Gene detail

Detailed information of aawi_s0203.g34.t1 in Acropora awi

Genomic Location: sc0000203_pilon:573044...606944
NR annotation: XP_029183289.1, cilia- and flagella-associated protein 52-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aawi_s0203.g34.t1

TACTTTTTAAAACCGTTTTTGAGGCAAACAGCGAGGCACAATGAGTGATATTAAACCTCTCGATCTTCATGCGATCATTGGGTTTGCAGGAGAAGTTCAAGGAGGCTTGTTAGTGAATAGCGATAGAGAGCACCTGATTTATCCGCTAGGAAACACAATCGTCGTTGAGGAAATCAAAGAAGATAGAAAGGAAGAAGCTGGAGTTGGTGTTAAAAAGAAATACAGCACCTCACCTGAAGACCCAAAATGGCGACAGAAACTTTTGTCCGGCCACAGAGGTGCTGTGTCGTGTTTGGCTGTTTCAAAAAGTGGAAAATATCTAGCATCGGGTGAGAAGACTCACATGGGGTTTCAAGCTGATGTTATCATCTGGGATTTTGAATGTGGTACAATAATGCATACATTGTACCCACAGCTGCATAAAGTTAAAGTAGAGGCTATGGCTTTCTCTCCGAATGACAAATATTTGGTTTCTCTAGGAGGTCAGGATGATAGATGCATTGTGGTATGGGATGTAAAAACAGGCCAACCCATATGTGGAAGCACAGCAGGATGTTTAAGTGCTGGAACCACGTATGCAGTTGCGTATGCTAGTCTGAGCGATGAGATGTTTGTCACTGGAGGAGATAATACCCTTTTGATGTGGAATCTTGAAGTGGAAAATCGTAAAATTCGTTCTTATGATGTTATAATGAGGCAGTTAAAACGCACAGTCAAGTGTATTGAGATGAGCAGTGATGACAGTCGCTTTTACTGTGGAACTACGACCGGAGACATTCTTGAGGTCTGTGCCAAATCTGGCTACATGAATTGCTATGGACCCAAAGACAAAGAGCGGCTAAGCTGCGGAGTGCTTGCTATCCGAATTCTCCTCAATGGTGATCTGTTAGTTGGTGCTGGAGATGGAACAGTTGCTTGCATCAGAAAATCATCAGATCTTTTTGTCATCTCTGGTTCTGTCAAGCTGGATGGTGGAGTTACTTCAATAGCATTAAGGGGACATGGGCAACAGTTCTTTGTGGGTACGAAAAACTCCCAGATGTATCTGTTCAATTCCACATGTTTGGATGCTTATGTCAGGATAAAGACTTGCCACTACTCACCAGTTAATGATATCATCTTTCCTTATGAATGTTCAGACTTATTTCTTACTTGTGGTAAGAGTGAAATACGAGTATGGTCAACTAAGACAAACCAGGAGATTGTGCGGATCACCGTTCCCAACATGACATGCAATGCCATTGCTATAAAGCGATGTGGATCAAGTATCATAAGCGGTTGGGATGATGGCAAAATACGCTCTTTCACACCAGAAAGCGGGAAGCTGTTGTATGTAATAGACAACGCCCATCAGATTGGTGTCACGGCAATAGCTACCACCCATTCTTCTTGCTCCACTTCGACACAGATAATTAGTGGAGGAGGGGAAGGTGAAGTTCGGGTGTGGAGTGTGAGAAACTGCAAGTGGAAACTACAGGAAGCCATGAAAGAAAAACATAAAGGCGCTGTTACTGCCATTAAAGTTCGCAAGAACGACAAGGAGTGTGTGTCAGCAAGCAAAGACGGAACATGCATTGTGTGGGACTTAGAAAATATGGTACGTCACACAATTGTGTTCGCTAACACCATGTTCAAGGCAATCTGCTACAATCCATCTGAATCACAGATCATCACCACTGGCACAGACCGCAAGATCATGTATTGGGAGACGTACGATGGAGGCCAAATACGAGAACTGGAGGGCTCACAGCAGGGATCAATAGATGGCATGGATATATCCAGTGACGGTTCGCACTTTGTTACTGGAGGTGACGACAAAGAGGTTGTGGTATGGAAATACAACGAGGGACTGATCACACACATCGGAAAAGGGCATGGTGGAGGAATTGCAAGAGTGAAGGTCTGTCCAAATTGCAAGTGGATTGTCTCCGTTGGAACAGATGGAAGCATTTTGAGATGGAAATATCCGCATTGAAGACTGTTGCACTTGTTGTTTTTTCATGCTATACCAGTTAATCTAGTAGAAATATTGGTGCCCTGTTTGATACAAGTGCCAAAATTGTGGAAGATTTGAGAAGAGCGATCTCGAGCAATCTTCTTTTCTGAGACATAACTGATTATAAATCGAAAAAAAGGAAGGAAACAGTTTATTCCTTTTGCGTTCTTTCTCAATGCAAACTTTTACGCGTTTTCATTGAAGAGAAGGGAATTTGGTAAGAGCTCTAGTATTAGTAAACATGTACATACATTTACTTTGTTTTCTTTTTTTGGTCATTAAACAATGGATAAATTC

Protein

Uniprot

Gene family

Uniprot term	Description
F1SS88	Cilia- and flagella-associated protein 52 OS=Sus scrofa OX=9823 GN=CFAP52 PE=1 SV=3
E1BKF9	Cilia- and flagella-associated protein 52 OS=Bos taurus OX=9913 GN=CFAP52 PE=1 SV=1
Q5F201	Cilia- and flagella-associated protein 52 OS=Mus musculus OX=10090 GN=Cfap52 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011047	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR050630	Family	WD repeat Echinoderm Microtubule-associated Protein-like	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13720	WD-40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24728	CFAP52, WDR16; cilia- and flagella-associated protein 52	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala