Gene detail

Detailed information of aawi_s0230.g2.t1 in Acropora awi

Genomic Location: sc0000230_pilon:44757...86625
NR annotation: XP_015771062.1, PREDICTED: uncharacterized protein LOC107349430 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

aawi_s0230.g2.t1

ATGAGTCTGATCCTTCTGCCGCCAGCCACAATAGaaggaagagcctacggagatctcggtaattctttccagttactggGtgactctctaaaatccattgagtaccatgaccaacgtttgaaaattccagtagaaattggtgatcggagtggagaaggaacagcctatggagatctcgagaattccttccagttactaggtgactctcgaaaatccattgagtaccatgagaaacgtttgaaaattgcaatagaaatcggtgataggggtggagaaggagcaccttatggaaatcttggcaattcttaccagtcactgggtcaccctcaaaaatccattgagtaccatgagaaatatttgaaaattgcaaaagaaatcggtgatcggcgtggagaaggaagagcgaatgaaagtctaggtacttgttaccagtcactgggtgactttcgaaaatccatggagtgccatgagaaacatttgaaaattgcaattgaaatcggtgatcgaggtggagaaggagcagcttatggagatctcggtaattgttacatatcactgggtgactatcgaaaatccattgagtaccatgagaaagctttgaaaattgcaatagaaatcggttatcgaggtagagaaggaagaggttatggaaatctcggagaagattacaggtcactgggtgactatcgaaaatccattaagtaccatgagaaagctttgaaaattgcaaaagaaatcggtgatcgcgttggagaaggagcaacttatggaaatctcggtagttgttttcagtcactgggtgactatcgaaaatccattgagtaccatgagaaatatttgaaaattgcaatagaaatcggtgatcggcatggagaaggaagagcgactggaagcctcggtacttgttaccagtcactgggtgactatcgaaaatccattgagtaccatgagctacatttgaaaattgcaaaagaaatcggtgatcagggtggagaaggagcagcttatggaagtctcggtacttgttaccaattactgggtgactatcgaaaatccattgagtaccatgagaaacatttgaaaattgcaaaagaaatcggtgatcggggtggagaaggaaaagcctatggaaatcttggtattgcttacaggtcacagggtgagtatcgaaaatccatcgagtaccgtgagaaacgtttgaaaattgcaatagaaatcggtgatcggggtggagaaggagcagcctatggaaatctcgacttcgatgaaagtgaatcattcaagcctGGaaccgtttcaatagatgatgttcttctcaTtgcgcgtgagcttgGtccttcatggaaaacggttggccgagtgctgaacgtcccggatgctgtgattgatcagatTGaagcagacgagtttgaaaTcTTtaataaatgctatAGtcttgTAAgattttggCgcgagatgtacgcacccgatgcatcatatcctcGcttggcacgtgcattgcagCatcccactgttgaccgagtagatttggctgtcaagtactgcggtcttcaattaggcaaggatgtagcagcagcagaaaactgtttattaatcaaagcgaatcaagtttcgacaaaggagagaacaagaaaacctggagggcagggaatggagactatagccttgaacatcgctgtcactgcattagccttgttcctcgccgttctttttgtaggatattcttcaattgttccacccaaacggaaaaaaggagttgaagagaatgagagtgcgcatccggcaggccattcatcacgtgctccacccaaaaggaaaaaaggaattgaagagaatgaaagtgcgcatccggcaggccattcttcacgtgttccacccaaaaggaaaaaaggaattgaagagaatgaaagtgcgcatccggcagtgggatcgttcagtagtaactttcatttgggcatctcgtacttcccacatgctacgaaggtgccacttttggggacattgaagaatagtgctaaattgactgcagaaatggtttcctttagcttcttgtga

Transcript

aawi_s0230.g2.t1

aacagataaCAACTTCTGGAACTCGGTGGCTGTAGTAAATGAGTCTGATCCTTCTGCCGCCAGCCACAATAGaaggaagagcctacggagatctcggtaattctttccagttactggGtgactctctaaaatccattgagtaccatgaccaacgtttgaaaattccagtagaaattggtgatcggagtggagaaggaacagcctatggagatctcgagaattccttccagttactaggtgactctcgaaaatccattgagtaccatgagaaacgtttgaaaattgcaatagaaatcggtgataggggtggagaaggagcaccttatggaaatcttggcaattcttaccagtcactgggtcaccctcaaaaatccattgagtaccatgagaaatatttgaaaattgcaaaagaaatcggtgatcggcgtggagaaggaagagcgaatgaaagtctaggtacttgttaccagtcactgggtgactttcgaaaatccatggagtgccatgagaaacatttgaaaattgcaattgaaatcggtgatcgaggtggagaaggagcagcttatggagatctcggtaattgttacatatcactgggtgactatcgaaaatccattgagtaccatgagaaagctttgaaaattgcaatagaaatcggttatcgaggtagagaaggaagaggttatggaaatctcggagaagattacaggtcactgggtgactatcgaaaatccattaagtaccatgagaaagctttgaaaattgcaaaagaaatcggtgatcgcgttggagaaggagcaacttatggaaatctcggtagttgttttcagtcactgggtgactatcgaaaatccattgagtaccatgagaaatatttgaaaattgcaatagaaatcggtgatcggcatggagaaggaagagcgactggaagcctcggtacttgttaccagtcactgggtgactatcgaaaatccattgagtaccatgagctacatttgaaaattgcaaaagaaatcggtgatcagggtggagaaggagcagcttatggaagtctcggtacttgttaccaattactgggtgactatcgaaaatccattgagtaccatgagaaacatttgaaaattgcaaaagaaatcggtgatcggggtggagaaggaaaagcctatggaaatcttggtattgcttacaggtcacagggtgagtatcgaaaatccatcgagtaccgtgagaaacgtttgaaaattgcaatagaaatcggtgatcggggtggagaaggagcagcctatggaaatctcgacttcgatgaaagtgaatcattcaagcctGGaaccgtttcaatagatgatgttcttctcaTtgcgcgtgagcttgGtccttcatggaaaacggttggccgagtgctgaacgtcccggatgctgtgattgatcagatTGaagcagacgagtttgaaaTcTTtaataaatgctatAGtcttgTAAgattttggCgcgagatgtacgcacccgatgcatcatatcctcGcttggcacgtgcattgcagCatcccactgttgaccgagtagatttggctgtcaagtactgcggtcttcaattaggcaaggatgtagcagcagcagaaaactgtttattaatcaaagcgaatcaagtttcgacaaaggagagaacaagaaaacctggagggcagggaatggagactatagccttgaacatcgctgtcactgcattagccttgttcctcgccgttctttttgtaggatattcttcaattgttccacccaaacggaaaaaaggagttgaagagaatgagagtgcgcatccggcaggccattcatcacgtgctccacccaaaaggaaaaaaggaattgaagagaatgaaagtgcgcatccggcaggccattcttcacgtgttccacccaaaaggaaaaaaggaattgaagagaatgaaagtgcgcatccggcagtgggatcgttcagtagtaactttcatttgggcatctcgtacttcccacatgctacgaaggtgccacttttggggacattgaagaatagtgctaaattgactgcagaaatggtttcctttagcttcttgtgatggcgacatgtGAGTTGATCATGGTACCTTAGATCAAGGTGCTTCATTGTTGACAAGCAATCGTTCGTCCTCTGCCGTGGATTCACAATCCAGAATTAAAGaaagtcgtggaaaaagacccttgcatcccttagtgaccacaactccggaaagacagggacaaaatagagacatccctgagaagacctctacagctccagatcaagctgttgtagcagttaacttgggtgaacaaggacctagttctatttcagaagcagttgtccatcctgatctaacaacaaagaacCagtacattGtgggtgatgtagtgagctcagacagagaaaatgGGAGCGCCTTTGAAGAGCTGCGAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00531	Death	Death domain	Domain	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF13176	TPR_7	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR000488	Domain	Death domain	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR052699	Family	Regulatory & Mitotic Spindle Associated	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10098	RAPSYN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15837	GPSM2; G-protein signaling modulator 2	-	Cilium and associated proteins	ko03037	deepkoala