAATGCAAGCTTGTGAAAACTAGTGTTTGAAGTTCTATCCCATTTGCAATTGATATCGCGTTGCAATATTGGTGCTGTGAGTATTTAAACACGCTGATGCAATTCGAATTGCTGTAAAGACAGATTACTTGTCGTAGTTTTCGGAGCAAAGAGATCTTAAAATGGGAATTCAAGGGCTACTTCCCTTATTGAAACGGATACAAAAGCCTGTCTCGATCGCTGAACATTTTGCCGGCCAAGTGATTGGGGTGGACGCTTATTGTTGGTTGCACAAGGGAGCGTATGGATGTGCAATGGAATTGGTTGAAGGAAAGAAGAGTTCTATATACATCAATTATGTCTTGAAACGTATCAACATGTTGCTGCATTTTAATGTGAAACCAATTTTGGTTTTTGATGGATGTAATTTGCCCTCCAAAGCTGGACAAGAAGAACGACGTAGAAAGACAAGACAAGAAAACAAAGCAAAAGGTTTGGCTTTTTTGCGTGCTGGGAACCGACAGCAGGCTGTGGAGTGTTTTCAGAAGTGTGTTGATATTACTCCAGAGATGGCTCTTGAAGTAATAAAGGAATGCAGGAAGAAAGGTGTGGAGTGCATTGTAGCGCCTTATGAAGCTGATGCGCAGCTGGCATATCTGATGAAAGCAGGAATAGCTCAGGCAATCATTTCTGAAGACTCTGATTTACTTGTGTATGGATGCCAGAAGGTGATTTTCAAGATGGATTCTTGTGGTCACGGCATGGCTGTTGATTTAGCTGATCTGTCAAAACTCACCGACTTGAAGCTTCATGAGTTCACTCAAGAGAAATTCCGTCACATGTGTATTTTGTCAGGCTGTGATTATCTATCTTCTGTCAAAGGCATTGGCTTACACAAGGCTATTAAACTATTGAGAAAGTCATCTACCATTGACAAGGTGATAAAATCACTGAGACTTGATGCAAAGATGCAGGTTCCAGCTGATTATGAGAAGAGTTTTAAGCAGGCAGATGAGACTTTCCTATACCAGCTTGTATTCGATCCACTGTTAGAGAACTTAGTCCCTTTGAATGAGTTACCCGAAGGCCTAAAACCTGGTGACCTCCAGTTTGCTGGACCATCCATGTCAAGAGAAAAAGCGCTTGGTATTGCTGTTGGAAACATCAATCCCATTACAGGGGAAGTGTTGGCGGATTTCAATAGTCGTGAAACTAAGATTGTCCACCTGAATTCCAACGAAAAATCCGATCACAGCTCAGATTCCCTCACTCCAGTTTCAACATCATCTTTTGGTCACTCGGTCATGAACAAACGAGGGAAGACTGGTTACGACGTGCAGAAAAGCCTCTCTGGACTGATGCTCAATTCGCAGCCAACTGCCAACACCAAGAAGCCTTTCTTACCACCAGGAGCGAAGAGAAAAGCTGAAGAGGACGACTTTGATGATCACTCGTTGTTTAACATGTACACTGCTGTTAAGAGAAGGCCGAAGGATTTGTTTGGTGGTGTTCCTGAGAAGTGCAAACGCAAGGCGTCAAGCCAGTGCATGGGGAGTGGAATCAAGAGATCAAAGTTCAGAAATCCTTTCAAAGTTGGCGATCAAGGGGGTGACGTCAACGAACCAGACGGAACCAGCCGGTGGGTGCTTGTCAATCAATGTGAGGTAGTAGTTTAACATAGAAGAGATTCATTGAAGCATGTGCATCTACGTGTGCGTAGGGTGGGTATCCACTTTCAGCTCAATTACTCAGTTGCGGCAAAATCATCCCTTTACATGTGGAAAATCCTCGGATCCTTTGTTTTGTGTTTATACATGAGCAGAATGGGACTCTTCAGATATAGCTTCCATACAACGCCCTGTATTTTTATTTGTAATCTAACCTCTCGTGGCCATGATGCTGGGCTAAAAAAATAACTCCATTTCTTTCTGGAAAGGTATTTCAATCTGAGTGGAAGCCCAGAGTTACCGAAAATGCCCCCTGATGAGAGCAAAGGTATGCTGAACGGAGGCGAGCTCGATGGTGTGGACACGGACAAAACGAAAGATGCAGATCCTTCGAGTGCATTTAAACCAGGTGCTGTTCTCACTTTGTCAGAAGAAATAACAAAGGAAAGGTTATGTGGCAGCGAATTTGGGAATCGTGTTGAATTCGACGAGAATACTGATGACAAAGACAAAGAGAACGAACCTCTTTCTTGCGATCCGCGCCACAGCAGTCAATCATCGGTCGAAATACTTGAAAGTCAAGGACACGAGCAAGGAGAGATATCAAAGGCGAAAAACGATGTTTTCCTCAAACTACCGGCTTCTCTTGAAAAGGTTCAAAAGCAAGGCGTCTTAACAACCTCAAACACTCAATTGATTTCTCCGCGATCTGGAAATACTAGCCTAAACGATCTATTCGGTTACAAACCCTCGTTCAGAACTAGAGAAATTGATGACAATGTTTCTGTTGACTCTCGAGAGAATGAAGTTGAGGCTCCTGTGAACACCATTGTGGTGGTTAATATTGAGAGTGGCTATCTGTCGGATACAGAAATGAGTACAGACAGTAACACACCCATCTCTACACCGTCGGCGCTGTCGCGTCTCGCTGCACTACCCTCCACGGGAAAGTTAAATTTTGGGCAGGGTAGTGCTGTTGGCACAAAGACAATGAAGAAACAGATCCAACTGAAGTCCAAACCAGGGAGCCGCAGCACTGGTCTGGGAAGATGTCGGGCCATGGGACTCACAAAAAGGAAATCTGTCAATAATTTGGGGCCGGATTCAAAGCAAACTTCGGCAGCTACAGCGACTTTGTTCAGTTATTTTGAATTTGACAGACGAAAGAGACCAAAATTGGAATGCAGTTGATGGCCTCGTCTTGAACTCTCCGTTATTTAAAGGAACTTTAAATTCGAATTGAATTATGAATTTTCGTGTTATTTTTTATGTTTCAGTTGTACATTGCATAGATTTAAAACTTCATTTTAGCAAAAGTGTATATGAAAATATAGGATTTTTGTGCTTAACCTTATGCTGACTTGGGGGGCTTCGTTTGGAATTTTACTTTCTTTTAACCGACGGACAACTCTGCATTGATGTGGCCTTAAGGCAAAGTTCTCTCCTCAGACGCCGTGTAGGAGGCAAATACTATTCATGCATTGTCCAGTCATGATATAGGAACTTTCTCGAGTCGTAAATTGTTGTTAAAAACCACTTTACGTGTTAGGACCACCCTCTGATTAGCCAGTCTCTGGATAAACGCAAGCGTCAAACGACAGACTACCTGTCATTTACTCCTACACTTTCAGTTTCTTTTTCTAGTTTCTTTCGTGAGAGATCTTAACTATCAGCGTGACGTTTGCTGGAAACATCGTTTTCATTCCGTCTTTGTGCTATCGTTTATAGTGACAGATAAGAGTAAGATGTTGAGATACTTTAGTTAAGAAAAGAAGATAAAGTCATGGAAATAAAGCGACGTTTAAACAAGAGAGTGAAATCCCGTAATCCTCTTTTTATATAGAAGGCCTTAGTACATCGAAGTCAAGCTTATTTGTCGTTTCAAATTTTGAAAAGCGAGAGAGTGACTATCAGCAGTTTGTAACTTACAAGACCTGAATCCAAAATGGCCTCCACTTTTTGCTCAtttgttgttgtcgccttttgtttggttttttttttttgtGTCAGTGGAATAAAGAAAGGTAAACTGT

Protein

Uniprot

Uniprot term	Description
Q803U7	Exonuclease 1 OS=Danio rerio OX=7955 GN=exo1 PE=2 SV=1
Q9UQ84	Exonuclease 1 OS=Homo sapiens OX=9606 GN=EXO1 PE=1 SV=2
Q9QZ11	Exonuclease 1 OS=Mus musculus OX=10090 GN=Exo1 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00867	XPG_I	XPG I-region	Family	Interproscan
PF00752	XPG_N	XPG N-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044752	Domain	Exonuclease 1-like, PIN-like domain	Interproscan
IPR006086	Domain	XPG-I domain	Interproscan
IPR006085	Domain	XPG, N-terminal	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR006084	Family	XPG/Rad2 endonuclease	Interproscan
IPR029060	Homologous_superfamily	PIN-like domain superfamily	Interproscan
IPR019974	Conserved_site	XPG conserved site	Interproscan
IPR008918	Conserved_site	Helix-hairpin-helix motif, class 2	Interproscan
IPR037315	Domain	Exonuclease-1, H3TH domain	Interproscan
IPR036279	Homologous_superfamily	5'-3' exonuclease, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11081	FLAP ENDONUCLEASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0004518	Molecular Function	nuclease activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016788	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0035312	Molecular Function	5'-3' DNA exonuclease activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006298	Biological Process	mismatch repair	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0017108	Molecular Function	5'-flap endonuclease activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10746	EXO1; exonuclease 1	EC:3.1.-.-	DNA repair and recombination proteins	ko03400	deepkoala